RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 TMEM259Q4ZIN3 620 aa11.3□□□□□ -0.6
SYNE1-232ENST00000535081 PCMTD1Q96MG8 357 aaPredicted RBP11.3□□□□□ -0.6
SYNE1-232ENST00000535081 GOPCQ9HD26 462 aa11.3□□□□□ -0.6
SYNE1-232ENST00000535081 PCDHB9Q9Y5E1 797 aa11.3□□□□□ -0.6
SYNE1-232ENST00000535081 RHOQP17081 205 aa11.29□□□□□ -0.6
SYNE1-232ENST00000535081 GAS6Q14393 721 aa11.29□□□□□ -0.6
SYNE1-232ENST00000535081 GIGYF1O75420 1035 aaPredicted RBP11.28□□□□□ -0.6
SYNE1-232ENST00000535081 FBXO45P0C2W1 286 aa11.28□□□□□ -0.6
SYNE1-232ENST00000535081 IRS1P35568 1242 aa11.28□□□□□ -0.6
SYNE1-232ENST00000535081 MARSP56192 900 aaKnown RBP11.28□□□□□ -0.6
SYNE1-232ENST00000535081 LYPD4Q6UWN0 246 aa11.27□□□□□ -0.61
SYNE1-232ENST00000535081 ZNF837Q96EG3 531 aaPredicted RBP11.27□□□□□ -0.61
SYNE1-232ENST00000535081 MEN1O00255 615 aa11.26□□□□□ -0.61
SYNE1-232ENST00000535081 GPC1P35052 558 aa11.26□□□□□ -0.61
SYNE1-232ENST00000535081 MAP3K10Q02779 954 aa11.26□□□□□ -0.61
SYNE1-232ENST00000535081 GJD4Q96KN9 370 aaPredicted RBP11.26□□□□□ -0.61
SYNE1-232ENST00000535081 CCDC125Q86Z20 511 aa11.25□□□□□ -0.61
SYNE1-232ENST00000535081 SCARF2Q96GP6 870 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-232ENST00000535081 GMCL1Q96IK5 515 aa11.25□□□□□ -0.61
SYNE1-232ENST00000535081 DNMT3AQ9Y6K1 912 aaPredicted RBP11.25□□□□□ -0.61
SYNE1-232ENST00000535081 ERVK-9P63128 1117 aa11.24□□□□□ -0.61
SYNE1-232ENST00000535081 CC2D2BQ6DHV5 1058 aa11.24□□□□□ -0.61
SYNE1-232ENST00000535081 KANK3Q6NY19 840 aa11.24□□□□□ -0.61
SYNE1-232ENST00000535081 TRIM22Q8IYM9 498 aa11.24□□□□□ -0.61
SYNE1-232ENST00000535081 BCANQ96GW7 911 aa11.24□□□□□ -0.61
SYNE1-232ENST00000535081 A0A1W2PRU2 124 aa11.23□□□□□ -0.61
SYNE1-232ENST00000535081 CELA2BP08218 269 aaPredicted RBP11.23□□□□□ -0.61
SYNE1-232ENST00000535081 RNF20Q5VTR2 975 aa11.22□□□□□ -0.61
SYNE1-232ENST00000535081 RIPOR1Q6ZS17 1223 aa11.22□□□□□ -0.61
SYNE1-232ENST00000535081 MBIPQ9NS73 344 aa11.22□□□□□ -0.61
SYNE1-232ENST00000535081 GPR25O00155 361 aa11.21□□□□□ -0.61
SYNE1-232ENST00000535081 FOXR1Q6PIV2 292 aa11.21□□□□□ -0.61
SYNE1-232ENST00000535081 DYRK1BQ9Y463 629 aa11.21□□□□□ -0.61
SYNE1-232ENST00000535081 SLC27A3Q5K4L6 730 aa11.2□□□□□ -0.62
SYNE1-232ENST00000535081 GPAT2Q6NUI2 795 aa11.2□□□□□ -0.62
SYNE1-232ENST00000535081 CYP2U1Q7Z449 544 aa11.2□□□□□ -0.62
SYNE1-232ENST00000535081 NLRP3Q96P20 1036 aa11.2□□□□□ -0.62
SYNE1-232ENST00000535081 DBN1Q16643 649 aa11.19□□□□□ -0.62
SYNE1-232ENST00000535081 ENAMQ9NRM1 1142 aa11.19□□□□□ -0.62
SYNE1-232ENST00000535081 IGF1RP08069 1367 aa11.18□□□□□ -0.62
SYNE1-232ENST00000535081 H7C1W4 665 aa11.18□□□□□ -0.62
SYNE1-232ENST00000535081 SCTRP47872 440 aa11.18□□□□□ -0.62
SYNE1-232ENST00000535081 MCCD1P59942 119 aaPredicted RBP11.18□□□□□ -0.62
SYNE1-232ENST00000535081 POU4F2Q12837 409 aa11.18□□□□□ -0.62
SYNE1-232ENST00000535081 NR1H3Q13133 447 aa11.18□□□□□ -0.62
SYNE1-232ENST00000535081 CLN3Q13286 438 aa11.18□□□□□ -0.62
SYNE1-232ENST00000535081 ZNF592Q92610 1267 aa11.18□□□□□ -0.62
SYNE1-232ENST00000535081 GAS2L1Q99501 681 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-232ENST00000535081 GRIP2Q9C0E4 1043 aa11.17□□□□□ -0.62
SYNE1-232ENST00000535081 IGHA1P01876 353 aa11.16□□□□□ -0.62
SYNE1-232ENST00000535081 FOXK2Q01167 660 aa11.16□□□□□ -0.62
SYNE1-232ENST00000535081 NEUROD2Q15784 382 aa11.16□□□□□ -0.62
SYNE1-232ENST00000535081 NBPF10Q6P3W6 841 aaKnown RBP11.16□□□□□ -0.62
SYNE1-232ENST00000535081 NBPF15Q8N660 670 aa11.16□□□□□ -0.62
SYNE1-232ENST00000535081 GTPBP3Q969Y2 492 aaKnown RBP11.16□□□□□ -0.62
SYNE1-232ENST00000535081 PCDHB11Q9Y5F2 797 aa11.16□□□□□ -0.62
SYNE1-232ENST00000535081 IL27Q8NEV9 243 aa11.15□□□□□ -0.62
SYNE1-232ENST00000535081 TRERF1Q96PN7 1200 aa11.15□□□□□ -0.62
SYNE1-232ENST00000535081 ARHGEF10LQ9HCE6 1279 aa11.15□□□□□ -0.62
SYNE1-232ENST00000535081 ZNF330Q9Y3S2 320 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-232ENST00000535081 SPATA31C2B4DYI2 1134 aa11.14□□□□□ -0.63
SYNE1-232ENST00000535081 TRAK2O60296 914 aa11.14□□□□□ -0.63
SYNE1-232ENST00000535081 OSBPL3Q9H4L5 887 aa11.14□□□□□ -0.63
SYNE1-232ENST00000535081 GPR37L1O60883 481 aa11.12□□□□□ -0.63
SYNE1-232ENST00000535081 BCRP11274 1271 aa11.12□□□□□ -0.63
SYNE1-232ENST00000535081 WDR44Q5JSH3 913 aa11.12□□□□□ -0.63
SYNE1-232ENST00000535081 ESF1Q9H501 851 aaKnown RBP11.12□□□□□ -0.63
SYNE1-232ENST00000535081 TIMMDC1Q9NPL8 285 aa11.12□□□□□ -0.63
SYNE1-232ENST00000535081 PHF20L1A8MW92 1017 aa11.11□□□□□ -0.63
SYNE1-232ENST00000535081 WASLO00401 505 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-232ENST00000535081 SOCS7O14512 581 aa11.11□□□□□ -0.63
SYNE1-232ENST00000535081 TAS1R3Q7RTX0 852 aa11.11□□□□□ -0.63
SYNE1-232ENST00000535081 BANK1Q8NDB2 785 aa11.11□□□□□ -0.63
SYNE1-232ENST00000535081 ACDQ96AP0 544 aa11.11□□□□□ -0.63
SYNE1-232ENST00000535081 NDUFB9Q9Y6M9 179 aa11.11□□□□□ -0.63
SYNE1-232ENST00000535081 MX2P20592 715 aa11.1□□□□□ -0.63
SYNE1-232ENST00000535081 MTMR14Q8NCE2 650 aa11.1□□□□□ -0.63
SYNE1-232ENST00000535081 NEDD1Q8NHV4 660 aa11.1□□□□□ -0.63
SYNE1-232ENST00000535081 NUCKS1Q9H1E3 243 aaKnown RBP11.1□□□□□ -0.63
SYNE1-232ENST00000535081 RAB6BQ9NRW1 208 aa11.1□□□□□ -0.63
SYNE1-232ENST00000535081 CNTNAP5Q8WYK1 1306 aa11.09□□□□□ -0.63
SYNE1-232ENST00000535081 F11P03951 625 aa11.09□□□□□ -0.63
SYNE1-232ENST00000535081 PODNQ7Z5L7 613 aa11.09□□□□□ -0.63
SYNE1-232ENST00000535081 NSFL1CQ9UNZ2 370 aaKnown RBP11.08□□□□□ -0.64
SYNE1-232ENST00000535081 GNRH1P01148 92 aa11.07□□□□□ -0.64
SYNE1-232ENST00000535081 BEND7Q8N7W2 519 aaPredicted RBP11.07□□□□□ -0.64
SYNE1-232ENST00000535081 LRRC4BQ9NT99 713 aa11.07□□□□□ -0.64
SYNE1-232ENST00000535081 APBB1O00213 710 aa11.06□□□□□ -0.64
SYNE1-232ENST00000535081 CNKSR1Q969H4 720 aa11.06□□□□□ -0.64
SYNE1-232ENST00000535081 DCAF5Q96JK2 942 aa11.06□□□□□ -0.64
SYNE1-232ENST00000535081 ESYT1Q9BSJ8 1104 aa11.06□□□□□ -0.64
SYNE1-232ENST00000535081 IL2RAP01589 272 aa11.05□□□□□ -0.64
SYNE1-232ENST00000535081 MYCP01106 439 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-232ENST00000535081 CENPCQ03188 943 aa11.04□□□□□ -0.64
SYNE1-232ENST00000535081 PLA2G4EQ3MJ16 856 aa11.04□□□□□ -0.64
SYNE1-232ENST00000535081 GPAMQ9HCL2 828 aa11.04□□□□□ -0.64
SYNE1-232ENST00000535081 OIP5O43482 229 aa11.03□□□□□ -0.64
SYNE1-232ENST00000535081 THBS1P07996 1170 aa11.03□□□□□ -0.64
SYNE1-232ENST00000535081 CCDC85AQ96PX6 553 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-232ENST00000535081 CDCA7Q9BWT1 371 aaPredicted RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms