RNA–Protein interactions for RNA: ENST00000531158.1

CHMP4A-205, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 4

Gene CHMP4A, Length 563 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-205ENST00000531158 ITGB4P16144 1822 aa13.13□□□□□ -0.31
CHMP4A-205ENST00000531158 KIF20BQ96Q89 1820 aa13.13□□□□□ -0.31
CHMP4A-205ENST00000531158 TOGARAM1Q9Y4F4 1720 aa13.13□□□□□ -0.31
CHMP4A-205ENST00000531158 PRELPP51888 382 aa13.12□□□□□ -0.31
CHMP4A-205ENST00000531158 PNPLA7Q6ZV29 1317 aa13.12□□□□□ -0.31
CHMP4A-205ENST00000531158 SLC34A2O95436 690 aa13.11□□□□□ -0.31
CHMP4A-205ENST00000531158 FBLN1P23142 703 aa13.11□□□□□ -0.31
CHMP4A-205ENST00000531158 KCNQ4P56696 695 aa13.11□□□□□ -0.31
CHMP4A-205ENST00000531158 TMC1Q8TDI8 760 aa13.11□□□□□ -0.31
CHMP4A-205ENST00000531158 ZNF526Q8TF50 670 aaPredicted RBP13.11□□□□□ -0.31
CHMP4A-205ENST00000531158 CARD11Q9BXL7 1154 aa13.11□□□□□ -0.31
CHMP4A-205ENST00000531158 GRIN3BO60391 1043 aa13.1□□□□□ -0.31
CHMP4A-205ENST00000531158 TNS4Q8IZW8 715 aa13.09□□□□□ -0.31
CHMP4A-205ENST00000531158 IP6K1Q92551 441 aa13.09□□□□□ -0.31
CHMP4A-205ENST00000531158 TESK2Q96S53 571 aa13.09□□□□□ -0.31
CHMP4A-205ENST00000531158 PCGF6Q9BYE7 350 aa13.09□□□□□ -0.31
CHMP4A-205ENST00000531158 MAP3K19Q56UN5 1328 aa13.09□□□□□ -0.31
CHMP4A-205ENST00000531158 ANKRD36BQ8N2N9 1353 aa13.08□□□□□ -0.31
CHMP4A-205ENST00000531158 YBX3P16989 372 aaKnown RBP eCLIP13.08□□□□□ -0.32
CHMP4A-205ENST00000531158 APLP1P51693 650 aa13.08□□□□□ -0.32
CHMP4A-205ENST00000531158 HDGFL2Q7Z4V5 671 aaPredicted RBP13.08□□□□□ -0.32
CHMP4A-205ENST00000531158 DDX54Q8TDD1 881 aaKnown RBP13.08□□□□□ -0.32
CHMP4A-205ENST00000531158 LTV1Q96GA3 475 aaPredicted RBP13.08□□□□□ -0.32
CHMP4A-205ENST00000531158 PKD1L3Q7Z443 1732 aa13.08□□□□□ -0.32
CHMP4A-205ENST00000531158 TRIM26Q12899 539 aaPredicted RBP13.07□□□□□ -0.32
CHMP4A-205ENST00000531158 DNAJC5GQ8N7S2 189 aa13.07□□□□□ -0.32
CHMP4A-205ENST00000531158 NLGN2Q8NFZ4 835 aa13.07□□□□□ -0.32
CHMP4A-205ENST00000531158 UBR3Q6ZT12 1888 aa13.07□□□□□ -0.32
CHMP4A-205ENST00000531158 ANKRD26Q9UPS8 1709 aa13.07□□□□□ -0.32
CHMP4A-205ENST00000531158 POLD1P28340 1107 aa13.06□□□□□ -0.32
CHMP4A-205ENST00000531158 HOXC9P31274 260 aa13.06□□□□□ -0.32
CHMP4A-205ENST00000531158 PRIM1P49642 420 aaKnown RBP13.06□□□□□ -0.32
CHMP4A-205ENST00000531158 SLC27A3Q5K4L6 730 aa13.06□□□□□ -0.32
CHMP4A-205ENST00000531158 TERF2IPQ9NYB0 399 aa13.06□□□□□ -0.32
CHMP4A-205ENST00000531158 MAP2P11137 1827 aaKnown RBP13.06□□□□□ -0.32
CHMP4A-205ENST00000531158 PUS7Q96PZ0 661 aaKnown RBP13.05□□□□□ -0.32
CHMP4A-205ENST00000531158 SLC16A10Q8TF71 515 aa13.04□□□□□ -0.32
CHMP4A-205ENST00000531158 C4BP0C0L5 1744 aa13.04□□□□□ -0.32
CHMP4A-205ENST00000531158 SYTL4Q96C24 671 aaPredicted RBP13.03□□□□□ -0.32
CHMP4A-205ENST00000531158 RTL1A6NKG5 1358 aa13.03□□□□□ -0.32
CHMP4A-205ENST00000531158 ST20-MTHFSA0A0A6YYL1 179 aa13.02□□□□□ -0.33
CHMP4A-205ENST00000531158 NBPF6Q5VWK0 638 aa13.02□□□□□ -0.33
CHMP4A-205ENST00000531158 USHBP1Q8N6Y0 703 aa13.02□□□□□ -0.33
CHMP4A-205ENST00000531158 NBPF4Q96M43 638 aa13.02□□□□□ -0.33
CHMP4A-205ENST00000531158 TFCP2L1Q9NZI6 479 aa13.02□□□□□ -0.33
CHMP4A-205ENST00000531158 RRS1Q15050 365 aaKnown RBP13.01□□□□□ -0.33
CHMP4A-205ENST00000531158 COL23A1Q86Y22 540 aaPredicted RBP13.01□□□□□ -0.33
CHMP4A-205ENST00000531158 ZCRB1Q8TBF4 217 aaKnown RBP13.01□□□□□ -0.33
CHMP4A-205ENST00000531158 COG3Q96JB2 828 aa13.01□□□□□ -0.33
CHMP4A-205ENST00000531158 TONSLQ96HA7 1378 aa13.01□□□□□ -0.33
CHMP4A-205ENST00000531158 KIAA1551Q9HCM1 1747 aa13□□□□□ -0.33
CHMP4A-205ENST00000531158 CCNL1Q9UK58 526 aaPredicted RBP13□□□□□ -0.33
CHMP4A-205ENST00000531158 ADCY9O60503 1353 aa12.99□□□□□ -0.33
CHMP4A-205ENST00000531158 KIF3CO14782 793 aa12.99□□□□□ -0.33
CHMP4A-205ENST00000531158 FYB1O15117 783 aa12.99□□□□□ -0.33
CHMP4A-205ENST00000531158 AMPHP49418 695 aa12.99□□□□□ -0.33
CHMP4A-205ENST00000531158 AMIGO3Q86WK7 504 aa12.99□□□□□ -0.33
CHMP4A-205ENST00000531158 NCAPD2Q15021 1401 aa12.98□□□□□ -0.33
CHMP4A-205ENST00000531158 GGNBP2Q9H3C7 697 aa12.98□□□□□ -0.33
CHMP4A-205ENST00000531158 KIF13BQ9NQT8 1826 aa12.97□□□□□ -0.33
CHMP4A-205ENST00000531158 USP47Q96K76 1375 aa12.97□□□□□ -0.33
CHMP4A-205ENST00000531158 HSP90AB2PQ58FF8 381 aa12.97□□□□□ -0.33
CHMP4A-205ENST00000531158 MSL1Q68DK7 614 aa12.97□□□□□ -0.33
CHMP4A-205ENST00000531158 PCDH10Q9P2E7 1040 aa12.97□□□□□ -0.33
CHMP4A-205ENST00000531158 INSRP06213 1382 aa12.96□□□□□ -0.33
CHMP4A-205ENST00000531158 PALLDQ8WX93 1383 aa12.95□□□□□ -0.34
CHMP4A-205ENST00000531158 CYP27B1O15528 508 aa12.95□□□□□ -0.34
CHMP4A-205ENST00000531158 KLRG1Q96E93 195 aa12.95□□□□□ -0.34
CHMP4A-205ENST00000531158 WWC3Q9ULE0 1092 aa12.95□□□□□ -0.34
CHMP4A-205ENST00000531158 BRCA1P38398 1863 aaKnown RBP12.95□□□□□ -0.34
CHMP4A-205ENST00000531158 SMG6Q86US8 1419 aaKnown RBP12.95□□□□□ -0.34
CHMP4A-205ENST00000531158 CGNL1Q0VF96 1302 aa12.94□□□□□ -0.34
CHMP4A-205ENST00000531158 COL5A3P25940 1745 aaPredicted RBP12.94□□□□□ -0.34
CHMP4A-205ENST00000531158 SMIM5Q71RC9 77 aa12.94□□□□□ -0.34
CHMP4A-205ENST00000531158 JMYQ8N9B5 988 aa12.94□□□□□ -0.34
CHMP4A-205ENST00000531158 N4BP2Q86UW6 1770 aaPredicted RBP12.94□□□□□ -0.34
CHMP4A-205ENST00000531158 FLT4P35916 1363 aa12.94□□□□□ -0.34
CHMP4A-205ENST00000531158 PCDH11XQ9BZA7 1347 aa12.93□□□□□ -0.34
CHMP4A-205ENST00000531158 PCDH11YQ9BZA8 1340 aa12.93□□□□□ -0.34
CHMP4A-205ENST00000531158 TOMM70O94826 608 aa12.93□□□□□ -0.34
CHMP4A-205ENST00000531158 HTRA3P83110 453 aa12.93□□□□□ -0.34
CHMP4A-205ENST00000531158 CARD14Q9BXL6 1004 aa12.93□□□□□ -0.34
CHMP4A-205ENST00000531158 CICQ96RK0 1608 aaPredicted RBP12.92□□□□□ -0.34
CHMP4A-205ENST00000531158 MSH5O43196 834 aa12.92□□□□□ -0.34
CHMP4A-205ENST00000531158 C4AP0C0L4 1744 aa12.92□□□□□ -0.34
CHMP4A-205ENST00000531158 MPRIPQ6WCQ1 1025 aa12.92□□□□□ -0.34
CHMP4A-205ENST00000531158 RAPGEF4Q8WZA2 1011 aa12.92□□□□□ -0.34
CHMP4A-205ENST00000531158 EMILIN1Q9Y6C2 1016 aa12.92□□□□□ -0.34
CHMP4A-205ENST00000531158 ZNF831Q5JPB2 1677 aa12.92□□□□□ -0.34
CHMP4A-205ENST00000531158 KIF24Q5T7B8 1368 aa12.92□□□□□ -0.34
CHMP4A-205ENST00000531158 MYH14Q7Z406 1995 aaKnown RBP12.91□□□□□ -0.34
CHMP4A-205ENST00000531158 TATP17735 454 aaPredicted RBP12.91□□□□□ -0.34
CHMP4A-205ENST00000531158 NSD3Q9BZ95 1437 aa12.9□□□□□ -0.34
CHMP4A-205ENST00000531158 PIGBQ92521 554 aa12.89□□□□□ -0.35
CHMP4A-205ENST00000531158 CD2APQ9Y5K6 639 aa12.89□□□□□ -0.35
CHMP4A-205ENST00000531158 VIRMAQ69YN4 1812 aaKnown RBP12.88□□□□□ -0.35
CHMP4A-205ENST00000531158 TMF1P82094 1093 aa12.88□□□□□ -0.35
CHMP4A-205ENST00000531158 NKX1-1Q15270 411 aaPredicted RBP12.88□□□□□ -0.35
CHMP4A-205ENST00000531158 LINC00116Q8NCU8 138 aa12.88□□□□□ -0.35
CHMP4A-205ENST00000531158 WDR90Q96KV7 1748 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms