RNA–Protein interactions for RNA: ENST00000520946.1

MRPS28-206, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 5

Gene MRPS28, Length 411 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-206ENST00000520946 TONSLQ96HA7 1378 aa16.16■□□□□ 0.18
MRPS28-206ENST00000520946 USP47Q96K76 1375 aa16.16■□□□□ 0.18
MRPS28-206ENST00000520946 HOXC9P31274 260 aa16.16■□□□□ 0.18
MRPS28-206ENST00000520946 RAPGEF4Q8WZA2 1011 aa16.16■□□□□ 0.18
MRPS28-206ENST00000520946 PUS7Q96PZ0 661 aaKnown RBP16.16■□□□□ 0.18
MRPS28-206ENST00000520946 CD163L1Q9NR16 1453 aa16.16■□□□□ 0.18
MRPS28-206ENST00000520946 PAPPAQ13219 1627 aa16.15■□□□□ 0.18
MRPS28-206ENST00000520946 MAP3K19Q56UN5 1328 aa16.15■□□□□ 0.18
MRPS28-206ENST00000520946 NLGN2Q8NFZ4 835 aa16.14■□□□□ 0.17
MRPS28-206ENST00000520946 SMG6Q86US8 1419 aaKnown RBP16.12■□□□□ 0.17
MRPS28-206ENST00000520946 TATP17735 454 aaPredicted RBP16.12■□□□□ 0.17
MRPS28-206ENST00000520946 MSL1Q68DK7 614 aa16.12■□□□□ 0.17
MRPS28-206ENST00000520946 USP54Q70EL1 1684 aa16.11■□□□□ 0.17
MRPS28-206ENST00000520946 FBLN1P23142 703 aa16.11■□□□□ 0.17
MRPS28-206ENST00000520946 COL23A1Q86Y22 540 aaPredicted RBP16.11■□□□□ 0.17
MRPS28-206ENST00000520946 FLAD1Q8NFF5 587 aa16.11■□□□□ 0.17
MRPS28-206ENST00000520946 CGNL1Q0VF96 1302 aa16.11■□□□□ 0.17
MRPS28-206ENST00000520946 FAM208AQ9UK61 1670 aaKnown RBP16.11■□□□□ 0.17
MRPS28-206ENST00000520946 ST20-MTHFSA0A0A6YYL1 179 aa16.1■□□□□ 0.17
MRPS28-206ENST00000520946 RRS1Q15050 365 aaKnown RBP16.1■□□□□ 0.17
MRPS28-206ENST00000520946 USHBP1Q8N6Y0 703 aa16.1■□□□□ 0.17
MRPS28-206ENST00000520946 NBPF6Q5VWK0 638 aa16.08■□□□□ 0.16
MRPS28-206ENST00000520946 MPRIPQ6WCQ1 1025 aa16.08■□□□□ 0.16
MRPS28-206ENST00000520946 NBPF4Q96M43 638 aa16.08■□□□□ 0.16
MRPS28-206ENST00000520946 YBX3P16989 372 aaKnown RBP eCLIP16.07■□□□□ 0.16
MRPS28-206ENST00000520946 AK7Q96M32 723 aa16.07■□□□□ 0.16
MRPS28-206ENST00000520946 GGNBP2Q9H3C7 697 aa16.07■□□□□ 0.16
MRPS28-206ENST00000520946 GPBP1L1Q9HC44 474 aaPredicted RBP16.07■□□□□ 0.16
MRPS28-206ENST00000520946 PCDH11XQ9BZA7 1347 aa16.07■□□□□ 0.16
MRPS28-206ENST00000520946 PCDH11YQ9BZA8 1340 aa16.07■□□□□ 0.16
MRPS28-206ENST00000520946 RTL1A6NKG5 1358 aa16.07■□□□□ 0.16
MRPS28-206ENST00000520946 QSER1Q2KHR3 1735 aa16.07■□□□□ 0.16
MRPS28-206ENST00000520946 DOT1LQ8TEK3 1739 aa16.07■□□□□ 0.16
MRPS28-206ENST00000520946 TMF1P82094 1093 aa16.06■□□□□ 0.16
MRPS28-206ENST00000520946 SMARCC1Q92922 1105 aaPredicted RBP16.06■□□□□ 0.16
MRPS28-206ENST00000520946 CD2APQ9Y5K6 639 aa16.06■□□□□ 0.16
MRPS28-206ENST00000520946 MEGF6O75095 1541 aa16.05■□□□□ 0.16
MRPS28-206ENST00000520946 NSD2O96028 1365 aa16.05■□□□□ 0.16
MRPS28-206ENST00000520946 PHF14O94880 888 aa16.04■□□□□ 0.16
MRPS28-206ENST00000520946 ZNF526Q8TF50 670 aaPredicted RBP16.04■□□□□ 0.16
MRPS28-206ENST00000520946 PALLDQ8WX93 1383 aa16.03■□□□□ 0.16
MRPS28-206ENST00000520946 FYB1O15117 783 aa16.03■□□□□ 0.16
MRPS28-206ENST00000520946 PPM1GO15355 546 aaPredicted RBP16.03■□□□□ 0.16
MRPS28-206ENST00000520946 CDCA8Q53HL2 280 aa16.03■□□□□ 0.16
MRPS28-206ENST00000520946 TESK2Q96S53 571 aa16.03■□□□□ 0.16
MRPS28-206ENST00000520946 HSP90AB2PQ58FF8 381 aa16.02■□□□□ 0.16
MRPS28-206ENST00000520946 LY75O60449 1722 aa16.02■□□□□ 0.15
MRPS28-206ENST00000520946 WWC3Q9ULE0 1092 aa16.01■□□□□ 0.15
MRPS28-206ENST00000520946 SPG7Q9UQ90 795 aa16.01■□□□□ 0.15
MRPS28-206ENST00000520946 ATP10DQ9P241 1426 aa16.01■□□□□ 0.15
MRPS28-206ENST00000520946 TUBGCP6Q96RT7 1819 aa16.01■□□□□ 0.15
MRPS28-206ENST00000520946 RGPD2P0DJD1 1756 aa16■□□□□ 0.15
MRPS28-206ENST00000520946 IFFO2Q5TF58 517 aa16■□□□□ 0.15
MRPS28-206ENST00000520946 FLT4P35916 1363 aa16■□□□□ 0.15
MRPS28-206ENST00000520946 NSD3Q9BZ95 1437 aa15.99■□□□□ 0.15
MRPS28-206ENST00000520946 INSRP06213 1382 aa15.99■□□□□ 0.15
MRPS28-206ENST00000520946 IGSF1Q8N6C5 1336 aa15.97■□□□□ 0.15
MRPS28-206ENST00000520946 COL24A1Q17RW2 1714 aa15.97■□□□□ 0.15
MRPS28-206ENST00000520946 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.97■□□□□ 0.15
MRPS28-206ENST00000520946 TMOD3Q9NYL9 352 aa15.97■□□□□ 0.15
MRPS28-206ENST00000520946 SHANK3Q9BYB0 1731 aa15.97■□□□□ 0.15
MRPS28-206ENST00000520946 UTRNP46939 3433 aa15.96■□□□□ 0.15
MRPS28-206ENST00000520946 CYP27B1O15528 508 aa15.96■□□□□ 0.15
MRPS28-206ENST00000520946 KIF24Q5T7B8 1368 aa15.96■□□□□ 0.15
MRPS28-206ENST00000520946 C5P01031 1676 aa15.95■□□□□ 0.14
MRPS28-206ENST00000520946 SSFA2P28290 1259 aa15.95■□□□□ 0.14
MRPS28-206ENST00000520946 PIGBQ92521 554 aa15.95■□□□□ 0.14
MRPS28-206ENST00000520946 LOC102724428A0A0B4J2F2 783 aa15.94■□□□□ 0.14
MRPS28-206ENST00000520946 GNPATO15228 680 aa15.94■□□□□ 0.14
MRPS28-206ENST00000520946 HSPA6P17066 643 aa15.94■□□□□ 0.14
MRPS28-206ENST00000520946 ATP6V1AP38606 617 aa15.94■□□□□ 0.14
MRPS28-206ENST00000520946 SIK1P57059 783 aa15.94■□□□□ 0.14
MRPS28-206ENST00000520946 EMILIN1Q9Y6C2 1016 aa15.94■□□□□ 0.14
MRPS28-206ENST00000520946 SMIM5Q71RC9 77 aa15.93■□□□□ 0.14
MRPS28-206ENST00000520946 IFNL2Q8IZJ0 200 aa15.92■□□□□ 0.14
MRPS28-206ENST00000520946 POLR3GLQ9BT43 218 aa15.91■□□□□ 0.14
MRPS28-206ENST00000520946 C4BP0C0L5 1744 aa15.91■□□□□ 0.14
MRPS28-206ENST00000520946 MMP10P09238 476 aa15.9■□□□□ 0.14
MRPS28-206ENST00000520946 NKX1-1Q15270 411 aaPredicted RBP15.9■□□□□ 0.14
MRPS28-206ENST00000520946 TRAPPC3LQ5T215 181 aa15.9■□□□□ 0.14
MRPS28-206ENST00000520946 LINC00116Q8NCU8 138 aa15.9■□□□□ 0.14
MRPS28-206ENST00000520946 RTCBQ9Y3I0 505 aaKnown RBP15.9■□□□□ 0.14
MRPS28-206ENST00000520946 RBM42Q9BTD8 480 aaKnown RBP15.89■□□□□ 0.13
MRPS28-206ENST00000520946 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.89■□□□□ 0.13
MRPS28-206ENST00000520946 ASAP1Q9ULH1 1129 aa15.89■□□□□ 0.13
MRPS28-206ENST00000520946 BCS1LQ9Y276 419 aa15.89■□□□□ 0.13
MRPS28-206ENST00000520946 AMIGO3Q86WK7 504 aa15.88■□□□□ 0.13
MRPS28-206ENST00000520946 NLGN1Q8N2Q7 840 aa15.88■□□□□ 0.13
MRPS28-206ENST00000520946 EYA1Q99502 592 aa15.88■□□□□ 0.13
MRPS28-206ENST00000520946 TAF1LQ8IZX4 1826 aa15.88■□□□□ 0.13
MRPS28-206ENST00000520946 KIF20BQ96Q89 1820 aa15.87■□□□□ 0.13
MRPS28-206ENST00000520946 TNNT2P45379 298 aaPredicted RBP15.87■□□□□ 0.13
MRPS28-206ENST00000520946 ARHGAP27Q6ZUM4 889 aa15.87■□□□□ 0.13
MRPS28-206ENST00000520946 WASHC2AQ641Q2 1341 aa15.87■□□□□ 0.13
MRPS28-206ENST00000520946 PHKG2P15735 406 aa15.86■□□□□ 0.13
MRPS28-206ENST00000520946 RFC4P35249 363 aa15.86■□□□□ 0.13
MRPS28-206ENST00000520946 TGFB2P61812 414 aa15.86■□□□□ 0.13
MRPS28-206ENST00000520946 ITPK1Q13572 414 aa15.86■□□□□ 0.13
MRPS28-206ENST00000520946 CARD14Q9BXL6 1004 aa15.86■□□□□ 0.13
MRPS28-206ENST00000520946 CCDC87Q9NVE4 849 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms