RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ZNF594Q96JF6 807 aaPredicted RBP8.06□□□□□ -1.12
CD44-220ENST00000525688 IVNS1ABPQ9Y6Y0 642 aa8.06□□□□□ -1.12
CD44-220ENST00000525688 SEC13P55735 322 aa8.05□□□□□ -1.12
CD44-220ENST00000525688 INTS6LQ5JSJ4 861 aaKnown RBP8.05□□□□□ -1.12
CD44-220ENST00000525688 RC3H1Q5TC82 1133 aaKnown RBP8.05□□□□□ -1.12
CD44-220ENST00000525688 IFFO2Q5TF58 517 aa8.05□□□□□ -1.12
CD44-220ENST00000525688 VASH1Q7L8A9 365 aaPredicted RBP8.05□□□□□ -1.12
CD44-220ENST00000525688 C1orf216Q8TAB5 229 aa8.04□□□□□ -1.12
CD44-220ENST00000525688 TRIM52Q96A61 297 aa8.04□□□□□ -1.12
CD44-220ENST00000525688 ERVH48-1M5A8F1 160 aa8.03□□□□□ -1.12
CD44-220ENST00000525688 SIAH2O43255 324 aa8.03□□□□□ -1.12
CD44-220ENST00000525688 ARID4AP29374 1257 aaPredicted RBP8.03□□□□□ -1.12
CD44-220ENST00000525688 MFAP1P55081 439 aaKnown RBP8.03□□□□□ -1.12
CD44-220ENST00000525688 EHBP1Q8NDI1 1231 aa8.03□□□□□ -1.12
CD44-220ENST00000525688 CCER1Q8TC90 406 aaPredicted RBP8.03□□□□□ -1.12
CD44-220ENST00000525688 RBM19Q9Y4C8 960 aaKnown RBP8.03□□□□□ -1.12
CD44-220ENST00000525688 M0R2N6 131 aa8.02□□□□□ -1.13
CD44-220ENST00000525688 MYCP01106 439 aaPredicted RBP8.02□□□□□ -1.13
CD44-220ENST00000525688 GRM5P41594 1212 aa8.02□□□□□ -1.13
CD44-220ENST00000525688 ERVK-9P63128 1117 aa8.02□□□□□ -1.13
CD44-220ENST00000525688 LIAT1Q6ZQX7 453 aa8.02□□□□□ -1.13
CD44-220ENST00000525688 SND1Q7KZF4 910 aaKnown RBP eCLIP8.02□□□□□ -1.13
CD44-220ENST00000525688 RGS22Q8NE09 1264 aa8.02□□□□□ -1.13
CD44-220ENST00000525688 TPCN2Q8NHX9 752 aa8.02□□□□□ -1.13
CD44-220ENST00000525688 EMID1Q96A84 441 aaPredicted RBP8.02□□□□□ -1.13
CD44-220ENST00000525688 ATP2B4P23634 1241 aa8.01□□□□□ -1.13
CD44-220ENST00000525688 DHX9Q08211 1270 aaKnown RBP8.01□□□□□ -1.13
CD44-220ENST00000525688 WNT7AO00755 349 aa8□□□□□ -1.13
CD44-220ENST00000525688 SCTRP47872 440 aa8□□□□□ -1.13
CD44-220ENST00000525688 RAB15P59190 212 aa8□□□□□ -1.13
CD44-220ENST00000525688 PSME1Q06323 249 aa8□□□□□ -1.13
CD44-220ENST00000525688 OCLNQ16625 522 aa8□□□□□ -1.13
CD44-220ENST00000525688 CC2D2BQ6DHV5 1058 aa8□□□□□ -1.13
CD44-220ENST00000525688 SFI1A8K8P3 1242 aa7.99□□□□□ -1.13
CD44-220ENST00000525688 NR5A1Q13285 461 aa7.99□□□□□ -1.13
CD44-220ENST00000525688 TAS1R3Q7RTX0 852 aa7.99□□□□□ -1.13
CD44-220ENST00000525688 WASLO00401 505 aaPredicted RBP7.98□□□□□ -1.13
CD44-220ENST00000525688 ADH1CP00326 375 aa7.98□□□□□ -1.13
CD44-220ENST00000525688 FSHRP23945 695 aa7.98□□□□□ -1.13
CD44-220ENST00000525688 ARID5BQ14865 1188 aa7.98□□□□□ -1.13
CD44-220ENST00000525688 OSBPL3Q9H4L5 887 aa7.98□□□□□ -1.13
CD44-220ENST00000525688 SLC19A1P41440 591 aa7.97□□□□□ -1.13
CD44-220ENST00000525688 CXXC1Q9P0U4 656 aaPredicted RBP7.97□□□□□ -1.13
CD44-220ENST00000525688 TLL2Q9Y6L7 1015 aa7.97□□□□□ -1.13
CD44-220ENST00000525688 TMEM229AB2RXF0 380 aa7.96□□□□□ -1.14
CD44-220ENST00000525688 LILRA1O75019 489 aa7.96□□□□□ -1.14
CD44-220ENST00000525688 WEE1P30291 646 aa7.96□□□□□ -1.14
CD44-220ENST00000525688 CCDC27Q2M243 656 aa7.96□□□□□ -1.14
CD44-220ENST00000525688 NPM2Q86SE8 214 aaKnown RBP7.96□□□□□ -1.14
CD44-220ENST00000525688 CCDC116Q8IYX3 515 aa7.96□□□□□ -1.14
CD44-220ENST00000525688 ESF1Q9H501 851 aaKnown RBP7.96□□□□□ -1.14
CD44-220ENST00000525688 TMPRSS4Q9NRS4 437 aa7.96□□□□□ -1.14
CD44-220ENST00000525688 ZNF358Q9NW07 568 aa7.96□□□□□ -1.14
CD44-220ENST00000525688 PRMT3O60678 531 aa7.95□□□□□ -1.14
CD44-220ENST00000525688 SCNN1DP51172 638 aa7.95□□□□□ -1.14
CD44-220ENST00000525688 MMRN1Q13201 1228 aa7.95□□□□□ -1.14
CD44-220ENST00000525688 PPP1R26Q5T8A7 1209 aaPredicted RBP7.95□□□□□ -1.14
CD44-220ENST00000525688 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.95□□□□□ -1.14
CD44-220ENST00000525688 ZNF784Q8NCA9 323 aaPredicted RBP7.95□□□□□ -1.14
CD44-220ENST00000525688 MRGPRX2Q96LB1 330 aa7.95□□□□□ -1.14
CD44-220ENST00000525688 PRIMPOLQ96LW4 560 aa7.95□□□□□ -1.14
CD44-220ENST00000525688 MTMR7Q9Y216 660 aa7.95□□□□□ -1.14
CD44-220ENST00000525688 MYT1Q01538 1121 aa7.94□□□□□ -1.14
CD44-220ENST00000525688 SPRYD7Q5W111 196 aa7.94□□□□□ -1.14
CD44-220ENST00000525688 TSEN2Q8NCE0 465 aaKnown RBP7.94□□□□□ -1.14
CD44-220ENST00000525688 HINFPQ9BQA5 517 aa7.94□□□□□ -1.14
CD44-220ENST00000525688 CYLDQ9NQC7 956 aa7.94□□□□□ -1.14
CD44-220ENST00000525688 SOWAHDA6NJG2 315 aa7.93□□□□□ -1.14
CD44-220ENST00000525688 BACH1O14867 736 aa7.93□□□□□ -1.14
CD44-220ENST00000525688 GNRH1P01148 92 aa7.93□□□□□ -1.14
CD44-220ENST00000525688 GDF10P55107 478 aa7.93□□□□□ -1.14
CD44-220ENST00000525688 SLC4A9Q96Q91 983 aa7.93□□□□□ -1.14
CD44-220ENST00000525688 EGFL7Q9UHF1 273 aa7.93□□□□□ -1.14
CD44-220ENST00000525688 EMILIN1Q9Y6C2 1016 aa7.93□□□□□ -1.14
CD44-220ENST00000525688 INHAP05111 366 aa7.92□□□□□ -1.14
CD44-220ENST00000525688 NR3C2P08235 984 aa7.92□□□□□ -1.14
CD44-220ENST00000525688 SERPINB4P48594 390 aa7.92□□□□□ -1.14
CD44-220ENST00000525688 CYP2U1Q7Z449 544 aa7.92□□□□□ -1.14
CD44-220ENST00000525688 COL26A1Q96A83 441 aa7.92□□□□□ -1.14
CD44-220ENST00000525688 PGPEP1Q9NXJ5 209 aa7.92□□□□□ -1.14
CD44-220ENST00000525688 IGFBP4P22692 258 aa7.91□□□□□ -1.14
CD44-220ENST00000525688 SCNN1AP37088 669 aa7.91□□□□□ -1.14
CD44-220ENST00000525688 EPHA4P54764 986 aa7.91□□□□□ -1.14
CD44-220ENST00000525688 ZNF598Q86UK7 904 aaKnown RBP7.91□□□□□ -1.14
CD44-220ENST00000525688 GAS2L2Q8NHY3 880 aa7.91□□□□□ -1.14
CD44-220ENST00000525688 PTCD1O75127 700 aaKnown RBP7.9□□□□□ -1.14
CD44-220ENST00000525688 ADD1P35611 737 aaKnown RBP7.9□□□□□ -1.14
CD44-220ENST00000525688 ESCO1Q5FWF5 840 aa7.9□□□□□ -1.14
CD44-220ENST00000525688 ETNK1Q9HBU6 452 aa7.9□□□□□ -1.14
CD44-220ENST00000525688 FOXO3O43524 673 aa7.89□□□□□ -1.15
CD44-220ENST00000525688 FKBP5Q13451 457 aaPredicted RBP7.89□□□□□ -1.15
CD44-220ENST00000525688 ZNF697Q5TEC3 545 aa7.89□□□□□ -1.15
CD44-220ENST00000525688 PKD2L1Q9P0L9 805 aa7.89□□□□□ -1.15
CD44-220ENST00000525688 AMOTL2Q9Y2J4 779 aa7.89□□□□□ -1.15
CD44-220ENST00000525688 V9GY48 417 aaPredicted RBP7.89□□□□□ -1.15
CD44-220ENST00000525688 A0A0G2JS52 829 aa7.88□□□□□ -1.15
CD44-220ENST00000525688 LGR5O75473 907 aa7.88□□□□□ -1.15
CD44-220ENST00000525688 FOXK2Q01167 660 aa7.88□□□□□ -1.15
CD44-220ENST00000525688 MTFR1Q15390 333 aa7.88□□□□□ -1.15
CD44-220ENST00000525688 TNS4Q8IZW8 715 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms