RNA–Protein interactions for RNA: ENST00000533209.5

SSBP3-214, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-214ENST00000533209 BCL9O00512 1426 aa16.14■□□□□ 0.17
SSBP3-214ENST00000533209 KDRP35968 1356 aa16.13■□□□□ 0.17
SSBP3-214ENST00000533209 SULT6B1Q6IMI4 303 aa16.13■□□□□ 0.17
SSBP3-214ENST00000533209 DDX54Q8TDD1 881 aaKnown RBP16.13■□□□□ 0.17
SSBP3-214ENST00000533209 PRKRIP1Q9H875 184 aaPredicted RBP16.13■□□□□ 0.17
SSBP3-214ENST00000533209 CCDC125Q86Z20 511 aa16.12■□□□□ 0.17
SSBP3-214ENST00000533209 PLEKHG2Q9H7P9 1386 aa16.12■□□□□ 0.17
SSBP3-214ENST00000533209 TRIM37O94972 964 aa16.11■□□□□ 0.17
SSBP3-214ENST00000533209 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.11■□□□□ 0.17
SSBP3-214ENST00000533209 MYBBP1AQ9BQG0 1328 aaKnown RBP16.11■□□□□ 0.17
SSBP3-214ENST00000533209 U2SURPO15042 1029 aaKnown RBP16.1■□□□□ 0.17
SSBP3-214ENST00000533209 CYP27B1O15528 508 aa16.1■□□□□ 0.17
SSBP3-214ENST00000533209 HMOX1P09601 288 aa16.1■□□□□ 0.17
SSBP3-214ENST00000533209 PCDH11XQ9BZA7 1347 aa16.1■□□□□ 0.17
SSBP3-214ENST00000533209 PCDH11YQ9BZA8 1340 aa16.1■□□□□ 0.17
SSBP3-214ENST00000533209 SHANK3Q9BYB0 1731 aa16.09■□□□□ 0.17
SSBP3-214ENST00000533209 SPG7Q9UQ90 795 aa16.09■□□□□ 0.17
SSBP3-214ENST00000533209 PKD1L3Q7Z443 1732 aa16.08■□□□□ 0.17
SSBP3-214ENST00000533209 PTF1AQ7RTS3 328 aa16.08■□□□□ 0.16
SSBP3-214ENST00000533209 NUDCQ9Y266 331 aa16.08■□□□□ 0.16
SSBP3-214ENST00000533209 SF3B2Q13435 895 aaKnown RBP16.07■□□□□ 0.16
SSBP3-214ENST00000533209 BCL11BQ9C0K0 894 aaPredicted RBP16.07■□□□□ 0.16
SSBP3-214ENST00000533209 KCNQ2O43526 872 aa16.06■□□□□ 0.16
SSBP3-214ENST00000533209 AMOTQ4VCS5 1084 aa16.06■□□□□ 0.16
SSBP3-214ENST00000533209 PLEKHO1Q53GL0 409 aaPredicted RBP16.06■□□□□ 0.16
SSBP3-214ENST00000533209 DEFB132Q7Z7B7 95 aa16.06■□□□□ 0.16
SSBP3-214ENST00000533209 ACSBG1Q96GR2 724 aa16.06■□□□□ 0.16
SSBP3-214ENST00000533209 U2AF1L5P0DN76 240 aaPredicted RBP16.05■□□□□ 0.16
SSBP3-214ENST00000533209 PHKG2P15735 406 aa16.05■□□□□ 0.16
SSBP3-214ENST00000533209 U2AF1Q01081 240 aaKnown RBP eCLIP16.05■□□□□ 0.16
SSBP3-214ENST00000533209 NKX1-1Q15270 411 aaPredicted RBP16.05■□□□□ 0.16
SSBP3-214ENST00000533209 APBA3O96018 575 aa16.04■□□□□ 0.16
SSBP3-214ENST00000533209 BAG6P46379 1132 aa16.04■□□□□ 0.16
SSBP3-214ENST00000533209 ZNF530Q6P9A1 599 aaPredicted RBP16.04■□□□□ 0.16
SSBP3-214ENST00000533209 IFNL2Q8IZJ0 200 aa16.04■□□□□ 0.16
SSBP3-214ENST00000533209 RSPH6AQ9H0K4 717 aa16.04■□□□□ 0.16
SSBP3-214ENST00000533209 TNS1Q9HBL0 1735 aaKnown RBP16.04■□□□□ 0.16
SSBP3-214ENST00000533209 SBF2Q86WG5 1849 aa16.03■□□□□ 0.16
SSBP3-214ENST00000533209 ANP32CO43423 234 aa16.02■□□□□ 0.16
SSBP3-214ENST00000533209 FCHSD2O94868 740 aa16.02■□□□□ 0.16
SSBP3-214ENST00000533209 PRKAR2BP31323 418 aa16.02■□□□□ 0.16
SSBP3-214ENST00000533209 PRIM1P49642 420 aaKnown RBP16.02■□□□□ 0.16
SSBP3-214ENST00000533209 EN1Q05925 392 aaPredicted RBP16.02■□□□□ 0.16
SSBP3-214ENST00000533209 NHSQ6T4R5 1651 aa16.02■□□□□ 0.15
SSBP3-214ENST00000533209 MTHFSDQ2M296 383 aaKnown RBP16.01■□□□□ 0.15
SSBP3-214ENST00000533209 PHACTR3Q96KR7 559 aa16■□□□□ 0.15
SSBP3-214ENST00000533209 CAMKK2Q96RR4 588 aa16■□□□□ 0.15
SSBP3-214ENST00000533209 C1orf141Q5JVX7 400 aa15.99■□□□□ 0.15
SSBP3-214ENST00000533209 SYTL4Q96C24 671 aaPredicted RBP15.99■□□□□ 0.15
SSBP3-214ENST00000533209 DOT1LQ8TEK3 1739 aa15.99■□□□□ 0.15
SSBP3-214ENST00000533209 PLSCR1O15162 318 aa15.98■□□□□ 0.15
SSBP3-214ENST00000533209 KDM6AO15550 1401 aaPredicted RBP15.98■□□□□ 0.15
SSBP3-214ENST00000533209 HSP90AB1P08238 724 aaKnown RBP15.98■□□□□ 0.15
SSBP3-214ENST00000533209 EZH2Q15910 746 aaKnown RBP15.98■□□□□ 0.15
SSBP3-214ENST00000533209 CCDC184Q52MB2 194 aa15.98■□□□□ 0.15
SSBP3-214ENST00000533209 AKAP4Q5JQC9 854 aa15.98■□□□□ 0.15
SSBP3-214ENST00000533209 DCAF5Q96JK2 942 aa15.98■□□□□ 0.15
SSBP3-214ENST00000533209 TOGARAM1Q9Y4F4 1720 aa15.97■□□□□ 0.15
SSBP3-214ENST00000533209 MPRIPQ6WCQ1 1025 aa15.96■□□□□ 0.15
SSBP3-214ENST00000533209 GAS2L2Q8NHY3 880 aa15.96■□□□□ 0.15
SSBP3-214ENST00000533209 PLEKHF1Q96S99 279 aa15.96■□□□□ 0.15
SSBP3-214ENST00000533209 ERVV-2B6SEH9 535 aa15.95■□□□□ 0.14
SSBP3-214ENST00000533209 PROM2Q8N271 834 aa15.95■□□□□ 0.14
SSBP3-214ENST00000533209 PIGBQ92521 554 aa15.95■□□□□ 0.14
SSBP3-214ENST00000533209 BTAF1O14981 1849 aa15.94■□□□□ 0.14
SSBP3-214ENST00000533209 WDR43Q15061 677 aaKnown RBP eCLIP15.94■□□□□ 0.14
SSBP3-214ENST00000533209 LGR6Q9HBX8 967 aa15.94■□□□□ 0.14
SSBP3-214ENST00000533209 ADAMTS8Q9UP79 889 aa15.94■□□□□ 0.14
SSBP3-214ENST00000533209 MAP3K5Q99683 1374 aa15.93■□□□□ 0.14
SSBP3-214ENST00000533209 RNMTO43148 476 aaKnown RBP15.93■□□□□ 0.14
SSBP3-214ENST00000533209 TXNRD1Q16881 649 aa15.93■□□□□ 0.14
SSBP3-214ENST00000533209 TMOD3Q9NYL9 352 aa15.93■□□□□ 0.14
SSBP3-214ENST00000533209 KAT6BQ8WYB5 2073 aa15.93■□□□□ 0.14
SSBP3-214ENST00000533209 GNAT3A8MTJ3 354 aa15.92■□□□□ 0.14
SSBP3-214ENST00000533209 CABP4P57796 275 aa15.92■□□□□ 0.14
SSBP3-214ENST00000533209 PNNQ9H307 717 aaKnown RBP15.92■□□□□ 0.14
SSBP3-214ENST00000533209 RGPD3A6NKT7 1758 aaPredicted RBP15.92■□□□□ 0.14
SSBP3-214ENST00000533209 RGPD4Q7Z3J3 1758 aa15.92■□□□□ 0.14
SSBP3-214ENST00000533209 RREB1Q92766 1687 aa15.9■□□□□ 0.14
SSBP3-214ENST00000533209 NEFMP07197 916 aa15.9■□□□□ 0.14
SSBP3-214ENST00000533209 NFATC2IPQ8NCF5 419 aa15.9■□□□□ 0.14
SSBP3-214ENST00000533209 IL17REQ8NFR9 667 aa15.9■□□□□ 0.14
SSBP3-214ENST00000533209 SLC52A2Q9HAB3 445 aa15.9■□□□□ 0.14
SSBP3-214ENST00000533209 MRS2Q9HD23 443 aa15.9■□□□□ 0.14
SSBP3-214ENST00000533209 ITGB4P16144 1822 aa15.89■□□□□ 0.13
SSBP3-214ENST00000533209 ADAMTS7Q9UKP4 1686 aa15.89■□□□□ 0.13
SSBP3-214ENST00000533209 PALLDQ8WX93 1383 aa15.89■□□□□ 0.13
SSBP3-214ENST00000533209 CCDC146Q8IYE0 955 aa15.89■□□□□ 0.13
SSBP3-214ENST00000533209 SMARCC1Q92922 1105 aaPredicted RBP15.89■□□□□ 0.13
SSBP3-214ENST00000533209 ATG3Q9NT62 314 aa15.89■□□□□ 0.13
SSBP3-214ENST00000533209 LRRC4BQ9NT99 713 aa15.89■□□□□ 0.13
SSBP3-214ENST00000533209 ASAP1Q9ULH1 1129 aa15.89■□□□□ 0.13
SSBP3-214ENST00000533209 MRC1P22897 1456 aa15.89■□□□□ 0.13
SSBP3-214ENST00000533209 MAPK8IP3Q9UPT6 1336 aa15.89■□□□□ 0.13
SSBP3-214ENST00000533209 CEMIPQ8WUJ3 1361 aa15.88■□□□□ 0.13
SSBP3-214ENST00000533209 NFE2L2Q16236 605 aa15.88■□□□□ 0.13
SSBP3-214ENST00000533209 PNISRQ8TF01 805 aaKnown RBP15.88■□□□□ 0.13
SSBP3-214ENST00000533209 SCN11AQ9UI33 1791 aa15.87■□□□□ 0.13
SSBP3-214ENST00000533209 HTATSF1O43719 755 aaKnown RBP15.87■□□□□ 0.13
SSBP3-214ENST00000533209 KCNQ4P56696 695 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms