RNA–Protein interactions for RNA: ENST00000530395.1

SMPD1-204, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 5

Gene SMPD1, Length 447 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-204ENST00000530395 NBPF4Q96M43 638 aa28.98■■■□□ 2.23
SMPD1-204ENST00000530395 RAPGEF4Q8WZA2 1011 aa28.97■■■□□ 2.23
SMPD1-204ENST00000530395 PDGFDQ9GZP0 370 aaPredicted RBP28.97■■■□□ 2.23
SMPD1-204ENST00000530395 ZBTB7AO95365 584 aa28.96■■■□□ 2.23
SMPD1-204ENST00000530395 HSP90AB2PQ58FF8 381 aa28.95■■■□□ 2.22
SMPD1-204ENST00000530395 USHBP1Q8N6Y0 703 aa28.95■■■□□ 2.22
SMPD1-204ENST00000530395 SYTL4Q96C24 671 aaPredicted RBP28.95■■■□□ 2.22
SMPD1-204ENST00000530395 ANKRD26Q9UPS8 1709 aa28.94■■■□□ 2.22
SMPD1-204ENST00000530395 CCER1Q8TC90 406 aaPredicted RBP28.93■■■□□ 2.22
SMPD1-204ENST00000530395 POLR3GLQ9BT43 218 aa28.93■■■□□ 2.22
SMPD1-204ENST00000530395 TATP17735 454 aaPredicted RBP28.92■■■□□ 2.22
SMPD1-204ENST00000530395 SLC27A3Q5K4L6 730 aa28.92■■■□□ 2.22
SMPD1-204ENST00000530395 PRIM1P49642 420 aaKnown RBP28.91■■■□□ 2.22
SMPD1-204ENST00000530395 LY75O60449 1722 aa28.91■■■□□ 2.22
SMPD1-204ENST00000530395 MAP2P11137 1827 aaKnown RBP28.9■■■□□ 2.22
SMPD1-204ENST00000530395 DCAF8L1A6NGE4 600 aa28.9■■■□□ 2.22
SMPD1-204ENST00000530395 EIF4G2P78344 907 aaKnown RBP eCLIP28.9■■■□□ 2.22
SMPD1-204ENST00000530395 MTFR1LQ9H019 292 aa28.9■■■□□ 2.22
SMPD1-204ENST00000530395 ATF5Q9Y2D1 282 aaPredicted RBP28.9■■■□□ 2.22
SMPD1-204ENST00000530395 QSER1Q2KHR3 1735 aa28.89■■■□□ 2.22
SMPD1-204ENST00000530395 LRRC4BQ9NT99 713 aa28.89■■■□□ 2.22
SMPD1-204ENST00000530395 EMILIN1Q9Y6C2 1016 aa28.89■■■□□ 2.22
SMPD1-204ENST00000530395 PTGER2P43116 358 aa28.87■■■□□ 2.21
SMPD1-204ENST00000530395 PCDH11XQ9BZA7 1347 aa28.87■■■□□ 2.21
SMPD1-204ENST00000530395 PCDH11YQ9BZA8 1340 aa28.87■■■□□ 2.21
SMPD1-204ENST00000530395 NSD2O96028 1365 aa28.87■■■□□ 2.21
SMPD1-204ENST00000530395 PPM1GO15355 546 aaPredicted RBP28.86■■■□□ 2.21
SMPD1-204ENST00000530395 ZNF827Q17R98 1081 aa28.86■■■□□ 2.21
SMPD1-204ENST00000530395 PKD1L3Q7Z443 1732 aa28.84■■■□□ 2.21
SMPD1-204ENST00000530395 HSPA5P11021 654 aaKnown RBP28.84■■■□□ 2.21
SMPD1-204ENST00000530395 AKT1S1Q96B36 256 aa28.82■■■□□ 2.2
SMPD1-204ENST00000530395 TUBGCP6Q96RT7 1819 aa28.81■■■□□ 2.2
SMPD1-204ENST00000530395 WASHC2AQ641Q2 1341 aa28.81■■■□□ 2.2
SMPD1-204ENST00000530395 NCAPD2Q15021 1401 aa28.8■■■□□ 2.2
SMPD1-204ENST00000530395 SGIP1Q9BQI5 828 aa28.78■■■□□ 2.2
SMPD1-204ENST00000530395 CCNL1Q9UK58 526 aaPredicted RBP28.78■■■□□ 2.2
SMPD1-204ENST00000530395 TFCP2L1Q9NZI6 479 aa28.77■■■□□ 2.2
SMPD1-204ENST00000530395 ITGB4P16144 1822 aa28.76■■■□□ 2.19
SMPD1-204ENST00000530395 KCNQ4P56696 695 aa28.76■■■□□ 2.19
SMPD1-204ENST00000530395 SLC16A10Q8TF71 515 aa28.76■■■□□ 2.19
SMPD1-204ENST00000530395 POLKQ9UBT6 870 aa28.76■■■□□ 2.19
SMPD1-204ENST00000530395 TOGARAM1Q9Y4F4 1720 aa28.76■■■□□ 2.19
SMPD1-204ENST00000530395 ARXQ96QS3 562 aa28.75■■■□□ 2.19
SMPD1-204ENST00000530395 FHDC1Q9C0D6 1143 aaPredicted RBP28.75■■■□□ 2.19
SMPD1-204ENST00000530395 PNPLA7Q6ZV29 1317 aa28.74■■■□□ 2.19
SMPD1-204ENST00000530395 C5P01031 1676 aa28.74■■■□□ 2.19
SMPD1-204ENST00000530395 CYP27B1O15528 508 aa28.74■■■□□ 2.19
SMPD1-204ENST00000530395 SPG7Q9UQ90 795 aa28.74■■■□□ 2.19
SMPD1-204ENST00000530395 YY1P25490 414 aa28.73■■■□□ 2.19
SMPD1-204ENST00000530395 TNNT2P45379 298 aaPredicted RBP28.73■■■□□ 2.19
SMPD1-204ENST00000530395 PANK3Q9H999 370 aa28.73■■■□□ 2.19
SMPD1-204ENST00000530395 COL24A1Q17RW2 1714 aa28.72■■■□□ 2.19
SMPD1-204ENST00000530395 HMGB2P26583 209 aaKnown RBP28.72■■■□□ 2.19
SMPD1-204ENST00000530395 EYA1Q99502 592 aa28.72■■■□□ 2.19
SMPD1-204ENST00000530395 SYT17Q9BSW7 474 aa28.72■■■□□ 2.19
SMPD1-204ENST00000530395 MPRIPQ6WCQ1 1025 aa28.71■■■□□ 2.19
SMPD1-204ENST00000530395 POLD1P28340 1107 aa28.7■■■□□ 2.18
SMPD1-204ENST00000530395 TAF1LQ8IZX4 1826 aa28.69■■■□□ 2.18
SMPD1-204ENST00000530395 PALLDQ8WX93 1383 aa28.69■■■□□ 2.18
SMPD1-204ENST00000530395 MAP3K5Q99683 1374 aa28.68■■■□□ 2.18
SMPD1-204ENST00000530395 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.68■■■□□ 2.18
SMPD1-204ENST00000530395 UTRNP46939 3433 aa28.68■■■□□ 2.18
SMPD1-204ENST00000530395 EIF4A2Q14240 407 aaKnown RBP28.67■■■□□ 2.18
SMPD1-204ENST00000530395 PLEKHG2Q9H7P9 1386 aa28.66■■■□□ 2.18
SMPD1-204ENST00000530395 NKX1-1Q15270 411 aaPredicted RBP28.66■■■□□ 2.18
SMPD1-204ENST00000530395 SMARCC1Q92922 1105 aaPredicted RBP28.66■■■□□ 2.18
SMPD1-204ENST00000530395 MSH5O43196 834 aa28.63■■■□□ 2.17
SMPD1-204ENST00000530395 MORC1Q86VD1 984 aa28.62■■■□□ 2.17
SMPD1-204ENST00000530395 IFNL2Q8IZJ0 200 aa28.62■■■□□ 2.17
SMPD1-204ENST00000530395 KNSTRNQ9Y448 316 aa28.61■■■□□ 2.17
SMPD1-204ENST00000530395 C4BP0C0L5 1744 aa28.6■■■□□ 2.17
SMPD1-204ENST00000530395 KLHL34Q8N239 644 aa28.6■■■□□ 2.17
SMPD1-204ENST00000530395 PIGBQ92521 554 aa28.6■■■□□ 2.17
SMPD1-204ENST00000530395 IGSF1Q8N6C5 1336 aa28.6■■■□□ 2.17
SMPD1-204ENST00000530395 PHKG2P15735 406 aa28.59■■■□□ 2.17
SMPD1-204ENST00000530395 COL23A1Q86Y22 540 aaPredicted RBP28.59■■■□□ 2.17
SMPD1-204ENST00000530395 TMOD3Q9NYL9 352 aa28.59■■■□□ 2.17
SMPD1-204ENST00000530395 FLAD1Q8NFF5 587 aa28.58■■■□□ 2.17
SMPD1-204ENST00000530395 CHD4Q14839 1912 aa28.57■■■□□ 2.16
SMPD1-204ENST00000530395 AK7Q96M32 723 aa28.55■■■□□ 2.16
SMPD1-204ENST00000530395 UBR3Q6ZT12 1888 aa28.54■■■□□ 2.16
SMPD1-204ENST00000530395 KIF7Q2M1P5 1343 aa28.52■■■□□ 2.16
SMPD1-204ENST00000530395 GOLGB1Q14789 3259 aaKnown RBP28.52■■■□□ 2.16
SMPD1-204ENST00000530395 PLEKHO1Q53GL0 409 aaPredicted RBP28.52■■■□□ 2.16
SMPD1-204ENST00000530395 LOC102724428A0A0B4J2F2 783 aa28.51■■■□□ 2.15
SMPD1-204ENST00000530395 HSP90AB1P08238 724 aaKnown RBP28.51■■■□□ 2.15
SMPD1-204ENST00000530395 SIK1P57059 783 aa28.51■■■□□ 2.15
SMPD1-204ENST00000530395 GPR162Q16538 588 aa28.5■■■□□ 2.15
SMPD1-204ENST00000530395 MSL1Q68DK7 614 aa28.5■■■□□ 2.15
SMPD1-204ENST00000530395 AMOTQ4VCS5 1084 aa28.49■■■□□ 2.15
SMPD1-204ENST00000530395 ASAP1Q9ULH1 1129 aa28.49■■■□□ 2.15
SMPD1-204ENST00000530395 ERVV-2B6SEH9 535 aa28.47■■■□□ 2.15
SMPD1-204ENST00000530395 AMER1Q5JTC6 1135 aaPredicted RBP28.47■■■□□ 2.15
SMPD1-204ENST00000530395 ZNF530Q6P9A1 599 aaPredicted RBP28.47■■■□□ 2.15
SMPD1-204ENST00000530395 DCAF5Q96JK2 942 aa28.47■■■□□ 2.15
SMPD1-204ENST00000530395 PHF14O94880 888 aa28.45■■■□□ 2.14
SMPD1-204ENST00000530395 ATP6V1AP38606 617 aa28.45■■■□□ 2.14
SMPD1-204ENST00000530395 LINC00116Q8NCU8 138 aa28.45■■■□□ 2.14
SMPD1-204ENST00000530395 ATG3Q9NT62 314 aa28.45■■■□□ 2.14
SMPD1-204ENST00000530395 SSFA2P28290 1259 aa28.44■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms