RNA–Protein interactions for RNA: ENST00000531405.5

SSSCA1-206, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 2 BASIC

Gene SSSCA1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-206ENST00000531405 GGNBP2Q9H3C7 697 aa25.85■■□□□ 1.73
SSSCA1-206ENST00000531405 COL24A1Q17RW2 1714 aa25.85■■□□□ 1.73
SSSCA1-206ENST00000531405 RTL1A6NKG5 1358 aa25.84■■□□□ 1.73
SSSCA1-206ENST00000531405 KCNQ4P56696 695 aa25.84■■□□□ 1.73
SSSCA1-206ENST00000531405 FYB1O15117 783 aa25.83■■□□□ 1.73
SSSCA1-206ENST00000531405 PRIM1P49642 420 aaKnown RBP25.83■■□□□ 1.73
SSSCA1-206ENST00000531405 TMF1P82094 1093 aa25.83■■□□□ 1.73
SSSCA1-206ENST00000531405 AKT1S1Q96B36 256 aa25.83■■□□□ 1.73
SSSCA1-206ENST00000531405 NSD2O96028 1365 aa25.82■■□□□ 1.72
SSSCA1-206ENST00000531405 USHBP1Q8N6Y0 703 aa25.82■■□□□ 1.72
SSSCA1-206ENST00000531405 ZCRB1Q8TBF4 217 aaKnown RBP25.82■■□□□ 1.72
SSSCA1-206ENST00000531405 ARXQ96QS3 562 aa25.82■■□□□ 1.72
SSSCA1-206ENST00000531405 SLC27A3Q5K4L6 730 aa25.81■■□□□ 1.72
SSSCA1-206ENST00000531405 NBPF6Q5VWK0 638 aa25.81■■□□□ 1.72
SSSCA1-206ENST00000531405 NBPF4Q96M43 638 aa25.81■■□□□ 1.72
SSSCA1-206ENST00000531405 GOLGB1Q14789 3259 aaKnown RBP25.81■■□□□ 1.72
SSSCA1-206ENST00000531405 PNPLA7Q6ZV29 1317 aa25.78■■□□□ 1.72
SSSCA1-206ENST00000531405 SMG6Q86US8 1419 aaKnown RBP25.77■■□□□ 1.72
SSSCA1-206ENST00000531405 ITGB4P16144 1822 aa25.77■■□□□ 1.72
SSSCA1-206ENST00000531405 TRIM26Q12899 539 aaPredicted RBP25.76■■□□□ 1.71
SSSCA1-206ENST00000531405 TAF1LQ8IZX4 1826 aa25.75■■□□□ 1.71
SSSCA1-206ENST00000531405 C5P01031 1676 aa25.75■■□□□ 1.71
SSSCA1-206ENST00000531405 TFCP2L1Q9NZI6 479 aa25.75■■□□□ 1.71
SSSCA1-206ENST00000531405 MAP2P11137 1827 aaKnown RBP25.74■■□□□ 1.71
SSSCA1-206ENST00000531405 MAP3K5Q99683 1374 aa25.74■■□□□ 1.71
SSSCA1-206ENST00000531405 HSP90AB2PQ58FF8 381 aa25.74■■□□□ 1.71
SSSCA1-206ENST00000531405 TOGARAM1Q9Y4F4 1720 aa25.74■■□□□ 1.71
SSSCA1-206ENST00000531405 RAPGEF4Q8WZA2 1011 aa25.73■■□□□ 1.71
SSSCA1-206ENST00000531405 INSRP06213 1382 aa25.72■■□□□ 1.71
SSSCA1-206ENST00000531405 KLHL34Q8N239 644 aa25.72■■□□□ 1.71
SSSCA1-206ENST00000531405 SLC16A10Q8TF71 515 aa25.72■■□□□ 1.71
SSSCA1-206ENST00000531405 CCNL1Q9UK58 526 aaPredicted RBP25.72■■□□□ 1.71
SSSCA1-206ENST00000531405 PKD1L3Q7Z443 1732 aa25.71■■□□□ 1.71
SSSCA1-206ENST00000531405 ANKRD26Q9UPS8 1709 aa25.71■■□□□ 1.71
SSSCA1-206ENST00000531405 FLT4P35916 1363 aa25.71■■□□□ 1.71
SSSCA1-206ENST00000531405 CGNL1Q0VF96 1302 aa25.7■■□□□ 1.71
SSSCA1-206ENST00000531405 TATP17735 454 aaPredicted RBP25.7■■□□□ 1.7
SSSCA1-206ENST00000531405 CARD14Q9BXL6 1004 aa25.7■■□□□ 1.7
SSSCA1-206ENST00000531405 NSD3Q9BZ95 1437 aa25.7■■□□□ 1.7
SSSCA1-206ENST00000531405 CDCA8Q53HL2 280 aa25.69■■□□□ 1.7
SSSCA1-206ENST00000531405 ZNF784Q8NCA9 323 aaPredicted RBP25.69■■□□□ 1.7
SSSCA1-206ENST00000531405 POLD1P28340 1107 aa25.68■■□□□ 1.7
SSSCA1-206ENST00000531405 EMILIN1Q9Y6C2 1016 aa25.67■■□□□ 1.7
SSSCA1-206ENST00000531405 PCDH11XQ9BZA7 1347 aa25.66■■□□□ 1.7
SSSCA1-206ENST00000531405 PCDH11YQ9BZA8 1340 aa25.66■■□□□ 1.7
SSSCA1-206ENST00000531405 KIF24Q5T7B8 1368 aa25.66■■□□□ 1.7
SSSCA1-206ENST00000531405 GPR162Q16538 588 aa25.64■■□□□ 1.7
SSSCA1-206ENST00000531405 MSH5O43196 834 aa25.63■■□□□ 1.69
SSSCA1-206ENST00000531405 COL23A1Q86Y22 540 aaPredicted RBP25.63■■□□□ 1.69
SSSCA1-206ENST00000531405 CYP27B1O15528 508 aa25.62■■□□□ 1.69
SSSCA1-206ENST00000531405 MPRIPQ6WCQ1 1025 aa25.62■■□□□ 1.69
SSSCA1-206ENST00000531405 NLGN2Q8NFZ4 835 aa25.62■■□□□ 1.69
SSSCA1-206ENST00000531405 C4BP0C0L5 1744 aa25.61■■□□□ 1.69
SSSCA1-206ENST00000531405 PPM1GO15355 546 aaPredicted RBP25.61■■□□□ 1.69
SSSCA1-206ENST00000531405 PELP1Q8IZL8 1130 aaKnown RBP25.61■■□□□ 1.69
SSSCA1-206ENST00000531405 UBR3Q6ZT12 1888 aa25.6■■□□□ 1.69
SSSCA1-206ENST00000531405 PALLDQ8WX93 1383 aa25.6■■□□□ 1.69
SSSCA1-206ENST00000531405 MSL1Q68DK7 614 aa25.59■■□□□ 1.69
SSSCA1-206ENST00000531405 NCAPD2Q15021 1401 aa25.59■■□□□ 1.69
SSSCA1-206ENST00000531405 POLR3GLQ9BT43 218 aa25.54■■□□□ 1.68
SSSCA1-206ENST00000531405 WASHC2AQ641Q2 1341 aa25.53■■□□□ 1.68
SSSCA1-206ENST00000531405 PIGBQ92521 554 aa25.52■■□□□ 1.68
SSSCA1-206ENST00000531405 EYA1Q99502 592 aa25.52■■□□□ 1.68
SSSCA1-206ENST00000531405 TIMELESSQ9UNS1 1208 aa25.51■■□□□ 1.67
SSSCA1-206ENST00000531405 AMIGO3Q86WK7 504 aa25.5■■□□□ 1.67
SSSCA1-206ENST00000531405 PCGF6Q9BYE7 350 aa25.5■■□□□ 1.67
SSSCA1-206ENST00000531405 POLKQ9UBT6 870 aa25.5■■□□□ 1.67
SSSCA1-206ENST00000531405 SPG7Q9UQ90 795 aa25.5■■□□□ 1.67
SSSCA1-206ENST00000531405 YBX3P16989 372 aaKnown RBP eCLIP25.49■■□□□ 1.67
SSSCA1-206ENST00000531405 NKX1-1Q15270 411 aaPredicted RBP25.49■■□□□ 1.67
SSSCA1-206ENST00000531405 SMIM5Q71RC9 77 aa25.49■■□□□ 1.67
SSSCA1-206ENST00000531405 SMARCC1Q92922 1105 aaPredicted RBP25.49■■□□□ 1.67
SSSCA1-206ENST00000531405 TNNT2P45379 298 aaPredicted RBP25.48■■□□□ 1.67
SSSCA1-206ENST00000531405 AK7Q96M32 723 aa25.48■■□□□ 1.67
SSSCA1-206ENST00000531405 FLAD1Q8NFF5 587 aa25.47■■□□□ 1.67
SSSCA1-206ENST00000531405 PHF14O94880 888 aa25.46■■□□□ 1.67
SSSCA1-206ENST00000531405 EIF4A2Q14240 407 aaKnown RBP25.44■■□□□ 1.66
SSSCA1-206ENST00000531405 TMOD3Q9NYL9 352 aa25.44■■□□□ 1.66
SSSCA1-206ENST00000531405 CLSPNQ9HAW4 1339 aa25.43■■□□□ 1.66
SSSCA1-206ENST00000531405 LOC102724428A0A0B4J2F2 783 aa25.43■■□□□ 1.66
SSSCA1-206ENST00000531405 PHKG2P15735 406 aa25.43■■□□□ 1.66
SSSCA1-206ENST00000531405 HMGB2P26583 209 aaKnown RBP25.43■■□□□ 1.66
SSSCA1-206ENST00000531405 SIK1P57059 783 aa25.43■■□□□ 1.66
SSSCA1-206ENST00000531405 LINC00116Q8NCU8 138 aa25.43■■□□□ 1.66
SSSCA1-206ENST00000531405 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.43■■□□□ 1.66
SSSCA1-206ENST00000531405 ASAP1Q9ULH1 1129 aa25.43■■□□□ 1.66
SSSCA1-206ENST00000531405 C1QTNF8P60827 252 aa25.42■■□□□ 1.66
SSSCA1-206ENST00000531405 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.41■■□□□ 1.66
SSSCA1-206ENST00000531405 IFNL2Q8IZJ0 200 aa25.41■■□□□ 1.66
SSSCA1-206ENST00000531405 CD2APQ9Y5K6 639 aa25.41■■□□□ 1.66
SSSCA1-206ENST00000531405 GRIN3BO60391 1043 aa25.4■■□□□ 1.66
SSSCA1-206ENST00000531405 SENP3-EIF4A1A0A087X0R7 540 aa25.39■■□□□ 1.66
SSSCA1-206ENST00000531405 ITPK1Q13572 414 aa25.39■■□□□ 1.66
SSSCA1-206ENST00000531405 COL5A3P25940 1745 aaPredicted RBP25.38■■□□□ 1.65
SSSCA1-206ENST00000531405 HSPA5P11021 654 aaKnown RBP25.38■■□□□ 1.65
SSSCA1-206ENST00000531405 SSFA2P28290 1259 aa25.37■■□□□ 1.65
SSSCA1-206ENST00000531405 PANK3Q9H999 370 aa25.37■■□□□ 1.65
SSSCA1-206ENST00000531405 ATG3Q9NT62 314 aa25.37■■□□□ 1.65
SSSCA1-206ENST00000531405 GIGYF1O75420 1035 aaPredicted RBP25.36■■□□□ 1.65
SSSCA1-206ENST00000531405 ATP6V1AP38606 617 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms