RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 NOD1Q9Y239 953 aa7.47□□□□□ -1.21
CD44-233ENST00000531141 ATP5J2-PTCD1G3V325 749 aa7.46□□□□□ -1.22
CD44-233ENST00000531141 SMCPP49901 116 aaPredicted RBP7.46□□□□□ -1.22
CD44-233ENST00000531141 CRIPAKQ8N1N5 446 aa7.46□□□□□ -1.22
CD44-233ENST00000531141 DEPDC4Q8N2C3 294 aa7.46□□□□□ -1.22
CD44-233ENST00000531141 MEIOBQ8N635 442 aa7.46□□□□□ -1.22
CD44-233ENST00000531141 ZNF775Q96BV0 537 aaPredicted RBP7.46□□□□□ -1.22
CD44-233ENST00000531141 CAPN5O15484 640 aaPredicted RBP7.45□□□□□ -1.22
CD44-233ENST00000531141 ADH1AP07327 375 aa7.45□□□□□ -1.22
CD44-233ENST00000531141 TSGA10IPQ3SY00 556 aa7.45□□□□□ -1.22
CD44-233ENST00000531141 Q6ZVU0 165 aa7.45□□□□□ -1.22
CD44-233ENST00000531141 PBXIP1Q96AQ6 731 aa7.45□□□□□ -1.22
CD44-233ENST00000531141 ARID3AQ99856 593 aa7.45□□□□□ -1.22
CD44-233ENST00000531141 ATP1A2P50993 1020 aa7.44□□□□□ -1.22
CD44-233ENST00000531141 OSBPL3Q9H4L5 887 aa7.44□□□□□ -1.22
CD44-233ENST00000531141 PPP1R15AO75807 674 aaPredicted RBP7.43□□□□□ -1.22
CD44-233ENST00000531141 RFX1P22670 979 aa7.43□□□□□ -1.22
CD44-233ENST00000531141 GTF2IP78347 998 aa7.43□□□□□ -1.22
CD44-233ENST00000531141 MKRN1Q9UHC7 482 aaKnown RBP7.43□□□□□ -1.22
CD44-233ENST00000531141 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.42□□□□□ -1.22
CD44-233ENST00000531141 FAM196BA6NMK8 535 aa7.42□□□□□ -1.22
CD44-233ENST00000531141 AXIN1O15169 862 aa7.42□□□□□ -1.22
CD44-233ENST00000531141 CBLBQ13191 982 aa7.42□□□□□ -1.22
CD44-233ENST00000531141 KANK4Q5T7N3 995 aaPredicted RBP7.42□□□□□ -1.22
CD44-233ENST00000531141 VRTNQ9H8Y1 702 aa7.42□□□□□ -1.22
CD44-233ENST00000531141 USP17L15C9J2P7 530 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 USP17L10C9JJH3 530 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 USP17L13C9JLJ4 530 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 USP17L12C9JPN9 530 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 USP17L11C9JVI0 530 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 USP17L21D6R901 530 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 USP17L18D6R9N7 530 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 USP17L22D6RA61 530 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 USP17L17D6RBQ6 530 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 USP17L19D6RCP7 530 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 USP17L20D6RJB6 530 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 UPP2O95045 317 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 ADD1P35611 737 aaKnown RBP7.41□□□□□ -1.22
CD44-233ENST00000531141 PSME1Q06323 249 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 USP17L24Q0WX57 530 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 LINC00528Q8N1L1 170 aa7.41□□□□□ -1.22
CD44-233ENST00000531141 TSEN34Q9BSV6 310 aaKnown RBP7.41□□□□□ -1.22
CD44-233ENST00000531141 WASLO00401 505 aaPredicted RBP7.4□□□□□ -1.22
CD44-233ENST00000531141 GNRH1P01148 92 aa7.4□□□□□ -1.22
CD44-233ENST00000531141 RASA1P20936 1047 aa7.4□□□□□ -1.22
CD44-233ENST00000531141 SRPK2P78362 688 aaKnown RBP7.4□□□□□ -1.22
CD44-233ENST00000531141 LARP1Q6PKG0 1096 aaKnown RBP7.4□□□□□ -1.22
CD44-233ENST00000531141 LARGE2Q8N3Y3 721 aa7.4□□□□□ -1.22
CD44-233ENST00000531141 OGFOD1Q8N543 542 aa7.4□□□□□ -1.22
CD44-233ENST00000531141 DNAAF2Q9NVR5 837 aaKnown RBP7.4□□□□□ -1.22
CD44-233ENST00000531141 PCDHGA11Q9Y5H2 935 aa7.4□□□□□ -1.22
CD44-233ENST00000531141 ATG7O95352 703 aa7.39□□□□□ -1.23
CD44-233ENST00000531141 CLDN10P78369 228 aa7.39□□□□□ -1.23
CD44-233ENST00000531141 ESCO1Q5FWF5 840 aa7.39□□□□□ -1.23
CD44-233ENST00000531141 MRPL14Q6P1L8 145 aaKnown RBP7.39□□□□□ -1.23
CD44-233ENST00000531141 SIX5Q8N196 739 aa7.39□□□□□ -1.23
CD44-233ENST00000531141 ARHGEF10LQ9HCE6 1279 aa7.39□□□□□ -1.23
CD44-233ENST00000531141 BMP1P13497 986 aa7.38□□□□□ -1.23
CD44-233ENST00000531141 PTGIRP43119 386 aa7.38□□□□□ -1.23
CD44-233ENST00000531141 RELBQ01201 579 aa7.38□□□□□ -1.23
CD44-233ENST00000531141 PTK7Q13308 1070 aa7.38□□□□□ -1.23
CD44-233ENST00000531141 CRTC2Q53ET0 693 aaPredicted RBP7.38□□□□□ -1.23
CD44-233ENST00000531141 TPCN2Q8NHX9 752 aa7.38□□□□□ -1.23
CD44-233ENST00000531141 ZNF594Q96JF6 807 aaPredicted RBP7.38□□□□□ -1.23
CD44-233ENST00000531141 AGBL1Q96MI9 1066 aa7.38□□□□□ -1.23
CD44-233ENST00000531141 AAASQ9NRG9 546 aa7.38□□□□□ -1.23
CD44-233ENST00000531141 KIAA1024Q9UPX6 916 aa7.38□□□□□ -1.23
CD44-233ENST00000531141 RBM19Q9Y4C8 960 aaKnown RBP7.38□□□□□ -1.23
CD44-233ENST00000531141 ST8SIA5O15466 376 aa7.37□□□□□ -1.23
CD44-233ENST00000531141 SCNN1DP51172 638 aa7.37□□□□□ -1.23
CD44-233ENST00000531141 CLN3Q13286 438 aa7.37□□□□□ -1.23
CD44-233ENST00000531141 SCARF1Q14162 830 aa7.37□□□□□ -1.23
CD44-233ENST00000531141 ELOAQ14241 798 aaKnown RBP7.37□□□□□ -1.23
CD44-233ENST00000531141 KDF1Q8NAX2 398 aaPredicted RBP7.37□□□□□ -1.23
CD44-233ENST00000531141 SPINT1O43278 529 aa7.36□□□□□ -1.23
CD44-233ENST00000531141 BMP2P12643 396 aa7.36□□□□□ -1.23
CD44-233ENST00000531141 GDF10P55107 478 aa7.36□□□□□ -1.23
CD44-233ENST00000531141 CCDC102BQ68D86 513 aa7.36□□□□□ -1.23
CD44-233ENST00000531141 TRIM46Q7Z4K8 759 aa7.36□□□□□ -1.23
CD44-233ENST00000531141 ETNK1Q9HBU6 452 aa7.36□□□□□ -1.23
CD44-233ENST00000531141 CDCA8Q53HL2 280 aa7.35□□□□□ -1.23
CD44-233ENST00000531141 ANKMY2Q8IV38 441 aa7.35□□□□□ -1.23
CD44-233ENST00000531141 ATP13A2Q9NQ11 1180 aa7.35□□□□□ -1.23
CD44-233ENST00000531141 RAB6BQ9NRW1 208 aa7.35□□□□□ -1.23
CD44-233ENST00000531141 NOVA2Q9UNW9 492 aaKnown RBP7.35□□□□□ -1.23
CD44-233ENST00000531141 A0A1W2PRU2 124 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 TMEM229AB2RXF0 380 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 M0R2N6 131 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 ZBTB7BO15156 539 aaPredicted RBP7.34□□□□□ -1.23
CD44-233ENST00000531141 DKK1O94907 266 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 IL2RAP01589 272 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 INHAP05111 366 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 GPC1P35052 558 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 SEC13P55735 322 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 DPYDQ12882 1025 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 C6orf118Q5T5N4 469 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 NLRP3Q96P20 1036 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 PURBQ96QR8 312 aaKnown RBP7.34□□□□□ -1.23
CD44-233ENST00000531141 ESYT1Q9BSJ8 1104 aa7.34□□□□□ -1.23
CD44-233ENST00000531141 ZNF358Q9NW07 568 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms