RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 H3BM21 787 aa5.89□□□□□ -1.47
CD44-229ENST00000528672 CAPN5O15484 640 aaPredicted RBP5.89□□□□□ -1.47
CD44-229ENST00000528672 NR3C2P08235 984 aa5.89□□□□□ -1.47
CD44-229ENST00000528672 EIF4G2P78344 907 aaKnown RBP eCLIP5.89□□□□□ -1.47
CD44-229ENST00000528672 ARID5BQ14865 1188 aa5.89□□□□□ -1.47
CD44-229ENST00000528672 TRIM46Q7Z4K8 759 aa5.89□□□□□ -1.47
CD44-229ENST00000528672 CCDC97Q96F63 343 aaPredicted RBP5.89□□□□□ -1.47
CD44-229ENST00000528672 CEP126Q9P2H0 1117 aa5.89□□□□□ -1.47
CD44-229ENST00000528672 VEGFBP49765 207 aa5.88□□□□□ -1.47
CD44-229ENST00000528672 SEMA3FQ13275 785 aa5.88□□□□□ -1.47
CD44-229ENST00000528672 INTS6LQ5JSJ4 861 aaKnown RBP5.88□□□□□ -1.47
CD44-229ENST00000528672 PHTF2Q8N3S3 785 aa5.88□□□□□ -1.47
CD44-229ENST00000528672 MAFBQ9Y5Q3 323 aaPredicted RBP5.88□□□□□ -1.47
CD44-229ENST00000528672 SKIP12755 728 aa5.87□□□□□ -1.47
CD44-229ENST00000528672 BMP1P13497 986 aa5.87□□□□□ -1.47
CD44-229ENST00000528672 SCNN1AP37088 669 aa5.87□□□□□ -1.47
CD44-229ENST00000528672 WDR4P57081 412 aaKnown RBP5.87□□□□□ -1.47
CD44-229ENST00000528672 RETREG2Q8NC44 543 aa5.87□□□□□ -1.47
CD44-229ENST00000528672 TMPRSS4Q9NRS4 437 aa5.87□□□□□ -1.47
CD44-229ENST00000528672 ERBB4Q15303 1308 aa5.87□□□□□ -1.47
CD44-229ENST00000528672 ZIC2O95409 532 aaPredicted RBP5.86□□□□□ -1.47
CD44-229ENST00000528672 SCTRP47872 440 aa5.86□□□□□ -1.47
CD44-229ENST00000528672 SUZ12Q15022 739 aaKnown RBP5.86□□□□□ -1.47
CD44-229ENST00000528672 PPP1R26Q5T8A7 1209 aaPredicted RBP5.86□□□□□ -1.47
CD44-229ENST00000528672 Q6ZVU0 165 aa5.86□□□□□ -1.47
CD44-229ENST00000528672 MEIOBQ8N635 442 aa5.86□□□□□ -1.47
CD44-229ENST00000528672 ITPKCQ96DU7 683 aa5.86□□□□□ -1.47
CD44-229ENST00000528672 RANGAP1P46060 587 aaPredicted RBP5.85□□□□□ -1.47
CD44-229ENST00000528672 KANK4Q5T7N3 995 aaPredicted RBP5.85□□□□□ -1.47
CD44-229ENST00000528672 SLAIN2Q9P270 581 aa5.85□□□□□ -1.47
CD44-229ENST00000528672 SERPINA10Q9UK55 444 aa5.85□□□□□ -1.47
CD44-229ENST00000528672 KIAA1024Q9UPX6 916 aa5.85□□□□□ -1.47
CD44-229ENST00000528672 UPP2O95045 317 aa5.84□□□□□ -1.47
CD44-229ENST00000528672 PDIA4P13667 645 aaKnown RBP5.84□□□□□ -1.47
CD44-229ENST00000528672 NCOA4Q13772 614 aa5.84□□□□□ -1.47
CD44-229ENST00000528672 SCARF1Q14162 830 aa5.84□□□□□ -1.47
CD44-229ENST00000528672 MRPL14Q6P1L8 145 aaKnown RBP5.84□□□□□ -1.47
CD44-229ENST00000528672 TSEN34Q9BSV6 310 aaKnown RBP5.84□□□□□ -1.47
CD44-229ENST00000528672 USP17L3A6NCW0 530 aa5.83□□□□□ -1.48
CD44-229ENST00000528672 USP17L4A6NCW7 530 aa5.83□□□□□ -1.48
CD44-229ENST00000528672 USP17L5A8MUK1 530 aa5.83□□□□□ -1.48
CD44-229ENST00000528672 ATP9BO43861 1147 aa5.83□□□□□ -1.48
CD44-229ENST00000528672 CRTC2Q53ET0 693 aaPredicted RBP5.83□□□□□ -1.48
CD44-229ENST00000528672 USP17L2Q6R6M4 530 aa5.83□□□□□ -1.48
CD44-229ENST00000528672 USP17L1Q7RTZ2 530 aa5.83□□□□□ -1.48
CD44-229ENST00000528672 PLPP7Q8NBV4 271 aa5.83□□□□□ -1.48
CD44-229ENST00000528672 STK32AQ8WU08 396 aa5.83□□□□□ -1.48
CD44-229ENST00000528672 ZFP42Q96MM3 310 aa5.83□□□□□ -1.48
CD44-229ENST00000528672 CHIC2Q9UKJ5 165 aa5.83□□□□□ -1.48
CD44-229ENST00000528672 ZMIZ1Q9ULJ6 1067 aa5.83□□□□□ -1.48
CD44-229ENST00000528672 ERVH48-1M5A8F1 160 aa5.82□□□□□ -1.48
CD44-229ENST00000528672 ERVK-9P63128 1117 aa5.82□□□□□ -1.48
CD44-229ENST00000528672 CLDN10P78369 228 aa5.82□□□□□ -1.48
CD44-229ENST00000528672 OXLD1Q5BKU9 147 aa5.82□□□□□ -1.48
CD44-229ENST00000528672 RNF135Q8IUD6 432 aa5.82□□□□□ -1.48
CD44-229ENST00000528672 LINC00528Q8N1L1 170 aa5.82□□□□□ -1.48
CD44-229ENST00000528672 NFATC2IPQ8NCF5 419 aa5.82□□□□□ -1.48
CD44-229ENST00000528672 ZFAND3Q9H8U3 227 aa5.82□□□□□ -1.48
CD44-229ENST00000528672 ZBTB7CA1YPR0 619 aa5.81□□□□□ -1.48
CD44-229ENST00000528672 LILRA1O75019 489 aa5.81□□□□□ -1.48
CD44-229ENST00000528672 MAP7D1Q3KQU3 841 aa5.81□□□□□ -1.48
CD44-229ENST00000528672 ZNF784Q8NCA9 323 aaPredicted RBP5.81□□□□□ -1.48
CD44-229ENST00000528672 ZNF594Q96JF6 807 aaPredicted RBP5.81□□□□□ -1.48
CD44-229ENST00000528672 ZBTB7BO15156 539 aaPredicted RBP5.8□□□□□ -1.48
CD44-229ENST00000528672 LZTS3O60299 673 aaPredicted RBP5.8□□□□□ -1.48
CD44-229ENST00000528672 ADH1AP07327 375 aa5.8□□□□□ -1.48
CD44-229ENST00000528672 VSIG8P0DPA2 414 aa5.8□□□□□ -1.48
CD44-229ENST00000528672 KCNMA1Q12791 1236 aa5.8□□□□□ -1.48
CD44-229ENST00000528672 SLFNL1Q499Z3 407 aa5.8□□□□□ -1.48
CD44-229ENST00000528672 CC2D2BQ6DHV5 1058 aa5.8□□□□□ -1.48
CD44-229ENST00000528672 SIRT1Q96EB6 747 aa5.8□□□□□ -1.48
CD44-229ENST00000528672 PCDHB11Q9Y5F2 797 aa5.8□□□□□ -1.48
CD44-229ENST00000528672 SPINT1O43278 529 aa5.79□□□□□ -1.48
CD44-229ENST00000528672 DKK1O94907 266 aa5.79□□□□□ -1.48
CD44-229ENST00000528672 ADD1P35611 737 aaKnown RBP5.79□□□□□ -1.48
CD44-229ENST00000528672 CYP2U1Q7Z449 544 aa5.79□□□□□ -1.48
CD44-229ENST00000528672 CYLDQ9NQC7 956 aa5.79□□□□□ -1.48
CD44-229ENST00000528672 MKRN1Q9UHC7 482 aaKnown RBP5.79□□□□□ -1.48
CD44-229ENST00000528672 SFI1A8K8P3 1242 aa5.78□□□□□ -1.48
CD44-229ENST00000528672 GSK3AP49840 483 aa5.78□□□□□ -1.48
CD44-229ENST00000528672 CBLBQ13191 982 aa5.78□□□□□ -1.48
CD44-229ENST00000528672 PBXIP1Q96AQ6 731 aa5.78□□□□□ -1.48
CD44-229ENST00000528672 SOS2Q07890 1332 aaPredicted RBP5.77□□□□□ -1.49
CD44-229ENST00000528672 TMEM88BA6NKF7 163 aa5.77□□□□□ -1.49
CD44-229ENST00000528672 MYCP01106 439 aaPredicted RBP5.77□□□□□ -1.49
CD44-229ENST00000528672 GPC1P35052 558 aa5.77□□□□□ -1.49
CD44-229ENST00000528672 TMEM164Q5U3C3 297 aa5.77□□□□□ -1.49
CD44-229ENST00000528672 KCTD17Q8N5Z5 321 aa5.77□□□□□ -1.49
CD44-229ENST00000528672 PURBQ96QR8 312 aaKnown RBP5.77□□□□□ -1.49
CD44-229ENST00000528672 DOLKQ9UPQ8 538 aa5.77□□□□□ -1.49
CD44-229ENST00000528672 PCDHGA11Q9Y5H2 935 aa5.77□□□□□ -1.49
CD44-229ENST00000528672 ATP5J2-PTCD1G3V325 749 aa5.76□□□□□ -1.49
CD44-229ENST00000528672 GNRH1P01148 92 aa5.76□□□□□ -1.49
CD44-229ENST00000528672 BMP2P12643 396 aa5.76□□□□□ -1.49
CD44-229ENST00000528672 PTGIRP43119 386 aa5.76□□□□□ -1.49
CD44-229ENST00000528672 USP4Q13107 963 aa5.76□□□□□ -1.49
CD44-229ENST00000528672 CAPN12Q6ZSI9 719 aa5.76□□□□□ -1.49
CD44-229ENST00000528672 NPM2Q86SE8 214 aaKnown RBP5.76□□□□□ -1.49
CD44-229ENST00000528672 OGFOD1Q8N543 542 aa5.76□□□□□ -1.49
CD44-229ENST00000528672 KDF1Q8NAX2 398 aaPredicted RBP5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms