RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 KIAA0232Q92628 1395 aa10.28□□□□□ -0.76
CSMD1-213ENST00000523488 ZKSCAN2Q63HK3 967 aa10.28□□□□□ -0.76
CSMD1-213ENST00000523488 CTNNA3Q9UI47 895 aa10.28□□□□□ -0.76
CSMD1-213ENST00000523488 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.28□□□□□ -0.76
CSMD1-213ENST00000523488 BRD1O95696 1058 aa10.27□□□□□ -0.77
CSMD1-213ENST00000523488 TRIM27P14373 513 aa10.27□□□□□ -0.77
CSMD1-213ENST00000523488 KIAA2012Q0VF49 1180 aa10.27□□□□□ -0.77
CSMD1-213ENST00000523488 TAF7LQ5H9L4 462 aa10.27□□□□□ -0.77
CSMD1-213ENST00000523488 DDX41Q9UJV9 622 aaKnown RBP10.27□□□□□ -0.77
CSMD1-213ENST00000523488 MBD3O95983 291 aa10.27□□□□□ -0.77
CSMD1-213ENST00000523488 ZNF771Q7L3S4 317 aaPredicted RBP10.27□□□□□ -0.77
CSMD1-213ENST00000523488 DZIP1LQ8IYY4 767 aaKnown RBP10.27□□□□□ -0.77
CSMD1-213ENST00000523488 UBXN6Q9BZV1 441 aa10.27□□□□□ -0.77
CSMD1-213ENST00000523488 CHD1LQ86WJ1 897 aa10.27□□□□□ -0.77
CSMD1-213ENST00000523488 KIAA1524Q8TCG1 905 aa10.27□□□□□ -0.77
CSMD1-213ENST00000523488 INTS4Q96HW7 963 aaKnown RBP10.27□□□□□ -0.77
CSMD1-213ENST00000523488 BCL2L12Q9HB09 334 aa10.26□□□□□ -0.77
CSMD1-213ENST00000523488 TOPAZ1Q8N9V7 1692 aa10.26□□□□□ -0.77
CSMD1-213ENST00000523488 SALL3Q9BXA9 1300 aa10.26□□□□□ -0.77
CSMD1-213ENST00000523488 DLC1Q96QB1 1528 aa10.26□□□□□ -0.77
CSMD1-213ENST00000523488 ATF7IPQ6VMQ6 1270 aa10.25□□□□□ -0.77
CSMD1-213ENST00000523488 TBC1D9Q6ZT07 1266 aa10.25□□□□□ -0.77
CSMD1-213ENST00000523488 USP26Q9BXU7 913 aa10.25□□□□□ -0.77
CSMD1-213ENST00000523488 NSD3Q9BZ95 1437 aa10.25□□□□□ -0.77
CSMD1-213ENST00000523488 VGLL3A8MV65 326 aa10.25□□□□□ -0.77
CSMD1-213ENST00000523488 CAVIN1Q6NZI2 390 aaKnown RBP10.25□□□□□ -0.77
CSMD1-213ENST00000523488 PLCD3Q8N3E9 789 aa10.25□□□□□ -0.77
CSMD1-213ENST00000523488 OSBPL3Q9H4L5 887 aa10.25□□□□□ -0.77
CSMD1-213ENST00000523488 TRIM35Q9UPQ4 493 aa10.25□□□□□ -0.77
CSMD1-213ENST00000523488 ERBB3P21860 1342 aa10.25□□□□□ -0.77
CSMD1-213ENST00000523488 COL22A1Q8NFW1 1626 aaPredicted RBP10.25□□□□□ -0.77
CSMD1-213ENST00000523488 RIMS1Q86UR5 1692 aaKnown RBP10.24□□□□□ -0.77
CSMD1-213ENST00000523488 PDCL2Q8N4E4 241 aa10.24□□□□□ -0.77
CSMD1-213ENST00000523488 CGNQ9P2M7 1197 aaKnown RBP10.24□□□□□ -0.77
CSMD1-213ENST00000523488 SPATA31D1Q6ZQQ2 1576 aa10.24□□□□□ -0.77
CSMD1-213ENST00000523488 MAP2P11137 1827 aaKnown RBP10.24□□□□□ -0.77
CSMD1-213ENST00000523488 CHD1O14646 1710 aa10.24□□□□□ -0.77
CSMD1-213ENST00000523488 ZBTB7BO15156 539 aaPredicted RBP10.24□□□□□ -0.77
CSMD1-213ENST00000523488 FMN2Q9NZ56 1722 aa10.24□□□□□ -0.77
CSMD1-213ENST00000523488 TSPOAP1O95153 1857 aa10.24□□□□□ -0.77
CSMD1-213ENST00000523488 YTHDC2Q9H6S0 1430 aaKnown RBP10.24□□□□□ -0.77
CSMD1-213ENST00000523488 RGL3Q3MIN7 710 aa10.24□□□□□ -0.77
CSMD1-213ENST00000523488 PLPPR3Q6T4P5 718 aa10.24□□□□□ -0.77
CSMD1-213ENST00000523488 TPM3P06753 285 aa10.23□□□□□ -0.77
CSMD1-213ENST00000523488 NOLC1Q14978 699 aaKnown RBP eCLIP10.23□□□□□ -0.77
CSMD1-213ENST00000523488 KIF1BPQ96EK5 621 aa10.23□□□□□ -0.77
CSMD1-213ENST00000523488 PTPRMP28827 1452 aa10.23□□□□□ -0.77
CSMD1-213ENST00000523488 GSPT1P15170 499 aaKnown RBP10.22□□□□□ -0.77
CSMD1-213ENST00000523488 MCTP1Q6DN14 999 aa10.22□□□□□ -0.77
CSMD1-213ENST00000523488 SIRT2Q8IXJ6 389 aa10.22□□□□□ -0.77
CSMD1-213ENST00000523488 CHGAP10645 457 aaKnown RBP10.22□□□□□ -0.77
CSMD1-213ENST00000523488 KCNF1Q9H3M0 494 aa10.22□□□□□ -0.77
CSMD1-213ENST00000523488 NCBP1Q09161 790 aaKnown RBP10.22□□□□□ -0.77
CSMD1-213ENST00000523488 NEUROD2Q15784 382 aa10.22□□□□□ -0.77
CSMD1-213ENST00000523488 IRX5P78411 483 aaPredicted RBP10.21□□□□□ -0.77
CSMD1-213ENST00000523488 MAPK8IP2Q13387 824 aaPredicted RBP10.21□□□□□ -0.77
CSMD1-213ENST00000523488 RBM43Q6ZSC3 357 aaKnown RBP10.21□□□□□ -0.77
CSMD1-213ENST00000523488 SPDYE4A6NLX3 237 aa10.21□□□□□ -0.77
CSMD1-213ENST00000523488 IGSF3O75054 1194 aa10.21□□□□□ -0.77
CSMD1-213ENST00000523488 ZNF853P0CG23 659 aa10.21□□□□□ -0.77
CSMD1-213ENST00000523488 FTSJ3Q8IY81 847 aaKnown RBP10.21□□□□□ -0.77
CSMD1-213ENST00000523488 TCP11L2Q8N4U5 519 aa10.21□□□□□ -0.77
CSMD1-213ENST00000523488 KIF3AQ9Y496 699 aa10.21□□□□□ -0.77
CSMD1-213ENST00000523488 CHAF1AQ13111 956 aaPredicted RBP10.2□□□□□ -0.78
CSMD1-213ENST00000523488 TERF2Q15554 542 aa10.2□□□□□ -0.78
CSMD1-213ENST00000523488 ZNF830Q96NB3 372 aaPredicted RBP10.2□□□□□ -0.78
CSMD1-213ENST00000523488 NSFL1CQ9UNZ2 370 aaKnown RBP10.2□□□□□ -0.78
CSMD1-213ENST00000523488 MUM1L1Q5H9M0 696 aa10.2□□□□□ -0.78
CSMD1-213ENST00000523488 ABCC6O95255 1503 aa10.2□□□□□ -0.78
CSMD1-213ENST00000523488 PXDNLA1KZ92 1463 aa10.2□□□□□ -0.78
CSMD1-213ENST00000523488 CCDC171Q6TFL3 1326 aa10.2□□□□□ -0.78
CSMD1-213ENST00000523488 CDC45O75419 566 aa10.2□□□□□ -0.78
CSMD1-213ENST00000523488 PAXIP1Q6ZW49 1069 aaPredicted RBP10.2□□□□□ -0.78
CSMD1-213ENST00000523488 RNF214Q8ND24 703 aa10.2□□□□□ -0.78
CSMD1-213ENST00000523488 TSC1Q92574 1164 aa10.19□□□□□ -0.78
CSMD1-213ENST00000523488 BCL2L13Q9BXK5 485 aa10.19□□□□□ -0.78
CSMD1-213ENST00000523488 TSPYL1Q9H0U9 437 aa10.19□□□□□ -0.78
CSMD1-213ENST00000523488 MYO5BQ9ULV0 1848 aa10.19□□□□□ -0.78
CSMD1-213ENST00000523488 TSPY4P0CV99 314 aa10.19□□□□□ -0.78
CSMD1-213ENST00000523488 TSPY10P0CW01 314 aa10.19□□□□□ -0.78
CSMD1-213ENST00000523488 ARHGEF10O15013 1369 aa10.19□□□□□ -0.78
CSMD1-213ENST00000523488 CAPN2P17655 700 aa10.18□□□□□ -0.78
CSMD1-213ENST00000523488 ANAPC15P60006 121 aa10.18□□□□□ -0.78
CSMD1-213ENST00000523488 CDC25BP30305 580 aa10.18□□□□□ -0.78
CSMD1-213ENST00000523488 PLEKHM2Q8IWE5 1019 aa10.18□□□□□ -0.78
CSMD1-213ENST00000523488 PLEKHD1A6NEE1 506 aa10.18□□□□□ -0.78
CSMD1-213ENST00000523488 MCM2P49736 904 aa10.18□□□□□ -0.78
CSMD1-213ENST00000523488 TTC22Q5TAA0 569 aa10.18□□□□□ -0.78
CSMD1-213ENST00000523488 KIF18AQ8NI77 898 aa10.18□□□□□ -0.78
CSMD1-213ENST00000523488 ATP7BP35670 1465 aa10.18□□□□□ -0.78
CSMD1-213ENST00000523488 TEX2Q8IWB9 1127 aa10.17□□□□□ -0.78
CSMD1-213ENST00000523488 MPNDQ8N594 471 aa10.17□□□□□ -0.78
CSMD1-213ENST00000523488 SSH1Q8WYL5 1049 aa10.17□□□□□ -0.78
CSMD1-213ENST00000523488 IQUBQ8NA54 791 aa10.17□□□□□ -0.78
CSMD1-213ENST00000523488 DNAJC2Q99543 621 aaKnown RBP10.17□□□□□ -0.78
CSMD1-213ENST00000523488 TSPY26PQ9H489 355 aa10.17□□□□□ -0.78
CSMD1-213ENST00000523488 DCTPP1Q9H773 170 aa10.17□□□□□ -0.78
CSMD1-213ENST00000523488 MSH6P52701 1360 aa10.17□□□□□ -0.78
CSMD1-213ENST00000523488 ATG3Q9NT62 314 aa10.17□□□□□ -0.78
CSMD1-213ENST00000523488 FAM177BA6PVY3 158 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms