RNA–Protein interactions for RNA: ENST00000534356.1

CASP4-213, Transcript of caspase 4, humanhuman

TSL 1 (best)

Gene CASP4, Length 771 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-213ENST00000534356 OSBPL3Q9H4L5 887 aa12.35□□□□□ -0.43
CASP4-213ENST00000534356 ATP5J2-PTCD1G3V325 749 aa12.34□□□□□ -0.43
CASP4-213ENST00000534356 CBLBQ13191 982 aa12.34□□□□□ -0.43
CASP4-213ENST00000534356 PPP1R15AO75807 674 aaPredicted RBP12.33□□□□□ -0.44
CASP4-213ENST00000534356 CLDN10P78369 228 aa12.33□□□□□ -0.44
CASP4-213ENST00000534356 ESF1Q9H501 851 aaKnown RBP12.33□□□□□ -0.44
CASP4-213ENST00000534356 PCDHGA11Q9Y5H2 935 aa12.33□□□□□ -0.44
CASP4-213ENST00000534356 RASA1P20936 1047 aa12.32□□□□□ -0.44
CASP4-213ENST00000534356 GTF2IP78347 998 aa12.32□□□□□ -0.44
CASP4-213ENST00000534356 TRIM50Q86XT4 487 aa12.32□□□□□ -0.44
CASP4-213ENST00000534356 OGFOD1Q8N543 542 aa12.32□□□□□ -0.44
CASP4-213ENST00000534356 TRIM52Q96A61 297 aa12.32□□□□□ -0.44
CASP4-213ENST00000534356 DGAT1O75907 488 aa12.31□□□□□ -0.44
CASP4-213ENST00000534356 AVPP01185 164 aa12.31□□□□□ -0.44
CASP4-213ENST00000534356 CRTC2Q53ET0 693 aaPredicted RBP12.31□□□□□ -0.44
CASP4-213ENST00000534356 ZBTB7BO15156 539 aaPredicted RBP12.3□□□□□ -0.44
CASP4-213ENST00000534356 PKDCCQ504Y2 493 aa12.3□□□□□ -0.44
CASP4-213ENST00000534356 Q6ZVU0 165 aa12.3□□□□□ -0.44
CASP4-213ENST00000534356 KIAA1024Q9UPX6 916 aa12.3□□□□□ -0.44
CASP4-213ENST00000534356 CAPN5O15484 640 aaPredicted RBP12.29□□□□□ -0.44
CASP4-213ENST00000534356 LAPTM4AQ15012 233 aa12.29□□□□□ -0.44
CASP4-213ENST00000534356 LARP1Q6PKG0 1096 aaKnown RBP12.29□□□□□ -0.44
CASP4-213ENST00000534356 IRX2Q9BZI1 471 aaPredicted RBP12.29□□□□□ -0.44
CASP4-213ENST00000534356 DNAAF2Q9NVR5 837 aaKnown RBP12.29□□□□□ -0.44
CASP4-213ENST00000534356 FAM196BA6NMK8 535 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 USP17L15C9J2P7 530 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 USP17L10C9JJH3 530 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 USP17L13C9JLJ4 530 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 USP17L12C9JPN9 530 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 USP17L11C9JVI0 530 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 USP17L21D6R901 530 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 USP17L18D6R9N7 530 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 USP17L22D6RA61 530 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 USP17L17D6RBQ6 530 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 USP17L19D6RCP7 530 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 USP17L20D6RJB6 530 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 ATG7O95352 703 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 ADH1AP07327 375 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 ATP1A2P50993 1020 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 USP17L24Q0WX57 530 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 PTK7Q13308 1070 aa12.28□□□□□ -0.44
CASP4-213ENST00000534356 KDF1Q8NAX2 398 aaPredicted RBP12.28□□□□□ -0.44
CASP4-213ENST00000534356 ZNF594Q96JF6 807 aaPredicted RBP12.28□□□□□ -0.44
CASP4-213ENST00000534356 STAU1O95793 577 aaKnown RBP12.27□□□□□ -0.45
CASP4-213ENST00000534356 CYP2U1Q7Z449 544 aa12.27□□□□□ -0.45
CASP4-213ENST00000534356 AGBL1Q96MI9 1066 aa12.27□□□□□ -0.45
CASP4-213ENST00000534356 PSME1Q06323 249 aa12.26□□□□□ -0.45
CASP4-213ENST00000534356 LARGE2Q8N3Y3 721 aa12.26□□□□□ -0.45
CASP4-213ENST00000534356 ACIN1Q9UKV3 1341 aaKnown RBP12.26□□□□□ -0.45
CASP4-213ENST00000534356 DKK1O94907 266 aa12.25□□□□□ -0.45
CASP4-213ENST00000534356 MEIOBQ8N635 442 aa12.25□□□□□ -0.45
CASP4-213ENST00000534356 CCDC102BQ68D86 513 aa12.24□□□□□ -0.45
CASP4-213ENST00000534356 TPCN2Q8NHX9 752 aa12.24□□□□□ -0.45
CASP4-213ENST00000534356 NOVA2Q9UNW9 492 aaKnown RBP12.24□□□□□ -0.45
CASP4-213ENST00000534356 SMCPP49901 116 aaPredicted RBP12.23□□□□□ -0.45
CASP4-213ENST00000534356 SCNN1DP51172 638 aa12.23□□□□□ -0.45
CASP4-213ENST00000534356 RELBQ01201 579 aa12.23□□□□□ -0.45
CASP4-213ENST00000534356 CTC1Q2NKJ3 1217 aa12.23□□□□□ -0.45
CASP4-213ENST00000534356 ANKMY2Q8IV38 441 aa12.23□□□□□ -0.45
CASP4-213ENST00000534356 SIX5Q8N196 739 aa12.23□□□□□ -0.45
CASP4-213ENST00000534356 ARXQ96QS3 562 aa12.23□□□□□ -0.45
CASP4-213ENST00000534356 ZMIZ1Q9ULJ6 1067 aa12.23□□□□□ -0.45
CASP4-213ENST00000534356 GNRH1P01148 92 aa12.22□□□□□ -0.45
CASP4-213ENST00000534356 PTGIRP43119 386 aa12.22□□□□□ -0.45
CASP4-213ENST00000534356 DPYDQ12882 1025 aa12.22□□□□□ -0.45
CASP4-213ENST00000534356 ELOAQ14241 798 aaKnown RBP12.22□□□□□ -0.45
CASP4-213ENST00000534356 ARHGEF10LQ9HCE6 1279 aa12.22□□□□□ -0.45
CASP4-213ENST00000534356 RAB6BQ9NRW1 208 aa12.22□□□□□ -0.45
CASP4-213ENST00000534356 TMEM229AB2RXF0 380 aa12.21□□□□□ -0.45
CASP4-213ENST00000534356 ZNF395Q9H8N7 513 aaPredicted RBP12.21□□□□□ -0.45
CASP4-213ENST00000534356 ETNK1Q9HBU6 452 aa12.21□□□□□ -0.45
CASP4-213ENST00000534356 AXIN1O15169 862 aa12.2□□□□□ -0.46
CASP4-213ENST00000534356 GDF10P55107 478 aa12.2□□□□□ -0.46
CASP4-213ENST00000534356 CRIPAKQ8N1N5 446 aa12.2□□□□□ -0.46
CASP4-213ENST00000534356 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.2□□□□□ -0.46
CASP4-213ENST00000534356 STK32AQ8WU08 396 aa12.2□□□□□ -0.46
CASP4-213ENST00000534356 A0A1W2PRU2 124 aa12.19□□□□□ -0.46
CASP4-213ENST00000534356 SFI1A8K8P3 1242 aa12.19□□□□□ -0.46
CASP4-213ENST00000534356 ST8SIA5O15466 376 aa12.19□□□□□ -0.46
CASP4-213ENST00000534356 BMP1P13497 986 aa12.19□□□□□ -0.46
CASP4-213ENST00000534356 LINC00528Q8N1L1 170 aa12.19□□□□□ -0.46
CASP4-213ENST00000534356 RETREG2Q8NC44 543 aa12.19□□□□□ -0.46
CASP4-213ENST00000534356 TSEN34Q9BSV6 310 aaKnown RBP12.19□□□□□ -0.46
CASP4-213ENST00000534356 IL2RAP01589 272 aa12.18□□□□□ -0.46
CASP4-213ENST00000534356 MRPL14Q6P1L8 145 aaKnown RBP12.18□□□□□ -0.46
CASP4-213ENST00000534356 FAM200AQ8TCP9 573 aa12.18□□□□□ -0.46
CASP4-213ENST00000534356 AAASQ9NRG9 546 aa12.18□□□□□ -0.46
CASP4-213ENST00000534356 ZNF358Q9NW07 568 aa12.18□□□□□ -0.46
CASP4-213ENST00000534356 INHAP05111 366 aa12.17□□□□□ -0.46
CASP4-213ENST00000534356 CSB-PGBD3P0DP91 1061 aa12.17□□□□□ -0.46
CASP4-213ENST00000534356 SEC13P55735 322 aa12.17□□□□□ -0.46
CASP4-213ENST00000534356 ESCO1Q5FWF5 840 aa12.17□□□□□ -0.46
CASP4-213ENST00000534356 TMEM164Q5U3C3 297 aa12.17□□□□□ -0.46
CASP4-213ENST00000534356 TRIM46Q7Z4K8 759 aa12.17□□□□□ -0.46
CASP4-213ENST00000534356 RBM19Q9Y4C8 960 aaKnown RBP12.17□□□□□ -0.46
CASP4-213ENST00000534356 WASLO00401 505 aaPredicted RBP12.16□□□□□ -0.46
CASP4-213ENST00000534356 CLN3Q13286 438 aa12.16□□□□□ -0.46
CASP4-213ENST00000534356 C6orf118Q5T5N4 469 aa12.16□□□□□ -0.46
CASP4-213ENST00000534356 XAGE2Q96GT9 111 aa12.16□□□□□ -0.46
CASP4-213ENST00000534356 SERTAD1Q9UHV2 236 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms