RNA–Protein interactions for RNA: ENST00000531539.5

FOXR1-202, Transcript of forkhead box R1, humanhuman

TSL 1 (best)

Gene FOXR1, Length 1,053 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR1-202ENST00000531539 MEGF6O75095 1541 aa19.61■□□□□ 0.73
FOXR1-202ENST00000531539 BCL9O00512 1426 aa19.59■□□□□ 0.73
FOXR1-202ENST00000531539 NPC1L1Q9UHC9 1359 aa19.59■□□□□ 0.73
FOXR1-202ENST00000531539 PLSCR1O15162 318 aa19.59■□□□□ 0.73
FOXR1-202ENST00000531539 PRIM1P49642 420 aaKnown RBP19.58■□□□□ 0.72
FOXR1-202ENST00000531539 SYTL4Q96C24 671 aaPredicted RBP19.58■□□□□ 0.72
FOXR1-202ENST00000531539 SPG7Q9UQ90 795 aa19.58■□□□□ 0.72
FOXR1-202ENST00000531539 KAT6BQ8WYB5 2073 aa19.58■□□□□ 0.72
FOXR1-202ENST00000531539 IL13P35225 146 aa19.57■□□□□ 0.72
FOXR1-202ENST00000531539 DDX10Q13206 875 aaKnown RBP19.56■□□□□ 0.72
FOXR1-202ENST00000531539 IGSF1Q8N6C5 1336 aa19.55■□□□□ 0.72
FOXR1-202ENST00000531539 PSDA5PKW4 1024 aaPredicted RBP19.55■□□□□ 0.72
FOXR1-202ENST00000531539 CYP27B1O15528 508 aa19.55■□□□□ 0.72
FOXR1-202ENST00000531539 TNS1Q9HBL0 1735 aaKnown RBP19.55■□□□□ 0.72
FOXR1-202ENST00000531539 PCDH11XQ9BZA7 1347 aa19.54■□□□□ 0.72
FOXR1-202ENST00000531539 PCDH11YQ9BZA8 1340 aa19.54■□□□□ 0.72
FOXR1-202ENST00000531539 DIAPH1O60610 1272 aaKnown RBP19.54■□□□□ 0.72
FOXR1-202ENST00000531539 NBPF14Q5TI25 921 aa19.54■□□□□ 0.72
FOXR1-202ENST00000531539 SULT6B1Q6IMI4 303 aa19.54■□□□□ 0.72
FOXR1-202ENST00000531539 PROM2Q8N271 834 aa19.54■□□□□ 0.72
FOXR1-202ENST00000531539 PARD3Q8TEW0 1356 aa19.54■□□□□ 0.72
FOXR1-202ENST00000531539 SBF2Q86WG5 1849 aa19.53■□□□□ 0.72
FOXR1-202ENST00000531539 AEBP1Q8IUX7 1158 aa19.53■□□□□ 0.72
FOXR1-202ENST00000531539 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.53■□□□□ 0.72
FOXR1-202ENST00000531539 R3HDM1Q15032 1099 aaKnown RBP19.52■□□□□ 0.72
FOXR1-202ENST00000531539 TXNRD1Q16881 649 aa19.52■□□□□ 0.72
FOXR1-202ENST00000531539 PLEKHO1Q53GL0 409 aaPredicted RBP19.52■□□□□ 0.72
FOXR1-202ENST00000531539 NCAPD2Q15021 1401 aa19.51■□□□□ 0.71
FOXR1-202ENST00000531539 HMOX1P09601 288 aa19.5■□□□□ 0.71
FOXR1-202ENST00000531539 PPP2R1AP30153 589 aa19.5■□□□□ 0.71
FOXR1-202ENST00000531539 IFNL2Q8IZJ0 200 aa19.5■□□□□ 0.71
FOXR1-202ENST00000531539 CFAP53Q96M91 514 aa19.49■□□□□ 0.71
FOXR1-202ENST00000531539 U2SURPO15042 1029 aaKnown RBP19.48■□□□□ 0.71
FOXR1-202ENST00000531539 PHKG2P15735 406 aa19.48■□□□□ 0.71
FOXR1-202ENST00000531539 NKX1-1Q15270 411 aaPredicted RBP19.48■□□□□ 0.71
FOXR1-202ENST00000531539 AMOTQ4VCS5 1084 aa19.48■□□□□ 0.71
FOXR1-202ENST00000531539 MPRIPQ6WCQ1 1025 aa19.48■□□□□ 0.71
FOXR1-202ENST00000531539 ZNF530Q6P9A1 599 aaPredicted RBP19.47■□□□□ 0.71
FOXR1-202ENST00000531539 NHSQ6T4R5 1651 aa19.43■□□□□ 0.7
FOXR1-202ENST00000531539 SHANK3Q9BYB0 1731 aa19.43■□□□□ 0.7
FOXR1-202ENST00000531539 KCNQ4P56696 695 aa19.43■□□□□ 0.7
FOXR1-202ENST00000531539 C1orf141Q5JVX7 400 aa19.43■□□□□ 0.7
FOXR1-202ENST00000531539 PIGBQ92521 554 aa19.43■□□□□ 0.7
FOXR1-202ENST00000531539 STK32BQ9NY57 414 aa19.43■□□□□ 0.7
FOXR1-202ENST00000531539 NUDCQ9Y266 331 aa19.43■□□□□ 0.7
FOXR1-202ENST00000531539 LRRC4BQ9NT99 713 aa19.42■□□□□ 0.7
FOXR1-202ENST00000531539 HSP90AB1P08238 724 aaKnown RBP19.41■□□□□ 0.7
FOXR1-202ENST00000531539 ANO8Q9HCE9 1232 aaPredicted RBP19.41■□□□□ 0.7
FOXR1-202ENST00000531539 TMOD3Q9NYL9 352 aa19.41■□□□□ 0.7
FOXR1-202ENST00000531539 KDRP35968 1356 aa19.41■□□□□ 0.7
FOXR1-202ENST00000531539 BTAF1O14981 1849 aa19.4■□□□□ 0.7
FOXR1-202ENST00000531539 SLC27A3Q5K4L6 730 aa19.4■□□□□ 0.7
FOXR1-202ENST00000531539 DCAF5Q96JK2 942 aa19.4■□□□□ 0.7
FOXR1-202ENST00000531539 RALBP1Q15311 655 aa19.39■□□□□ 0.69
FOXR1-202ENST00000531539 SLC15A2Q16348 729 aa19.39■□□□□ 0.69
FOXR1-202ENST00000531539 CCNL1Q9UK58 526 aaPredicted RBP19.39■□□□□ 0.69
FOXR1-202ENST00000531539 PKD1L3Q7Z443 1732 aa19.39■□□□□ 0.69
FOXR1-202ENST00000531539 ERVV-2B6SEH9 535 aa19.38■□□□□ 0.69
FOXR1-202ENST00000531539 U2AF1L5P0DN76 240 aaPredicted RBP19.38■□□□□ 0.69
FOXR1-202ENST00000531539 U2AF1Q01081 240 aaKnown RBP eCLIP19.38■□□□□ 0.69
FOXR1-202ENST00000531539 MTHFSDQ2M296 383 aaKnown RBP19.38■□□□□ 0.69
FOXR1-202ENST00000531539 DOT1LQ8TEK3 1739 aa19.38■□□□□ 0.69
FOXR1-202ENST00000531539 RREB1Q92766 1687 aa19.38■□□□□ 0.69
FOXR1-202ENST00000531539 SMARCC1Q92922 1105 aaPredicted RBP19.38■□□□□ 0.69
FOXR1-202ENST00000531539 PLEKHG2Q9H7P9 1386 aa19.38■□□□□ 0.69
FOXR1-202ENST00000531539 NUP188Q5SRE5 1749 aa19.37■□□□□ 0.69
FOXR1-202ENST00000531539 CABP4P57796 275 aa19.37■□□□□ 0.69
FOXR1-202ENST00000531539 AKAP4Q5JQC9 854 aa19.37■□□□□ 0.69
FOXR1-202ENST00000531539 COL3A1P02461 1466 aaPredicted RBP19.36■□□□□ 0.69
FOXR1-202ENST00000531539 ZNF316A6NFI3 1004 aaPredicted RBP19.36■□□□□ 0.69
FOXR1-202ENST00000531539 ASAP1Q9ULH1 1129 aa19.36■□□□□ 0.69
FOXR1-202ENST00000531539 LGR6Q9HBX8 967 aa19.35■□□□□ 0.69
FOXR1-202ENST00000531539 RGPD3A6NKT7 1758 aaPredicted RBP19.34■□□□□ 0.69
FOXR1-202ENST00000531539 RGPD4Q7Z3J3 1758 aa19.34■□□□□ 0.69
FOXR1-202ENST00000531539 PRKAR2BP31323 418 aa19.34■□□□□ 0.69
FOXR1-202ENST00000531539 NFATC2IPQ8NCF5 419 aa19.34■□□□□ 0.69
FOXR1-202ENST00000531539 PDGFDQ9GZP0 370 aaPredicted RBP19.34■□□□□ 0.69
FOXR1-202ENST00000531539 PALLDQ8WX93 1383 aa19.33■□□□□ 0.69
FOXR1-202ENST00000531539 ZNF827Q17R98 1081 aa19.33■□□□□ 0.68
FOXR1-202ENST00000531539 PHACTR3Q96KR7 559 aa19.33■□□□□ 0.68
FOXR1-202ENST00000531539 ATG3Q9NT62 314 aa19.33■□□□□ 0.68
FOXR1-202ENST00000531539 FCHSD2O94868 740 aa19.32■□□□□ 0.68
FOXR1-202ENST00000531539 AKT1S1Q96B36 256 aa19.32■□□□□ 0.68
FOXR1-202ENST00000531539 RSPH6AQ9H0K4 717 aa19.32■□□□□ 0.68
FOXR1-202ENST00000531539 TFCP2L1Q9NZI6 479 aa19.32■□□□□ 0.68
FOXR1-202ENST00000531539 RNMTO43148 476 aaKnown RBP19.31■□□□□ 0.68
FOXR1-202ENST00000531539 RBM42Q9BTD8 480 aaKnown RBP19.31■□□□□ 0.68
FOXR1-202ENST00000531539 GAS2L2Q8NHY3 880 aa19.3■□□□□ 0.68
FOXR1-202ENST00000531539 KDM6AO15550 1401 aaPredicted RBP19.3■□□□□ 0.68
FOXR1-202ENST00000531539 ITGB4P16144 1822 aa19.3■□□□□ 0.68
FOXR1-202ENST00000531539 TOGARAM1Q9Y4F4 1720 aa19.29■□□□□ 0.68
FOXR1-202ENST00000531539 LOC102724428A0A0B4J2F2 783 aa19.29■□□□□ 0.68
FOXR1-202ENST00000531539 ZBTB7AO95365 584 aa19.29■□□□□ 0.68
FOXR1-202ENST00000531539 ATP6V1AP38606 617 aa19.29■□□□□ 0.68
FOXR1-202ENST00000531539 SIK1P57059 783 aa19.29■□□□□ 0.68
FOXR1-202ENST00000531539 SPON1Q9HCB6 807 aa19.29■□□□□ 0.68
FOXR1-202ENST00000531539 ATF5Q9Y2D1 282 aaPredicted RBP19.29■□□□□ 0.68
FOXR1-202ENST00000531539 GNAT3A8MTJ3 354 aa19.28■□□□□ 0.68
FOXR1-202ENST00000531539 HMGB2P26583 209 aaKnown RBP19.28■□□□□ 0.68
FOXR1-202ENST00000531539 MYBBP1AQ9BQG0 1328 aaKnown RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms