RNA–Protein interactions for RNA: ENST00000530404.5

TSPAN4-219, Transcript of tetraspanin 4, humanhuman

TSL 5

Gene TSPAN4, Length 818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-219ENST00000530404 MTFR1LQ9H019 292 aa29.04■■■□□ 2.24
TSPAN4-219ENST00000530404 RTL1A6NKG5 1358 aa29.03■■■□□ 2.24
TSPAN4-219ENST00000530404 CHD4Q14839 1912 aa29.02■■■□□ 2.24
TSPAN4-219ENST00000530404 MAP2P11137 1827 aaKnown RBP29.01■■■□□ 2.24
TSPAN4-219ENST00000530404 KCNQ4P56696 695 aa29.01■■■□□ 2.23
TSPAN4-219ENST00000530404 NBPF6Q5VWK0 638 aa29.01■■■□□ 2.23
TSPAN4-219ENST00000530404 NBPF4Q96M43 638 aa29.01■■■□□ 2.23
TSPAN4-219ENST00000530404 SGIP1Q9BQI5 828 aa29.01■■■□□ 2.23
TSPAN4-219ENST00000530404 FHDC1Q9C0D6 1143 aaPredicted RBP29.01■■■□□ 2.23
TSPAN4-219ENST00000530404 PRIM1P49642 420 aaKnown RBP29■■■□□ 2.23
TSPAN4-219ENST00000530404 ZCRB1Q8TBF4 217 aaKnown RBP29■■■□□ 2.23
TSPAN4-219ENST00000530404 NSD2O96028 1365 aa28.99■■■□□ 2.23
TSPAN4-219ENST00000530404 COL24A1Q17RW2 1714 aa28.98■■■□□ 2.23
TSPAN4-219ENST00000530404 ITGB4P16144 1822 aa28.98■■■□□ 2.23
TSPAN4-219ENST00000530404 SYT17Q9BSW7 474 aa28.97■■■□□ 2.23
TSPAN4-219ENST00000530404 SMG6Q86US8 1419 aaKnown RBP28.96■■■□□ 2.23
TSPAN4-219ENST00000530404 AKT1S1Q96B36 256 aa28.96■■■□□ 2.23
TSPAN4-219ENST00000530404 HSP90AB2PQ58FF8 381 aa28.95■■■□□ 2.22
TSPAN4-219ENST00000530404 TAF1LQ8IZX4 1826 aa28.94■■■□□ 2.22
TSPAN4-219ENST00000530404 SLC27A3Q5K4L6 730 aa28.94■■■□□ 2.22
TSPAN4-219ENST00000530404 ARXQ96QS3 562 aa28.93■■■□□ 2.22
TSPAN4-219ENST00000530404 ANKRD26Q9UPS8 1709 aa28.93■■■□□ 2.22
TSPAN4-219ENST00000530404 TOGARAM1Q9Y4F4 1720 aa28.93■■■□□ 2.22
TSPAN4-219ENST00000530404 NSD3Q9BZ95 1437 aa28.93■■■□□ 2.22
TSPAN4-219ENST00000530404 CDCA8Q53HL2 280 aa28.92■■■□□ 2.22
TSPAN4-219ENST00000530404 CARD14Q9BXL6 1004 aa28.92■■■□□ 2.22
TSPAN4-219ENST00000530404 C5P01031 1676 aa28.92■■■□□ 2.22
TSPAN4-219ENST00000530404 RAPGEF4Q8WZA2 1011 aa28.91■■■□□ 2.22
TSPAN4-219ENST00000530404 PKD1L3Q7Z443 1732 aa28.91■■■□□ 2.22
TSPAN4-219ENST00000530404 PNPLA7Q6ZV29 1317 aa28.91■■■□□ 2.22
TSPAN4-219ENST00000530404 INSRP06213 1382 aa28.9■■■□□ 2.22
TSPAN4-219ENST00000530404 FLT4P35916 1363 aa28.9■■■□□ 2.22
TSPAN4-219ENST00000530404 TATP17735 454 aaPredicted RBP28.88■■■□□ 2.21
TSPAN4-219ENST00000530404 TFCP2L1Q9NZI6 479 aa28.88■■■□□ 2.21
TSPAN4-219ENST00000530404 EMILIN1Q9Y6C2 1016 aa28.88■■■□□ 2.21
TSPAN4-219ENST00000530404 GOLGB1Q14789 3259 aaKnown RBP28.88■■■□□ 2.21
TSPAN4-219ENST00000530404 CCNL1Q9UK58 526 aaPredicted RBP28.86■■■□□ 2.21
TSPAN4-219ENST00000530404 CGNL1Q0VF96 1302 aa28.86■■■□□ 2.21
TSPAN4-219ENST00000530404 KLHL34Q8N239 644 aa28.85■■■□□ 2.21
TSPAN4-219ENST00000530404 PCGF6Q9BYE7 350 aa28.83■■■□□ 2.21
TSPAN4-219ENST00000530404 KIF24Q5T7B8 1368 aa28.83■■■□□ 2.21
TSPAN4-219ENST00000530404 PPM1GO15355 546 aaPredicted RBP28.82■■■□□ 2.2
TSPAN4-219ENST00000530404 SLC16A10Q8TF71 515 aa28.82■■■□□ 2.2
TSPAN4-219ENST00000530404 PCDH11XQ9BZA7 1347 aa28.82■■■□□ 2.2
TSPAN4-219ENST00000530404 PCDH11YQ9BZA8 1340 aa28.82■■■□□ 2.2
TSPAN4-219ENST00000530404 MAP3K5Q99683 1374 aa28.81■■■□□ 2.2
TSPAN4-219ENST00000530404 POLR3GLQ9BT43 218 aa28.81■■■□□ 2.2
TSPAN4-219ENST00000530404 POLD1P28340 1107 aa28.79■■■□□ 2.2
TSPAN4-219ENST00000530404 CYP27B1O15528 508 aa28.78■■■□□ 2.2
TSPAN4-219ENST00000530404 MSH5O43196 834 aa28.77■■■□□ 2.2
TSPAN4-219ENST00000530404 MPRIPQ6WCQ1 1025 aa28.77■■■□□ 2.2
TSPAN4-219ENST00000530404 TIMELESSQ9UNS1 1208 aa28.76■■■□□ 2.19
TSPAN4-219ENST00000530404 C4BP0C0L5 1744 aa28.76■■■□□ 2.19
TSPAN4-219ENST00000530404 UBR3Q6ZT12 1888 aa28.76■■■□□ 2.19
TSPAN4-219ENST00000530404 COL23A1Q86Y22 540 aaPredicted RBP28.75■■■□□ 2.19
TSPAN4-219ENST00000530404 NCAPD2Q15021 1401 aa28.75■■■□□ 2.19
TSPAN4-219ENST00000530404 PALLDQ8WX93 1383 aa28.75■■■□□ 2.19
TSPAN4-219ENST00000530404 ZNF784Q8NCA9 323 aaPredicted RBP28.73■■■□□ 2.19
TSPAN4-219ENST00000530404 GPR162Q16538 588 aa28.72■■■□□ 2.19
TSPAN4-219ENST00000530404 NLGN2Q8NFZ4 835 aa28.72■■■□□ 2.19
TSPAN4-219ENST00000530404 MSL1Q68DK7 614 aa28.71■■■□□ 2.19
TSPAN4-219ENST00000530404 PELP1Q8IZL8 1130 aaKnown RBP28.71■■■□□ 2.19
TSPAN4-219ENST00000530404 WASHC2AQ641Q2 1341 aa28.7■■■□□ 2.19
TSPAN4-219ENST00000530404 TNNT2P45379 298 aaPredicted RBP28.7■■■□□ 2.18
TSPAN4-219ENST00000530404 EYA1Q99502 592 aa28.7■■■□□ 2.18
TSPAN4-219ENST00000530404 CLSPNQ9HAW4 1339 aa28.69■■■□□ 2.18
TSPAN4-219ENST00000530404 POLKQ9UBT6 870 aa28.68■■■□□ 2.18
TSPAN4-219ENST00000530404 SPG7Q9UQ90 795 aa28.66■■■□□ 2.18
TSPAN4-219ENST00000530404 PIGBQ92521 554 aa28.65■■■□□ 2.18
TSPAN4-219ENST00000530404 SMIM5Q71RC9 77 aa28.64■■■□□ 2.18
TSPAN4-219ENST00000530404 HSPA5P11021 654 aaKnown RBP28.63■■■□□ 2.17
TSPAN4-219ENST00000530404 NKX1-1Q15270 411 aaPredicted RBP28.63■■■□□ 2.17
TSPAN4-219ENST00000530404 AMIGO3Q86WK7 504 aa28.63■■■□□ 2.17
TSPAN4-219ENST00000530404 EIF4A2Q14240 407 aaKnown RBP28.62■■■□□ 2.17
TSPAN4-219ENST00000530404 SMARCC1Q92922 1105 aaPredicted RBP28.62■■■□□ 2.17
TSPAN4-219ENST00000530404 AK7Q96M32 723 aa28.6■■■□□ 2.17
TSPAN4-219ENST00000530404 PHF14O94880 888 aa28.59■■■□□ 2.17
TSPAN4-219ENST00000530404 EIF4G2P78344 907 aaKnown RBP eCLIP28.59■■■□□ 2.17
TSPAN4-219ENST00000530404 PANK3Q9H999 370 aa28.59■■■□□ 2.17
TSPAN4-219ENST00000530404 PHKG2P15735 406 aa28.58■■■□□ 2.17
TSPAN4-219ENST00000530404 TMOD3Q9NYL9 352 aa28.57■■■□□ 2.16
TSPAN4-219ENST00000530404 YBX3P16989 372 aaKnown RBP eCLIP28.56■■■□□ 2.16
TSPAN4-219ENST00000530404 IFNL2Q8IZJ0 200 aa28.56■■■□□ 2.16
TSPAN4-219ENST00000530404 LINC00116Q8NCU8 138 aa28.56■■■□□ 2.16
TSPAN4-219ENST00000530404 FLAD1Q8NFF5 587 aa28.56■■■□□ 2.16
TSPAN4-219ENST00000530404 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.56■■■□□ 2.16
TSPAN4-219ENST00000530404 ASAP1Q9ULH1 1129 aa28.56■■■□□ 2.16
TSPAN4-219ENST00000530404 LOC102724428A0A0B4J2F2 783 aa28.55■■■□□ 2.16
TSPAN4-219ENST00000530404 SIK1P57059 783 aa28.55■■■□□ 2.16
TSPAN4-219ENST00000530404 VIRMAQ69YN4 1812 aaKnown RBP28.55■■■□□ 2.16
TSPAN4-219ENST00000530404 COL5A3P25940 1745 aaPredicted RBP28.52■■■□□ 2.16
TSPAN4-219ENST00000530404 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.52■■■□□ 2.16
TSPAN4-219ENST00000530404 IGSF1Q8N6C5 1336 aa28.51■■■□□ 2.15
TSPAN4-219ENST00000530404 HMGB2P26583 209 aaKnown RBP28.51■■■□□ 2.15
TSPAN4-219ENST00000530404 ITPK1Q13572 414 aa28.51■■■□□ 2.15
TSPAN4-219ENST00000530404 CCER1Q8TC90 406 aaPredicted RBP28.5■■■□□ 2.15
TSPAN4-219ENST00000530404 ATP6V1AP38606 617 aa28.49■■■□□ 2.15
TSPAN4-219ENST00000530404 ATG3Q9NT62 314 aa28.49■■■□□ 2.15
TSPAN4-219ENST00000530404 MYH14Q7Z406 1995 aaKnown RBP28.48■■■□□ 2.15
TSPAN4-219ENST00000530404 CD2APQ9Y5K6 639 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms