RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 FAM161AQ3B820 660 aa18.75■□□□□ 0.59
ECHDC1-220ENST00000528402 KRT28Q7Z3Y7 464 aa18.75■□□□□ 0.59
ECHDC1-220ENST00000528402 TSPYL6Q8N831 410 aa18.75■□□□□ 0.59
ECHDC1-220ENST00000528402 C8orf58Q8NAV2 365 aa18.75■□□□□ 0.59
ECHDC1-220ENST00000528402 MCM10Q7L590 875 aa18.74■□□□□ 0.59
ECHDC1-220ENST00000528402 CADPS2Q86UW7 1296 aa18.74■□□□□ 0.59
ECHDC1-220ENST00000528402 TMEM57Q8N5G2 664 aa18.74■□□□□ 0.59
ECHDC1-220ENST00000528402 ZBTB40Q9NUA8 1239 aa18.74■□□□□ 0.59
ECHDC1-220ENST00000528402 TRPM3Q9HCF6 1732 aaPredicted RBP18.74■□□□□ 0.59
ECHDC1-220ENST00000528402 GCP02774 474 aa18.74■□□□□ 0.59
ECHDC1-220ENST00000528402 USP19O94966 1318 aa18.73■□□□□ 0.59
ECHDC1-220ENST00000528402 ARHGEF25Q86VW2 580 aa18.73■□□□□ 0.59
ECHDC1-220ENST00000528402 CHMP4AQ9BY43 222 aa18.72■□□□□ 0.59
ECHDC1-220ENST00000528402 ABCC4O15439 1325 aa18.72■□□□□ 0.59
ECHDC1-220ENST00000528402 TMEM94Q12767 1356 aa18.72■□□□□ 0.59
ECHDC1-220ENST00000528402 PTPRCP08575 1304 aa18.71■□□□□ 0.59
ECHDC1-220ENST00000528402 MAP3K5Q99683 1374 aa18.71■□□□□ 0.59
ECHDC1-220ENST00000528402 ELL2O00472 640 aaPredicted RBP18.7■□□□□ 0.58
ECHDC1-220ENST00000528402 TSPYL4Q9UJ04 414 aa18.7■□□□□ 0.58
ECHDC1-220ENST00000528402 AMOTQ4VCS5 1084 aa18.69■□□□□ 0.58
ECHDC1-220ENST00000528402 IPO9Q96P70 1041 aaKnown RBP18.69■□□□□ 0.58
ECHDC1-220ENST00000528402 ZBTB7BO15156 539 aaPredicted RBP18.68■□□□□ 0.58
ECHDC1-220ENST00000528402 RGS3P49796 1198 aa18.68■□□□□ 0.58
ECHDC1-220ENST00000528402 LTV1Q96GA3 475 aaPredicted RBP18.68■□□□□ 0.58
ECHDC1-220ENST00000528402 LRRC37A3O60309 1634 aa18.68■□□□□ 0.58
ECHDC1-220ENST00000528402 CACNA1FO60840 1977 aa18.68■□□□□ 0.58
ECHDC1-220ENST00000528402 MSH6P52701 1360 aa18.68■□□□□ 0.58
ECHDC1-220ENST00000528402 NPHP3Q7Z494 1330 aa18.67■□□□□ 0.58
ECHDC1-220ENST00000528402 TAF7Q15545 349 aaPredicted RBP18.67■□□□□ 0.58
ECHDC1-220ENST00000528402 PLEKHO1Q53GL0 409 aaPredicted RBP18.67■□□□□ 0.58
ECHDC1-220ENST00000528402 STRCP1A6NGW2 1772 aa18.67■□□□□ 0.58
ECHDC1-220ENST00000528402 NCAPD2Q15021 1401 aa18.67■□□□□ 0.58
ECHDC1-220ENST00000528402 ALS2Q96Q42 1657 aa18.67■□□□□ 0.58
ECHDC1-220ENST00000528402 SMC5Q8IY18 1101 aa18.66■□□□□ 0.58
ECHDC1-220ENST00000528402 PDZRN3Q9UPQ7 1066 aa18.66■□□□□ 0.58
ECHDC1-220ENST00000528402 NBPF6Q5VWK0 638 aa18.66■□□□□ 0.58
ECHDC1-220ENST00000528402 INTS3Q68E01 1043 aaKnown RBP18.66■□□□□ 0.58
ECHDC1-220ENST00000528402 NBPF4Q96M43 638 aa18.66■□□□□ 0.58
ECHDC1-220ENST00000528402 ERICH6Q7L0X2 663 aa18.65■□□□□ 0.58
ECHDC1-220ENST00000528402 PLEKHG2Q9H7P9 1386 aa18.64■□□□□ 0.57
ECHDC1-220ENST00000528402 C8orf34Q49A92 452 aa18.64■□□□□ 0.57
ECHDC1-220ENST00000528402 LMOD2Q6P5Q4 547 aa18.64■□□□□ 0.57
ECHDC1-220ENST00000528402 GCC1Q96CN9 775 aa18.64■□□□□ 0.57
ECHDC1-220ENST00000528402 DDRGK1Q96HY6 314 aa18.64■□□□□ 0.57
ECHDC1-220ENST00000528402 AKAP4Q5JQC9 854 aa18.63■□□□□ 0.57
ECHDC1-220ENST00000528402 CCDC30Q5VVM6 783 aa18.63■□□□□ 0.57
ECHDC1-220ENST00000528402 IL17REQ8NFR9 667 aa18.63■□□□□ 0.57
ECHDC1-220ENST00000528402 ABCC6O95255 1503 aa18.63■□□□□ 0.57
ECHDC1-220ENST00000528402 CAMTA1Q9Y6Y1 1673 aa18.62■□□□□ 0.57
ECHDC1-220ENST00000528402 MSH5O43196 834 aa18.62■□□□□ 0.57
ECHDC1-220ENST00000528402 SKAP1Q86WV1 359 aa18.62■□□□□ 0.57
ECHDC1-220ENST00000528402 STK31Q9BXU1 1019 aa18.62■□□□□ 0.57
ECHDC1-220ENST00000528402 CEMIPQ8WUJ3 1361 aa18.62■□□□□ 0.57
ECHDC1-220ENST00000528402 VIRMAQ69YN4 1812 aaKnown RBP18.62■□□□□ 0.57
ECHDC1-220ENST00000528402 OVOS2A0A0G2JMS6 1433 aa18.61■□□□□ 0.57
ECHDC1-220ENST00000528402 XPCQ01831 940 aaPredicted RBP18.61■□□□□ 0.57
ECHDC1-220ENST00000528402 ANKRD24Q8TF21 1146 aa18.61■□□□□ 0.57
ECHDC1-220ENST00000528402 SLC4A2P04920 1241 aa18.6■□□□□ 0.57
ECHDC1-220ENST00000528402 HOXB7P09629 217 aa18.6■□□□□ 0.57
ECHDC1-220ENST00000528402 ZBTB47Q9UFB7 747 aaPredicted RBP18.6■□□□□ 0.57
ECHDC1-220ENST00000528402 LMTK3Q96Q04 1460 aa18.6■□□□□ 0.57
ECHDC1-220ENST00000528402 LMO7Q8WWI1 1683 aa18.6■□□□□ 0.57
ECHDC1-220ENST00000528402 ANP32EQ9BTT0 268 aa18.59■□□□□ 0.57
ECHDC1-220ENST00000528402 NOP58Q9Y2X3 529 aaKnown RBP18.59■□□□□ 0.57
ECHDC1-220ENST00000528402 ZBTB7CA1YPR0 619 aa18.58■□□□□ 0.57
ECHDC1-220ENST00000528402 HSPA2P54652 639 aa18.58■□□□□ 0.57
ECHDC1-220ENST00000528402 TNS3Q68CZ2 1445 aa18.58■□□□□ 0.57
ECHDC1-220ENST00000528402 CCT4P50991 539 aaKnown RBP18.57■□□□□ 0.56
ECHDC1-220ENST00000528402 NUCB1Q02818 461 aa18.57■□□□□ 0.56
ECHDC1-220ENST00000528402 C1orf141Q5JVX7 400 aa18.57■□□□□ 0.56
ECHDC1-220ENST00000528402 USHBP1Q8N6Y0 703 aa18.57■□□□□ 0.56
ECHDC1-220ENST00000528402 MIS18AQ9NYP9 233 aa18.57■□□□□ 0.56
ECHDC1-220ENST00000528402 RGPD2P0DJD1 1756 aa18.57■□□□□ 0.56
ECHDC1-220ENST00000528402 STRCQ7RTU9 1775 aa18.57■□□□□ 0.56
ECHDC1-220ENST00000528402 KDM4FA0A1W2PPD8 638 aa18.57■□□□□ 0.56
ECHDC1-220ENST00000528402 KRT24Q2M2I5 525 aa18.57■□□□□ 0.56
ECHDC1-220ENST00000528402 RPAP2Q8IXW5 612 aaPredicted RBP18.57■□□□□ 0.56
ECHDC1-220ENST00000528402 MED1Q15648 1581 aaPredicted RBP18.56■□□□□ 0.56
ECHDC1-220ENST00000528402 ZNF530Q6P9A1 599 aaPredicted RBP18.56■□□□□ 0.56
ECHDC1-220ENST00000528402 SPATA31A3Q5VYP0 1347 aa18.55■□□□□ 0.56
ECHDC1-220ENST00000528402 XIRP1Q702N8 1843 aaKnown RBP18.55■□□□□ 0.56
ECHDC1-220ENST00000528402 RGS12O14924 1447 aa18.55■□□□□ 0.56
ECHDC1-220ENST00000528402 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.55■□□□□ 0.563e-7■■□□□ 13.1
ECHDC1-220ENST00000528402 PXDNQ92626 1479 aa18.55■□□□□ 0.56
ECHDC1-220ENST00000528402 FAM208AQ9UK61 1670 aaKnown RBP18.55■□□□□ 0.56
ECHDC1-220ENST00000528402 ERBB3P21860 1342 aa18.55■□□□□ 0.56
ECHDC1-220ENST00000528402 TEFQ10587 303 aa18.54■□□□□ 0.56
ECHDC1-220ENST00000528402 NPM2Q86SE8 214 aaKnown RBP18.54■□□□□ 0.56
ECHDC1-220ENST00000528402 LRRC59Q96AG4 307 aaKnown RBP18.54■□□□□ 0.56
ECHDC1-220ENST00000528402 CPDO75976 1380 aa18.53■□□□□ 0.56
ECHDC1-220ENST00000528402 MYT1Q01538 1121 aa18.53■□□□□ 0.56
ECHDC1-220ENST00000528402 CHD1LQ86WJ1 897 aa18.53■□□□□ 0.56
ECHDC1-220ENST00000528402 AXIN2Q9Y2T1 843 aa18.53■□□□□ 0.56
ECHDC1-220ENST00000528402 RNMTO43148 476 aaKnown RBP18.52■□□□□ 0.56
ECHDC1-220ENST00000528402 UPF2Q9HAU5 1272 aaKnown RBP18.52■□□□□ 0.56
ECHDC1-220ENST00000528402 COL18A1P39060 1754 aa18.52■□□□□ 0.55
ECHDC1-220ENST00000528402 RGPD5Q99666 1765 aa18.52■□□□□ 0.55
ECHDC1-220ENST00000528402 ZC3H6P61129 1189 aaKnown RBP18.51■□□□□ 0.55
ECHDC1-220ENST00000528402 ANKRD44Q8N8A2 993 aa18.51■□□□□ 0.55
ECHDC1-220ENST00000528402 RAPGEF4Q8WZA2 1011 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms