RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 ANO2Q9NQ90 1003 aa12.5□□□□□ -0.41
MCF2-209ENST00000520602 TBC1D32Q96NH3 1257 aa12.5□□□□□ -0.41
MCF2-209ENST00000520602 REC8O95072 547 aa12.5□□□□□ -0.41
MCF2-209ENST00000520602 ANXA1P04083 346 aa12.5□□□□□ -0.41
MCF2-209ENST00000520602 FLIIQ13045 1269 aa12.5□□□□□ -0.41
MCF2-209ENST00000520602 TTC5Q8N0Z6 440 aa12.5□□□□□ -0.41
MCF2-209ENST00000520602 LRRC59Q96AG4 307 aaKnown RBP12.5□□□□□ -0.41
MCF2-209ENST00000520602 RIMBP3CA6NJZ7 1639 aa12.5□□□□□ -0.41
MCF2-209ENST00000520602 RIMBP3BA6NNM3 1639 aa12.5□□□□□ -0.41
MCF2-209ENST00000520602 RIMBP3Q9UFD9 1639 aa12.5□□□□□ -0.41
MCF2-209ENST00000520602 ST18O60284 1047 aa12.49□□□□□ -0.41
MCF2-209ENST00000520602 IL1RAPL2Q9NP60 686 aa12.49□□□□□ -0.41
MCF2-209ENST00000520602 CCDC9Q9Y3X0 531 aaKnown RBP12.49□□□□□ -0.41
MCF2-209ENST00000520602 C16orf71Q8IYS4 520 aaPredicted RBP12.49□□□□□ -0.41
MCF2-209ENST00000520602 HOXC9P31274 260 aa12.49□□□□□ -0.41
MCF2-209ENST00000520602 SRCIN1Q9C0H9 1055 aa12.49□□□□□ -0.41
MCF2-209ENST00000520602 ATP7BP35670 1465 aa12.48□□□□□ -0.41
MCF2-209ENST00000520602 G2E3Q7L622 706 aa12.48□□□□□ -0.41
MCF2-209ENST00000520602 CHL1O00533 1208 aa12.48□□□□□ -0.41
MCF2-209ENST00000520602 KRT28Q7Z3Y7 464 aa12.47□□□□□ -0.41
MCF2-209ENST00000520602 RIC3Q7Z5B4 369 aa12.47□□□□□ -0.41
MCF2-209ENST00000520602 ORAI2Q96SN7 254 aa12.47□□□□□ -0.41
MCF2-209ENST00000520602 HDAC5Q9UQL6 1122 aa12.47□□□□□ -0.41
MCF2-209ENST00000520602 PTPRCP08575 1304 aa12.47□□□□□ -0.41
MCF2-209ENST00000520602 NEXNQ0ZGT2 675 aa12.47□□□□□ -0.41
MCF2-209ENST00000520602 LRRCC1Q9C099 1032 aa12.47□□□□□ -0.41
MCF2-209ENST00000520602 PLEKHG1Q9ULL1 1385 aa12.47□□□□□ -0.41
MCF2-209ENST00000520602 ARHGEF40Q8TER5 1519 aa12.47□□□□□ -0.41
MCF2-209ENST00000520602 FAM135BQ49AJ0 1406 aa12.47□□□□□ -0.41
MCF2-209ENST00000520602 TSHZ3Q63HK5 1081 aa12.46□□□□□ -0.41
MCF2-209ENST00000520602 TBC1D9Q6ZT07 1266 aa12.46□□□□□ -0.41
MCF2-209ENST00000520602 EVA1CP58658 441 aa12.46□□□□□ -0.41
MCF2-209ENST00000520602 BMP2KLQ5H9B9 411 aa12.46□□□□□ -0.41
MCF2-209ENST00000520602 SRGAP3O43295 1099 aa12.46□□□□□ -0.42
MCF2-209ENST00000520602 DDX58O95786 925 aaKnown RBP12.46□□□□□ -0.42
MCF2-209ENST00000520602 FOXD4L6Q3SYB3 417 aaPredicted RBP12.46□□□□□ -0.42
MCF2-209ENST00000520602 FOXD4L3Q6VB84 417 aaPredicted RBP12.46□□□□□ -0.42
MCF2-209ENST00000520602 LRRFIP2Q9Y608 721 aaKnown RBP12.46□□□□□ -0.42
MCF2-209ENST00000520602 PPLO60437 1756 aa12.46□□□□□ -0.42
MCF2-209ENST00000520602 AATKQ6ZMQ8 1374 aa12.46□□□□□ -0.42
MCF2-209ENST00000520602 CLTCQ00610 1675 aaKnown RBP12.45□□□□□ -0.42
MCF2-209ENST00000520602 MAP4K4O95819 1239 aaPredicted RBP12.45□□□□□ -0.42
MCF2-209ENST00000520602 MYL6BP14649 208 aa12.45□□□□□ -0.42
MCF2-209ENST00000520602 GPATCH3Q96I76 525 aa12.45□□□□□ -0.42
MCF2-209ENST00000520602 TATP17735 454 aaPredicted RBP12.45□□□□□ -0.42
MCF2-209ENST00000520602 NEURL4Q96JN8 1562 aa12.45□□□□□ -0.42
MCF2-209ENST00000520602 IFIT2P09913 472 aaKnown RBP12.44□□□□□ -0.42
MCF2-209ENST00000520602 ANKRD44Q8N8A2 993 aa12.44□□□□□ -0.42
MCF2-209ENST00000520602 SBNO1A3KN83 1393 aa12.44□□□□□ -0.42
MCF2-209ENST00000520602 L1TD1Q5T7N2 865 aaKnown RBP12.44□□□□□ -0.42
MCF2-209ENST00000520602 ANKRD24Q8TF21 1146 aa12.44□□□□□ -0.42
MCF2-209ENST00000520602 TRIM44Q96DX7 344 aaPredicted RBP12.44□□□□□ -0.42
MCF2-209ENST00000520602 PNPLA6Q8IY17 1366 aa12.44□□□□□ -0.42
MCF2-209ENST00000520602 GOLGA6L3A6NEY3 463 aa12.43□□□□□ -0.42
MCF2-209ENST00000520602 FGD1P98174 961 aa12.43□□□□□ -0.42
MCF2-209ENST00000520602 NUTM1Q86Y26 1132 aa12.43□□□□□ -0.42
MCF2-209ENST00000520602 GCP02774 474 aa12.43□□□□□ -0.42
MCF2-209ENST00000520602 CHRNA2Q15822 529 aa12.43□□□□□ -0.42
MCF2-209ENST00000520602 G3BP1Q13283 466 aaKnown RBP eCLIP12.43□□□□□ -0.42
MCF2-209ENST00000520602 DIAPH3Q9NSV4 1193 aa12.43□□□□□ -0.42
MCF2-209ENST00000520602 PI4KAP2A4QPH2 592 aa12.43□□□□□ -0.42
MCF2-209ENST00000520602 USP6P35125 1406 aa12.43□□□□□ -0.42
MCF2-209ENST00000520602 PI4KAP1Q8N8J0 262 aa12.43□□□□□ -0.42
MCF2-209ENST00000520602 PREX1Q8TCU6 1659 aa12.43□□□□□ -0.42
MCF2-209ENST00000520602 STRN4Q9NRL3 753 aa12.43□□□□□ -0.42
MCF2-209ENST00000520602 NEK4P51957 841 aa12.42□□□□□ -0.42
MCF2-209ENST00000520602 CEP85Q6P2H3 762 aa12.42□□□□□ -0.42
MCF2-209ENST00000520602 CABLES1Q8TDN4 633 aa12.42□□□□□ -0.42
MCF2-209ENST00000520602 TAOK2Q9UL54 1235 aa12.42□□□□□ -0.42
MCF2-209ENST00000520602 DIP2BQ9P265 1576 aa12.42□□□□□ -0.42
MCF2-209ENST00000520602 DDX11L8A8MPP1 907 aa12.42□□□□□ -0.42
MCF2-209ENST00000520602 ZNF853P0CG23 659 aa12.42□□□□□ -0.42
MCF2-209ENST00000520602 OTUD7AQ8TE49 926 aaPredicted RBP12.42□□□□□ -0.42
MCF2-209ENST00000520602 DCTPP1Q9H773 170 aa12.42□□□□□ -0.42
MCF2-209ENST00000520602 NAP1L2Q9ULW6 460 aaPredicted RBP12.42□□□□□ -0.42
MCF2-209ENST00000520602 NLRP1Q9C000 1473 aa12.41□□□□□ -0.42
MCF2-209ENST00000520602 NBPF6Q5VWK0 638 aa12.41□□□□□ -0.42
MCF2-209ENST00000520602 CLASRPQ8N2M8 674 aaKnown RBP12.41□□□□□ -0.42
MCF2-209ENST00000520602 NBPF4Q96M43 638 aa12.41□□□□□ -0.42
MCF2-209ENST00000520602 SIL1Q9H173 461 aa12.41□□□□□ -0.42
MCF2-209ENST00000520602 LGR6Q9HBX8 967 aa12.41□□□□□ -0.42
MCF2-209ENST00000520602 MYOM1P52179 1685 aa12.41□□□□□ -0.42
MCF2-209ENST00000520602 TMEM131LA2VDJ0 1609 aa12.41□□□□□ -0.42
MCF2-209ENST00000520602 ERC2O15083 957 aa12.41□□□□□ -0.42
MCF2-209ENST00000520602 AMOTQ4VCS5 1084 aa12.41□□□□□ -0.42
MCF2-209ENST00000520602 IP6K1Q92551 441 aa12.41□□□□□ -0.42
MCF2-209ENST00000520602 RBM42Q9BTD8 480 aaKnown RBP12.41□□□□□ -0.42
MCF2-209ENST00000520602 PHAXQ9H814 394 aaKnown RBP12.41□□□□□ -0.42
MCF2-209ENST00000520602 CHPF2Q9P2E5 772 aa12.41□□□□□ -0.42
MCF2-209ENST00000520602 DDX54Q8TDD1 881 aaKnown RBP12.41□□□□□ -0.42
MCF2-209ENST00000520602 PRDM11Q9NQV5 511 aa12.41□□□□□ -0.42
MCF2-209ENST00000520602 DDX49Q9Y6V7 483 aaKnown RBP12.41□□□□□ -0.42
MCF2-209ENST00000520602 ZC3H13Q5T200 1668 aaKnown RBP12.4□□□□□ -0.42
MCF2-209ENST00000520602 HSP90AB4PQ58FF6 505 aa12.4□□□□□ -0.42
MCF2-209ENST00000520602 RABEP1Q15276 862 aa12.4□□□□□ -0.42
MCF2-209ENST00000520602 TTC22Q5TAA0 569 aa12.4□□□□□ -0.42
MCF2-209ENST00000520602 TOM1L2Q6ZVM7 507 aa12.4□□□□□ -0.42
MCF2-209ENST00000520602 DNAAF4Q8WXU2 420 aa12.4□□□□□ -0.42
MCF2-209ENST00000520602 MSH6P52701 1360 aa12.4□□□□□ -0.42
MCF2-209ENST00000520602 K7ELQ4 463 aaPredicted RBP12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms