RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 KIF24Q5T7B8 1368 aa21.93■■□□□ 1.1
CPSF1-205ENST00000531042 DOT1LQ8TEK3 1739 aa21.92■■□□□ 1.1
CPSF1-205ENST00000531042 FLT4P35916 1363 aa21.92■■□□□ 1.1
CPSF1-205ENST00000531042 USHBP1Q8N6Y0 703 aa21.92■■□□□ 1.1
CPSF1-205ENST00000531042 LRRC4BQ9NT99 713 aa21.92■■□□□ 1.1
CPSF1-205ENST00000531042 CGNL1Q0VF96 1302 aa21.91■■□□□ 1.1
CPSF1-205ENST00000531042 PTGER2P43116 358 aa21.9■■□□□ 1.1
CPSF1-205ENST00000531042 PRIM1P49642 420 aaKnown RBP21.9■■□□□ 1.1
CPSF1-205ENST00000531042 SYTL4Q96C24 671 aaPredicted RBP21.9■■□□□ 1.1
CPSF1-205ENST00000531042 ATF5Q9Y2D1 282 aaPredicted RBP21.9■■□□□ 1.1
CPSF1-205ENST00000531042 RAPGEF4Q8WZA2 1011 aa21.89■■□□□ 1.09
CPSF1-205ENST00000531042 SLC27A3Q5K4L6 730 aa21.88■■□□□ 1.09
CPSF1-205ENST00000531042 EMILIN1Q9Y6C2 1016 aa21.88■■□□□ 1.09
CPSF1-205ENST00000531042 NSD2O96028 1365 aa21.87■■□□□ 1.09
CPSF1-205ENST00000531042 TATP17735 454 aaPredicted RBP21.87■■□□□ 1.09
CPSF1-205ENST00000531042 ZNF827Q17R98 1081 aa21.87■■□□□ 1.09
CPSF1-205ENST00000531042 MTFR1LQ9H019 292 aa21.87■■□□□ 1.09
CPSF1-205ENST00000531042 LY75O60449 1722 aa21.86■■□□□ 1.09
CPSF1-205ENST00000531042 ANKRD26Q9UPS8 1709 aa21.86■■□□□ 1.09
CPSF1-205ENST00000531042 AKT1S1Q96B36 256 aa21.85■■□□□ 1.09
CPSF1-205ENST00000531042 MAP2P11137 1827 aaKnown RBP21.85■■□□□ 1.09
CPSF1-205ENST00000531042 EIF4G2P78344 907 aaKnown RBP eCLIP21.84■■□□□ 1.09
CPSF1-205ENST00000531042 CCER1Q8TC90 406 aaPredicted RBP21.84■■□□□ 1.09
CPSF1-205ENST00000531042 SGIP1Q9BQI5 828 aa21.84■■□□□ 1.09
CPSF1-205ENST00000531042 POLR3GLQ9BT43 218 aa21.84■■□□□ 1.09
CPSF1-205ENST00000531042 QSER1Q2KHR3 1735 aa21.83■■□□□ 1.09
CPSF1-205ENST00000531042 HSPA5P11021 654 aaKnown RBP21.83■■□□□ 1.09
CPSF1-205ENST00000531042 PPM1GO15355 546 aaPredicted RBP21.82■■□□□ 1.08
CPSF1-205ENST00000531042 KCNQ4P56696 695 aa21.82■■□□□ 1.08
CPSF1-205ENST00000531042 WASHC2AQ641Q2 1341 aa21.81■■□□□ 1.08
CPSF1-205ENST00000531042 PCDH11XQ9BZA7 1347 aa21.81■■□□□ 1.08
CPSF1-205ENST00000531042 PCDH11YQ9BZA8 1340 aa21.81■■□□□ 1.08
CPSF1-205ENST00000531042 DCAF8L1A6NGE4 600 aa21.81■■□□□ 1.08
CPSF1-205ENST00000531042 NCAPD2Q15021 1401 aa21.8■■□□□ 1.08
CPSF1-205ENST00000531042 POLKQ9UBT6 870 aa21.79■■□□□ 1.08
CPSF1-205ENST00000531042 PKD1L3Q7Z443 1732 aa21.79■■□□□ 1.08
CPSF1-205ENST00000531042 TUBGCP6Q96RT7 1819 aa21.78■■□□□ 1.08
CPSF1-205ENST00000531042 CYP27B1O15528 508 aa21.78■■□□□ 1.08
CPSF1-205ENST00000531042 FHDC1Q9C0D6 1143 aaPredicted RBP21.78■■□□□ 1.08
CPSF1-205ENST00000531042 SLC16A10Q8TF71 515 aa21.77■■□□□ 1.08
CPSF1-205ENST00000531042 SYT17Q9BSW7 474 aa21.77■■□□□ 1.08
CPSF1-205ENST00000531042 CCNL1Q9UK58 526 aaPredicted RBP21.77■■□□□ 1.08
CPSF1-205ENST00000531042 PNPLA7Q6ZV29 1317 aa21.77■■□□□ 1.07
CPSF1-205ENST00000531042 ARXQ96QS3 562 aa21.76■■□□□ 1.07
CPSF1-205ENST00000531042 EYA1Q99502 592 aa21.76■■□□□ 1.07
CPSF1-205ENST00000531042 TFCP2L1Q9NZI6 479 aa21.76■■□□□ 1.07
CPSF1-205ENST00000531042 YY1P25490 414 aa21.75■■□□□ 1.07
CPSF1-205ENST00000531042 PANK3Q9H999 370 aa21.75■■□□□ 1.07
CPSF1-205ENST00000531042 COL24A1Q17RW2 1714 aa21.75■■□□□ 1.07
CPSF1-205ENST00000531042 TOGARAM1Q9Y4F4 1720 aa21.75■■□□□ 1.07
CPSF1-205ENST00000531042 ITGB4P16144 1822 aa21.74■■□□□ 1.07
CPSF1-205ENST00000531042 TNNT2P45379 298 aaPredicted RBP21.74■■□□□ 1.07
CPSF1-205ENST00000531042 MPRIPQ6WCQ1 1025 aa21.73■■□□□ 1.07
CPSF1-205ENST00000531042 SPG7Q9UQ90 795 aa21.73■■□□□ 1.07
CPSF1-205ENST00000531042 NKX1-1Q15270 411 aaPredicted RBP21.72■■□□□ 1.07
CPSF1-205ENST00000531042 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.71■■□□□ 1.072e-6■■□□□ 11.9
CPSF1-205ENST00000531042 C5P01031 1676 aa21.71■■□□□ 1.07
CPSF1-205ENST00000531042 MAP3K5Q99683 1374 aa21.71■■□□□ 1.07
CPSF1-205ENST00000531042 EIF4A2Q14240 407 aaKnown RBP21.7■■□□□ 1.06
CPSF1-205ENST00000531042 PALLDQ8WX93 1383 aa21.7■■□□□ 1.06
CPSF1-205ENST00000531042 TAF1LQ8IZX4 1826 aa21.69■■□□□ 1.06
CPSF1-205ENST00000531042 POLD1P28340 1107 aa21.68■■□□□ 1.06
CPSF1-205ENST00000531042 HMGB2P26583 209 aaKnown RBP21.67■■□□□ 1.06
CPSF1-205ENST00000531042 COL23A1Q86Y22 540 aaPredicted RBP21.67■■□□□ 1.06
CPSF1-205ENST00000531042 PIGBQ92521 554 aa21.67■■□□□ 1.06
CPSF1-205ENST00000531042 SMARCC1Q92922 1105 aaPredicted RBP21.67■■□□□ 1.06
CPSF1-205ENST00000531042 IGSF1Q8N6C5 1336 aa21.65■■□□□ 1.06
CPSF1-205ENST00000531042 MSH5O43196 834 aa21.65■■□□□ 1.06
CPSF1-205ENST00000531042 PHKG2P15735 406 aa21.65■■□□□ 1.06
CPSF1-205ENST00000531042 IFNL2Q8IZJ0 200 aa21.65■■□□□ 1.06
CPSF1-205ENST00000531042 PLEKHG2Q9H7P9 1386 aa21.64■■□□□ 1.06
CPSF1-205ENST00000531042 UTRNP46939 3433 aa21.64■■□□□ 1.05
CPSF1-205ENST00000531042 MORC1Q86VD1 984 aa21.63■■□□□ 1.05
CPSF1-205ENST00000531042 C4BP0C0L5 1744 aa21.63■■□□□ 1.05
CPSF1-205ENST00000531042 KLHL34Q8N239 644 aa21.62■■□□□ 1.05
CPSF1-205ENST00000531042 TMOD3Q9NYL9 352 aa21.62■■□□□ 1.05
CPSF1-205ENST00000531042 FLAD1Q8NFF5 587 aa21.61■■□□□ 1.05
CPSF1-205ENST00000531042 KNSTRNQ9Y448 316 aa21.61■■□□□ 1.05
CPSF1-205ENST00000531042 KIF7Q2M1P5 1343 aa21.58■■□□□ 1.05
CPSF1-205ENST00000531042 LOC102724428A0A0B4J2F2 783 aa21.58■■□□□ 1.05
CPSF1-205ENST00000531042 SIK1P57059 783 aa21.58■■□□□ 1.05
CPSF1-205ENST00000531042 MSL1Q68DK7 614 aa21.58■■□□□ 1.05
CPSF1-205ENST00000531042 AK7Q96M32 723 aa21.58■■□□□ 1.05
CPSF1-205ENST00000531042 ASAP1Q9ULH1 1129 aa21.58■■□□□ 1.05
CPSF1-205ENST00000531042 CHD4Q14839 1912 aa21.58■■□□□ 1.04
CPSF1-205ENST00000531042 UBR3Q6ZT12 1888 aa21.58■■□□□ 1.04
CPSF1-205ENST00000531042 GPR162Q16538 588 aa21.56■■□□□ 1.04
CPSF1-205ENST00000531042 PLEKHO1Q53GL0 409 aaPredicted RBP21.56■■□□□ 1.04
CPSF1-205ENST00000531042 AMER1Q5JTC6 1135 aaPredicted RBP21.56■■□□□ 1.04
CPSF1-205ENST00000531042 AMIGO3Q86WK7 504 aa21.56■■□□□ 1.04
CPSF1-205ENST00000531042 NLGN2Q8NFZ4 835 aa21.56■■□□□ 1.04
CPSF1-205ENST00000531042 LINC00116Q8NCU8 138 aa21.55■■□□□ 1.04
CPSF1-205ENST00000531042 ATG3Q9NT62 314 aa21.55■■□□□ 1.04
CPSF1-205ENST00000531042 ERVV-2B6SEH9 535 aa21.54■■□□□ 1.04
CPSF1-205ENST00000531042 HSP90AB1P08238 724 aaKnown RBP21.54■■□□□ 1.04
CPSF1-205ENST00000531042 AMOTQ4VCS5 1084 aa21.54■■□□□ 1.04
CPSF1-205ENST00000531042 AEBP1Q8IUX7 1158 aa21.54■■□□□ 1.04
CPSF1-205ENST00000531042 DCAF5Q96JK2 942 aa21.54■■□□□ 1.04
CPSF1-205ENST00000531042 ATP6V1AP38606 617 aa21.53■■□□□ 1.04
CPSF1-205ENST00000531042 ITPK1Q13572 414 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms