RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 NUDT16Q96DE0 195 aaKnown RBP9.67□□□□□ -0.86
CD44-237ENST00000534082 CDCA7Q9BWT1 371 aaPredicted RBP9.67□□□□□ -0.86
CD44-237ENST00000534082 TNS2Q63HR2 1409 aa9.66□□□□□ -0.86
CD44-237ENST00000534082 ACEP12821 1306 aa9.66□□□□□ -0.86
CD44-237ENST00000534082 QSER1Q2KHR3 1735 aa9.66□□□□□ -0.86
CD44-237ENST00000534082 SLC16A10Q8TF71 515 aa9.66□□□□□ -0.86
CD44-237ENST00000534082 KIF12Q96FN5 646 aa9.66□□□□□ -0.86
CD44-237ENST00000534082 PCNTO95613 3336 aa9.66□□□□□ -0.86
CD44-237ENST00000534082 BRD4O60885 1362 aaPredicted RBP9.65□□□□□ -0.86
CD44-237ENST00000534082 WDR17Q8IZU2 1322 aa9.65□□□□□ -0.86
CD44-237ENST00000534082 SLC34A2O95436 690 aa9.65□□□□□ -0.86
CD44-237ENST00000534082 LHX8Q68G74 356 aa9.65□□□□□ -0.86
CD44-237ENST00000534082 TNS4Q8IZW8 715 aa9.65□□□□□ -0.86
CD44-237ENST00000534082 DNAJC5GQ8N7S2 189 aa9.65□□□□□ -0.86
CD44-237ENST00000534082 FAM212AQ96EL1 285 aa9.65□□□□□ -0.86
CD44-237ENST00000534082 ARHGEF28Q8N1W1 1705 aaKnown RBP9.65□□□□□ -0.87
CD44-237ENST00000534082 PNPLA7Q6ZV29 1317 aa9.64□□□□□ -0.87
CD44-237ENST00000534082 KIF3CO14782 793 aa9.64□□□□□ -0.87
CD44-237ENST00000534082 MAP3K13O43283 966 aa9.64□□□□□ -0.87
CD44-237ENST00000534082 NLRP13Q86W25 1043 aa9.64□□□□□ -0.87
CD44-237ENST00000534082 SLIT3O75094 1523 aa9.64□□□□□ -0.87
CD44-237ENST00000534082 BTAF1O14981 1849 aa9.63□□□□□ -0.87
CD44-237ENST00000534082 ABCC6O95255 1503 aa9.63□□□□□ -0.87
CD44-237ENST00000534082 ACSBG1Q96GR2 724 aa9.63□□□□□ -0.87
CD44-237ENST00000534082 LRRC4BQ9NT99 713 aa9.63□□□□□ -0.87
CD44-237ENST00000534082 USP6P35125 1406 aa9.63□□□□□ -0.87
CD44-237ENST00000534082 TUBGCP6Q96RT7 1819 aa9.63□□□□□ -0.87
CD44-237ENST00000534082 COL18A1P39060 1754 aa9.63□□□□□ -0.87
CD44-237ENST00000534082 EXOC5O00471 708 aa9.62□□□□□ -0.87
CD44-237ENST00000534082 DCAF8Q5TAQ9 597 aa9.62□□□□□ -0.87
CD44-237ENST00000534082 TRPM1Q7Z4N2 1603 aa9.61□□□□□ -0.87
CD44-237ENST00000534082 CARD10Q9BWT7 1032 aa9.61□□□□□ -0.87
CD44-237ENST00000534082 CPSF1Q10570 1443 aaKnown RBP9.61□□□□□ -0.87
CD44-237ENST00000534082 WDR90Q96KV7 1748 aa9.61□□□□□ -0.87
CD44-237ENST00000534082 PLEKHG3A1L390 1219 aa9.6□□□□□ -0.87
CD44-237ENST00000534082 TFCP2L1Q9NZI6 479 aa9.6□□□□□ -0.87
CD44-237ENST00000534082 AXIN2Q9Y2T1 843 aa9.6□□□□□ -0.87
CD44-237ENST00000534082 PPIP5K1Q6PFW1 1433 aa9.59□□□□□ -0.87
CD44-237ENST00000534082 CSB-PGBD3P0DP91 1061 aa9.59□□□□□ -0.87
CD44-237ENST00000534082 SLC27A3Q5K4L6 730 aa9.59□□□□□ -0.87
CD44-237ENST00000534082 JMYQ8N9B5 988 aa9.59□□□□□ -0.87
CD44-237ENST00000534082 KLRG1Q96E93 195 aa9.59□□□□□ -0.87
CD44-237ENST00000534082 CDK19Q9BWU1 502 aa9.59□□□□□ -0.87
CD44-237ENST00000534082 CCDC7Q96M83 1385 aa9.59□□□□□ -0.87
CD44-237ENST00000534082 TOMM70O94826 608 aa9.58□□□□□ -0.88
CD44-237ENST00000534082 NLRP6P59044 892 aa9.58□□□□□ -0.88
CD44-237ENST00000534082 MPHOSPH9Q99550 1183 aa9.58□□□□□ -0.88
CD44-237ENST00000534082 PCDHB13Q9Y5F0 798 aa9.58□□□□□ -0.88
CD44-237ENST00000534082 ATMINO43313 823 aaPredicted RBP9.57□□□□□ -0.88
CD44-237ENST00000534082 TRPC6Q9Y210 931 aa9.57□□□□□ -0.88
CD44-237ENST00000534082 PIK3C2AO00443 1686 aa9.57□□□□□ -0.88
CD44-237ENST00000534082 HTRA3P83110 453 aa9.56□□□□□ -0.88
CD44-237ENST00000534082 MSL1Q68DK7 614 aa9.56□□□□□ -0.88
CD44-237ENST00000534082 PPARGC1BQ86YN6 1023 aaKnown RBP9.56□□□□□ -0.88
CD44-237ENST00000534082 CD2APQ9Y5K6 639 aa9.56□□□□□ -0.88
CD44-237ENST00000534082 CICQ96RK0 1608 aaPredicted RBP9.56□□□□□ -0.88
CD44-237ENST00000534082 RGPD5Q99666 1765 aa9.55□□□□□ -0.88
CD44-237ENST00000534082 KCNQ4P56696 695 aa9.55□□□□□ -0.88
CD44-237ENST00000534082 ASTLQ6HA08 431 aaPredicted RBP9.55□□□□□ -0.88
CD44-237ENST00000534082 ARHGEF25Q86VW2 580 aa9.55□□□□□ -0.88
CD44-237ENST00000534082 WWC3Q9ULE0 1092 aa9.55□□□□□ -0.88
CD44-237ENST00000534082 PYGBP11216 843 aa9.54□□□□□ -0.88
CD44-237ENST00000534082 QRICH2Q9H0J4 1663 aa9.54□□□□□ -0.88
CD44-237ENST00000534082 IGSF1Q8N6C5 1336 aa9.54□□□□□ -0.88
CD44-237ENST00000534082 ATN1P54259 1190 aaPredicted RBP9.53□□□□□ -0.88
CD44-237ENST00000534082 COL23A1Q86Y22 540 aaPredicted RBP9.53□□□□□ -0.88
CD44-237ENST00000534082 BMP2KQ9NSY1 1161 aaPredicted RBP9.53□□□□□ -0.88
CD44-237ENST00000534082 NFAT5O94916 1531 aa9.52□□□□□ -0.88
CD44-237ENST00000534082 SOX12O15370 315 aa9.52□□□□□ -0.89
CD44-237ENST00000534082 LY75O60449 1722 aa9.52□□□□□ -0.89
CD44-237ENST00000534082 RBM46Q8TBY0 533 aaKnown RBP9.52□□□□□ -0.89
CD44-237ENST00000534082 NMRK2Q9NPI5 230 aa9.52□□□□□ -0.89
CD44-237ENST00000534082 METRNQ9UJH8 293 aa9.52□□□□□ -0.89
CD44-237ENST00000534082 IL2RBP14784 551 aa9.51□□□□□ -0.89
CD44-237ENST00000534082 SRPK2P78362 688 aaKnown RBP9.51□□□□□ -0.89
CD44-237ENST00000534082 IFNLR1Q8IU57 520 aaPredicted RBP9.51□□□□□ -0.89
CD44-237ENST00000534082 KCNH5Q8NCM2 988 aa9.51□□□□□ -0.89
CD44-237ENST00000534082 PCDH10Q9P2E7 1040 aa9.51□□□□□ -0.89
CD44-237ENST00000534082 HSPA1AP0DMV8 641 aaKnown RBP9.5□□□□□ -0.89
CD44-237ENST00000534082 HSPA1BP0DMV9 641 aaKnown RBP9.5□□□□□ -0.89
CD44-237ENST00000534082 IFNL1Q8IU54 200 aa9.5□□□□□ -0.89
CD44-237ENST00000534082 SLC39A7Q92504 469 aa9.5□□□□□ -0.89
CD44-237ENST00000534082 CCNL1Q9UK58 526 aaPredicted RBP9.5□□□□□ -0.89
CD44-237ENST00000534082 KDM2AQ9Y2K7 1162 aa9.5□□□□□ -0.89
CD44-237ENST00000534082 DOT1LQ8TEK3 1739 aa9.5□□□□□ -0.89
CD44-237ENST00000534082 ERBB3P21860 1342 aa9.5□□□□□ -0.89
CD44-237ENST00000534082 NSD2O96028 1365 aa9.5□□□□□ -0.89
CD44-237ENST00000534082 TIE1P35590 1138 aa9.49□□□□□ -0.89
CD44-237ENST00000534082 FSTL1Q12841 308 aa9.49□□□□□ -0.89
CD44-237ENST00000534082 GSE1Q14687 1217 aa9.49□□□□□ -0.89
CD44-237ENST00000534082 C16orf71Q8IYS4 520 aaPredicted RBP9.49□□□□□ -0.89
CD44-237ENST00000534082 SPOCK2Q92563 424 aa9.49□□□□□ -0.89
CD44-237ENST00000534082 SYTL4Q96C24 671 aaPredicted RBP9.49□□□□□ -0.89
CD44-237ENST00000534082 CABP2Q9NPB3 220 aa9.49□□□□□ -0.89
CD44-237ENST00000534082 NLRP2Q9NX02 1062 aa9.49□□□□□ -0.89
CD44-237ENST00000534082 ANKRD36BQ8N2N9 1353 aa9.49□□□□□ -0.89
CD44-237ENST00000534082 KAT6BQ8WYB5 2073 aa9.48□□□□□ -0.89
CD44-237ENST00000534082 DCAF11Q8TEB1 546 aa9.48□□□□□ -0.89
CD44-237ENST00000534082 TTLL13PA6NNM8 815 aa9.47□□□□□ -0.89
CD44-237ENST00000534082 C7P10643 843 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms