RNA–Protein interactions for RNA: ENST00000531842.1

USF1-210, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 720 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-210ENST00000531842 USP31Q70CQ4 1352 aa12.88□□□□□ -0.35
USF1-210ENST00000531842 MSH5O43196 834 aa12.87□□□□□ -0.35
USF1-210ENST00000531842 POLD1P28340 1107 aa12.87□□□□□ -0.35
USF1-210ENST00000531842 SMIM5Q71RC9 77 aa12.87□□□□□ -0.35
USF1-210ENST00000531842 TMC1Q8TDI8 760 aa12.87□□□□□ -0.35
USF1-210ENST00000531842 SLC12A5Q9H2X9 1139 aa12.87□□□□□ -0.35
USF1-210ENST00000531842 TAF1LQ8IZX4 1826 aa12.86□□□□□ -0.35
USF1-210ENST00000531842 COL23A1Q86Y22 540 aaPredicted RBP12.86□□□□□ -0.35
USF1-210ENST00000531842 ZNF526Q8TF50 670 aaPredicted RBP12.86□□□□□ -0.35
USF1-210ENST00000531842 ATP10DQ9P241 1426 aa12.86□□□□□ -0.35
USF1-210ENST00000531842 C5P01031 1676 aa12.86□□□□□ -0.35
USF1-210ENST00000531842 MEGF6O75095 1541 aa12.85□□□□□ -0.35
USF1-210ENST00000531842 USHBP1Q8N6Y0 703 aa12.84□□□□□ -0.35
USF1-210ENST00000531842 SLC16A10Q8TF71 515 aa12.84□□□□□ -0.35
USF1-210ENST00000531842 A0A1W2PP64 1363 aa12.83□□□□□ -0.36
USF1-210ENST00000531842 TOGARAM1Q9Y4F4 1720 aa12.83□□□□□ -0.36
USF1-210ENST00000531842 SLC27A3Q5K4L6 730 aa12.83□□□□□ -0.36
USF1-210ENST00000531842 AMIGO3Q86WK7 504 aa12.83□□□□□ -0.36
USF1-210ENST00000531842 CCNL1Q9UK58 526 aaPredicted RBP12.83□□□□□ -0.36
USF1-210ENST00000531842 ANKRD36BQ8N2N9 1353 aa12.82□□□□□ -0.36
USF1-210ENST00000531842 IP6K1Q92551 441 aa12.82□□□□□ -0.36
USF1-210ENST00000531842 ITGB4P16144 1822 aa12.82□□□□□ -0.36
USF1-210ENST00000531842 MAP3K19Q56UN5 1328 aa12.81□□□□□ -0.36
USF1-210ENST00000531842 EDC4Q6P2E9 1401 aaKnown RBP12.8□□□□□ -0.36
USF1-210ENST00000531842 UBR3Q6ZT12 1888 aa12.79□□□□□ -0.36
USF1-210ENST00000531842 HOXC9P31274 260 aa12.79□□□□□ -0.36
USF1-210ENST00000531842 HDGFL2Q7Z4V5 671 aaPredicted RBP12.79□□□□□ -0.36
USF1-210ENST00000531842 ZCRB1Q8TBF4 217 aaKnown RBP12.79□□□□□ -0.36
USF1-210ENST00000531842 RRS1Q15050 365 aaKnown RBP12.78□□□□□ -0.36
USF1-210ENST00000531842 NBPF6Q5VWK0 638 aa12.78□□□□□ -0.36
USF1-210ENST00000531842 NBPF4Q96M43 638 aa12.78□□□□□ -0.36
USF1-210ENST00000531842 C4BP0C0L5 1744 aa12.77□□□□□ -0.36
USF1-210ENST00000531842 GRIN3BO60391 1043 aa12.77□□□□□ -0.37
USF1-210ENST00000531842 CARD11Q9BXL7 1154 aa12.77□□□□□ -0.37
USF1-210ENST00000531842 N4BP2Q86UW6 1770 aaPredicted RBP12.76□□□□□ -0.37
USF1-210ENST00000531842 PHF14O94880 888 aa12.76□□□□□ -0.37
USF1-210ENST00000531842 AMPHP49418 695 aa12.76□□□□□ -0.37
USF1-210ENST00000531842 GPBP1L1Q9HC44 474 aaPredicted RBP12.76□□□□□ -0.37
USF1-210ENST00000531842 ADCY9O60503 1353 aa12.76□□□□□ -0.37
USF1-210ENST00000531842 USP47Q96K76 1375 aa12.76□□□□□ -0.37
USF1-210ENST00000531842 HSPA6P17066 643 aa12.74□□□□□ -0.37
USF1-210ENST00000531842 MPRIPQ6WCQ1 1025 aa12.74□□□□□ -0.37
USF1-210ENST00000531842 MAP2P11137 1827 aaKnown RBP12.74□□□□□ -0.37
USF1-210ENST00000531842 KIAA1551Q9HCM1 1747 aa12.74□□□□□ -0.37
USF1-210ENST00000531842 PALLDQ8WX93 1383 aa12.73□□□□□ -0.37
USF1-210ENST00000531842 IGSF1Q8N6C5 1336 aa12.73□□□□□ -0.37
USF1-210ENST00000531842 COG3Q96JB2 828 aa12.73□□□□□ -0.37
USF1-210ENST00000531842 TERF2IPQ9NYB0 399 aa12.73□□□□□ -0.37
USF1-210ENST00000531842 KIF20BQ96Q89 1820 aa12.72□□□□□ -0.37
USF1-210ENST00000531842 GGNBP2Q9H3C7 697 aa12.72□□□□□ -0.37
USF1-210ENST00000531842 CYP27B1O15528 508 aa12.71□□□□□ -0.37
USF1-210ENST00000531842 HSP90AB2PQ58FF8 381 aa12.71□□□□□ -0.37
USF1-210ENST00000531842 CD2APQ9Y5K6 639 aa12.71□□□□□ -0.37
USF1-210ENST00000531842 KIF3CO14782 793 aa12.7□□□□□ -0.38
USF1-210ENST00000531842 TESK2Q96S53 571 aa12.7□□□□□ -0.38
USF1-210ENST00000531842 PKD1L3Q7Z443 1732 aa12.7□□□□□ -0.38
USF1-210ENST00000531842 LINC00116Q8NCU8 138 aa12.69□□□□□ -0.38
USF1-210ENST00000531842 RAPGEF4Q8WZA2 1011 aa12.69□□□□□ -0.38
USF1-210ENST00000531842 ST20-MTHFSA0A0A6YYL1 179 aa12.68□□□□□ -0.38
USF1-210ENST00000531842 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.68□□□□□ -0.38
USF1-210ENST00000531842 TATP17735 454 aaPredicted RBP12.68□□□□□ -0.38
USF1-210ENST00000531842 HTRA3P83110 453 aa12.68□□□□□ -0.38
USF1-210ENST00000531842 PIGBQ92521 554 aa12.68□□□□□ -0.38
USF1-210ENST00000531842 AK7Q96M32 723 aa12.68□□□□□ -0.38
USF1-210ENST00000531842 KIF13BQ9NQT8 1826 aa12.67□□□□□ -0.38
USF1-210ENST00000531842 FYB1O15117 783 aa12.67□□□□□ -0.38
USF1-210ENST00000531842 PCDH11XQ9BZA7 1347 aa12.66□□□□□ -0.38
USF1-210ENST00000531842 PCDH11YQ9BZA8 1340 aa12.66□□□□□ -0.38
USF1-210ENST00000531842 ITPK1Q13572 414 aa12.66□□□□□ -0.38
USF1-210ENST00000531842 EMILIN1Q9Y6C2 1016 aa12.66□□□□□ -0.38
USF1-210ENST00000531842 RTL1A6NKG5 1358 aa12.66□□□□□ -0.38
USF1-210ENST00000531842 CICQ96RK0 1608 aaPredicted RBP12.66□□□□□ -0.38
USF1-210ENST00000531842 BRCA1P38398 1863 aaKnown RBP12.65□□□□□ -0.38
USF1-210ENST00000531842 ASAP1Q9ULH1 1129 aa12.65□□□□□ -0.38
USF1-210ENST00000531842 WDR90Q96KV7 1748 aa12.65□□□□□ -0.38
USF1-210ENST00000531842 PCNTO95613 3336 aa12.65□□□□□ -0.38
USF1-210ENST00000531842 PXDNLA1KZ92 1463 aa12.65□□□□□ -0.38
USF1-210ENST00000531842 A0A0G2JLW4 131 aa12.64□□□□□ -0.39
USF1-210ENST00000531842 NMRK2Q9NPI5 230 aa12.64□□□□□ -0.39
USF1-210ENST00000531842 MYH14Q7Z406 1995 aaKnown RBP12.63□□□□□ -0.39
USF1-210ENST00000531842 SMG6Q86US8 1419 aaKnown RBP12.63□□□□□ -0.39
USF1-210ENST00000531842 GNPATO15228 680 aa12.63□□□□□ -0.39
USF1-210ENST00000531842 MMP10P09238 476 aa12.63□□□□□ -0.39
USF1-210ENST00000531842 DNAJC5GQ8N7S2 189 aa12.63□□□□□ -0.39
USF1-210ENST00000531842 FLAD1Q8NFF5 587 aa12.63□□□□□ -0.39
USF1-210ENST00000531842 INSRP06213 1382 aa12.63□□□□□ -0.39
USF1-210ENST00000531842 C4AP0C0L4 1744 aa12.62□□□□□ -0.39
USF1-210ENST00000531842 LOC102724428A0A0B4J2F2 783 aa12.62□□□□□ -0.39
USF1-210ENST00000531842 PPM1GO15355 546 aaPredicted RBP12.62□□□□□ -0.39
USF1-210ENST00000531842 SIK1P57059 783 aa12.62□□□□□ -0.39
USF1-210ENST00000531842 BCS1LQ9Y276 419 aa12.62□□□□□ -0.39
USF1-210ENST00000531842 CGNL1Q0VF96 1302 aa12.62□□□□□ -0.39
USF1-210ENST00000531842 COL5A3P25940 1745 aaPredicted RBP12.61□□□□□ -0.39
USF1-210ENST00000531842 ANKRD26Q9UPS8 1709 aa12.6□□□□□ -0.39
USF1-210ENST00000531842 FLT4P35916 1363 aa12.6□□□□□ -0.39
USF1-210ENST00000531842 TONSLQ96HA7 1378 aa12.6□□□□□ -0.39
USF1-210ENST00000531842 CAPN15O75808 1086 aa12.6□□□□□ -0.39
USF1-210ENST00000531842 SSFA2P28290 1259 aa12.6□□□□□ -0.39
USF1-210ENST00000531842 ATP6V1AP38606 617 aa12.6□□□□□ -0.39
USF1-210ENST00000531842 ARHGAP27Q6ZUM4 889 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms