RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 TXNRD1Q16881 649 aa23.62■■□□□ 1.37
PHRF1-204ENST00000532550 NUP188Q5SRE5 1749 aa23.62■■□□□ 1.37
PHRF1-204ENST00000532550 KIF7Q2M1P5 1343 aa23.6■■□□□ 1.37
PHRF1-204ENST00000532550 RGPD3A6NKT7 1758 aaPredicted RBP23.6■■□□□ 1.37
PHRF1-204ENST00000532550 RGPD4Q7Z3J3 1758 aa23.6■■□□□ 1.37
PHRF1-204ENST00000532550 MEGF6O75095 1541 aa23.59■■□□□ 1.37
PHRF1-204ENST00000532550 MORC1Q86VD1 984 aa23.59■■□□□ 1.37
PHRF1-204ENST00000532550 NSD2O96028 1365 aa23.59■■□□□ 1.37
PHRF1-204ENST00000532550 NHSQ6T4R5 1651 aa23.58■■□□□ 1.37
PHRF1-204ENST00000532550 SYTL4Q96C24 671 aaPredicted RBP23.58■■□□□ 1.37
PHRF1-204ENST00000532550 ANKRD26Q9UPS8 1709 aa23.56■■□□□ 1.36
PHRF1-204ENST00000532550 PRIM1P49642 420 aaKnown RBP23.56■■□□□ 1.36
PHRF1-204ENST00000532550 EYA1Q99502 592 aa23.55■■□□□ 1.36
PHRF1-204ENST00000532550 STK32BQ9NY57 414 aa23.54■■□□□ 1.36
PHRF1-204ENST00000532550 LRP5O75197 1615 aa23.53■■□□□ 1.36
PHRF1-204ENST00000532550 ANO8Q9HCE9 1232 aaPredicted RBP23.53■■□□□ 1.36
PHRF1-204ENST00000532550 PCDH11XQ9BZA7 1347 aa23.53■■□□□ 1.36
PHRF1-204ENST00000532550 PCDH11YQ9BZA8 1340 aa23.53■■□□□ 1.36
PHRF1-204ENST00000532550 BTAF1O14981 1849 aa23.52■■□□□ 1.36
PHRF1-204ENST00000532550 EIF4A2Q14240 407 aaKnown RBP23.52■■□□□ 1.36
PHRF1-204ENST00000532550 SLC15A2Q16348 729 aa23.5■■□□□ 1.35
PHRF1-204ENST00000532550 SPG7Q9UQ90 795 aa23.5■■□□□ 1.35
PHRF1-204ENST00000532550 AMER1Q5JTC6 1135 aaPredicted RBP23.49■■□□□ 1.35
PHRF1-204ENST00000532550 SHANK3Q9BYB0 1731 aa23.49■■□□□ 1.35
PHRF1-204ENST00000532550 CYP27B1O15528 508 aa23.48■■□□□ 1.35
PHRF1-204ENST00000532550 SPON1Q9HCB6 807 aa23.48■■□□□ 1.35
PHRF1-204ENST00000532550 PER1O15534 1290 aaPredicted RBP23.47■■□□□ 1.35
PHRF1-204ENST00000532550 SLC27A3Q5K4L6 730 aa23.47■■□□□ 1.35
PHRF1-204ENST00000532550 NCAPD2Q15021 1401 aa23.46■■□□□ 1.35
PHRF1-204ENST00000532550 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.46■■□□□ 1.353e-8■■■□□ 14.7
PHRF1-204ENST00000532550 LRRC4BQ9NT99 713 aa23.45■■□□□ 1.34
PHRF1-204ENST00000532550 DOT1LQ8TEK3 1739 aa23.45■■□□□ 1.34
PHRF1-204ENST00000532550 CC2D1BQ5T0F9 858 aaKnown RBP23.43■■□□□ 1.34
PHRF1-204ENST00000532550 MPRIPQ6WCQ1 1025 aa23.43■■□□□ 1.34
PHRF1-204ENST00000532550 NKX1-1Q15270 411 aaPredicted RBP23.42■■□□□ 1.34
PHRF1-204ENST00000532550 PDGFDQ9GZP0 370 aaPredicted RBP23.42■■□□□ 1.34
PHRF1-204ENST00000532550 PPP1R1BQ9UD71 204 aaPredicted RBP23.42■■□□□ 1.34
PHRF1-204ENST00000532550 IGSF1Q8N6C5 1336 aa23.41■■□□□ 1.34
PHRF1-204ENST00000532550 IFNL2Q8IZJ0 200 aa23.41■■□□□ 1.34
PHRF1-204ENST00000532550 ZBTB7AO95365 584 aa23.4■■□□□ 1.34
PHRF1-204ENST00000532550 PKD1L3Q7Z443 1732 aa23.39■■□□□ 1.34
PHRF1-204ENST00000532550 KCNQ4P56696 695 aa23.39■■□□□ 1.33
PHRF1-204ENST00000532550 CCNL1Q9UK58 526 aaPredicted RBP23.39■■□□□ 1.33
PHRF1-204ENST00000532550 PHKG2P15735 406 aa23.38■■□□□ 1.33
PHRF1-204ENST00000532550 MTHFSP49914 203 aa23.38■■□□□ 1.33
PHRF1-204ENST00000532550 CNGB1Q14028 1251 aaPredicted RBP23.38■■□□□ 1.33
PHRF1-204ENST00000532550 PLEKHO1Q53GL0 409 aaPredicted RBP23.38■■□□□ 1.33
PHRF1-204ENST00000532550 ZNF827Q17R98 1081 aa23.37■■□□□ 1.33
PHRF1-204ENST00000532550 AKT1S1Q96B36 256 aa23.37■■□□□ 1.33
PHRF1-204ENST00000532550 ATF5Q9Y2D1 282 aaPredicted RBP23.37■■□□□ 1.33
PHRF1-204ENST00000532550 HMGB2P26583 209 aaKnown RBP23.36■■□□□ 1.33
PHRF1-204ENST00000532550 IL13P35225 146 aa23.36■■□□□ 1.33
PHRF1-204ENST00000532550 SMARCC1Q92922 1105 aaPredicted RBP23.36■■□□□ 1.33
PHRF1-204ENST00000532550 TFCP2L1Q9NZI6 479 aa23.36■■□□□ 1.33
PHRF1-204ENST00000532550 PLEKHG2Q9H7P9 1386 aa23.36■■□□□ 1.33
PHRF1-204ENST00000532550 AMOTQ4VCS5 1084 aa23.35■■□□□ 1.33
PHRF1-204ENST00000532550 SULT6B1Q6IMI4 303 aa23.35■■□□□ 1.33
PHRF1-204ENST00000532550 PIGBQ92521 554 aa23.35■■□□□ 1.33
PHRF1-204ENST00000532550 CASZ1Q86V15 1759 aa23.35■■□□□ 1.33
PHRF1-204ENST00000532550 LY75O60449 1722 aa23.34■■□□□ 1.33
PHRF1-204ENST00000532550 MTFR1LQ9H019 292 aa23.34■■□□□ 1.33
PHRF1-204ENST00000532550 PAPPAQ13219 1627 aa23.33■■□□□ 1.33
PHRF1-204ENST00000532550 NPC1L1Q9UHC9 1359 aa23.33■■□□□ 1.33
PHRF1-204ENST00000532550 AEBP1Q8IUX7 1158 aa23.33■■□□□ 1.33
PHRF1-204ENST00000532550 TMOD3Q9NYL9 352 aa23.33■■□□□ 1.33
PHRF1-204ENST00000532550 ITGB4P16144 1822 aa23.33■■□□□ 1.32
PHRF1-204ENST00000532550 PALLDQ8WX93 1383 aa23.32■■□□□ 1.32
PHRF1-204ENST00000532550 HSP90AB1P08238 724 aaKnown RBP23.32■■□□□ 1.32
PHRF1-204ENST00000532550 ZNF530Q6P9A1 599 aaPredicted RBP23.3■■□□□ 1.32
PHRF1-204ENST00000532550 DIAPH1O60610 1272 aaKnown RBP23.29■■□□□ 1.32
PHRF1-204ENST00000532550 PTGER2P43116 358 aa23.29■■□□□ 1.32
PHRF1-204ENST00000532550 C1orf141Q5JVX7 400 aa23.29■■□□□ 1.32
PHRF1-204ENST00000532550 SLC16A10Q8TF71 515 aa23.29■■□□□ 1.32
PHRF1-204ENST00000532550 DCAF5Q96JK2 942 aa23.29■■□□□ 1.32
PHRF1-204ENST00000532550 TOGARAM1Q9Y4F4 1720 aa23.29■■□□□ 1.32
PHRF1-204ENST00000532550 ERVV-2B6SEH9 535 aa23.28■■□□□ 1.32
PHRF1-204ENST00000532550 PNPLA7Q6ZV29 1317 aa23.28■■□□□ 1.32
PHRF1-204ENST00000532550 KDRP35968 1356 aa23.27■■□□□ 1.31
PHRF1-204ENST00000532550 ASAP1Q9ULH1 1129 aa23.26■■□□□ 1.31
PHRF1-204ENST00000532550 MSH5O43196 834 aa23.25■■□□□ 1.31
PHRF1-204ENST00000532550 HMOX1P09601 288 aa23.25■■□□□ 1.31
PHRF1-204ENST00000532550 DCAF8L1A6NGE4 600 aa23.24■■□□□ 1.31
PHRF1-204ENST00000532550 CABP4P57796 275 aa23.24■■□□□ 1.31
PHRF1-204ENST00000532550 LOC102724428A0A0B4J2F2 783 aa23.23■■□□□ 1.31
PHRF1-204ENST00000532550 SIK1P57059 783 aa23.23■■□□□ 1.31
PHRF1-204ENST00000532550 SGIP1Q9BQI5 828 aa23.23■■□□□ 1.31
PHRF1-204ENST00000532550 ATG3Q9NT62 314 aa23.23■■□□□ 1.31
PHRF1-204ENST00000532550 QSER1Q2KHR3 1735 aa23.22■■□□□ 1.31
PHRF1-204ENST00000532550 FLAD1Q8NFF5 587 aa23.22■■□□□ 1.31
PHRF1-204ENST00000532550 ARXQ96QS3 562 aa23.22■■□□□ 1.31
PHRF1-204ENST00000532550 POLD1P28340 1107 aa23.21■■□□□ 1.31
PHRF1-204ENST00000532550 ATP6V1AP38606 617 aa23.21■■□□□ 1.31
PHRF1-204ENST00000532550 COL23A1Q86Y22 540 aaPredicted RBP23.21■■□□□ 1.31
PHRF1-204ENST00000532550 AK7Q96M32 723 aa23.21■■□□□ 1.31
PHRF1-204ENST00000532550 U2SURPO15042 1029 aaKnown RBP23.2■■□□□ 1.3
PHRF1-204ENST00000532550 AKAP4Q5JQC9 854 aa23.2■■□□□ 1.3
PHRF1-204ENST00000532550 CFAP53Q96M91 514 aa23.2■■□□□ 1.3
PHRF1-204ENST00000532550 C5P01031 1676 aa23.19■■□□□ 1.3
PHRF1-204ENST00000532550 TAF1LQ8IZX4 1826 aa23.19■■□□□ 1.3
PHRF1-204ENST00000532550 NFATC2IPQ8NCF5 419 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms