RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 ZCRB1Q8TBF4 217 aaKnown RBP40.83■■■■■ 4.13
SYNPO-203ENST00000518872 POLKQ9UBT6 870 aa40.83■■■■■ 4.13
SYNPO-203ENST00000518872 PROM2Q8N271 834 aa40.82■■■■■ 4.13
SYNPO-203ENST00000518872 ACSBG1Q96GR2 724 aa40.81■■■■■ 4.12
SYNPO-203ENST00000518872 KIF7Q2M1P5 1343 aa40.81■■■■■ 4.12
SYNPO-203ENST00000518872 DDX54Q8TDD1 881 aaKnown RBP40.8■■■■■ 4.12
SYNPO-203ENST00000518872 RAPGEF4Q8WZA2 1011 aa40.8■■■■■ 4.12
SYNPO-203ENST00000518872 USHBP1Q8N6Y0 703 aa40.79■■■■■ 4.12
SYNPO-203ENST00000518872 TXNRD1Q16881 649 aa40.76■■■■■ 4.12
SYNPO-203ENST00000518872 DOT1LQ8TEK3 1739 aa40.76■■■■■ 4.11
SYNPO-203ENST00000518872 PPM1GO15355 546 aaPredicted RBP40.75■■■■■ 4.11
SYNPO-203ENST00000518872 TATP17735 454 aaPredicted RBP40.75■■■■■ 4.11
SYNPO-203ENST00000518872 PKD1L3Q7Z443 1732 aa40.73■■■■■ 4.11
SYNPO-203ENST00000518872 KNSTRNQ9Y448 316 aa40.72■■■■■ 4.11
SYNPO-203ENST00000518872 ANO8Q9HCE9 1232 aaPredicted RBP40.7■■■■■ 4.11
SYNPO-203ENST00000518872 PCDH11XQ9BZA7 1347 aa40.67■■■■■ 4.1
SYNPO-203ENST00000518872 PCDH11YQ9BZA8 1340 aa40.67■■■■■ 4.1
SYNPO-203ENST00000518872 TNNT2P45379 298 aaPredicted RBP40.67■■■■■ 4.1
SYNPO-203ENST00000518872 EYA1Q99502 592 aa40.66■■■■■ 4.1
SYNPO-203ENST00000518872 PAPPAQ13219 1627 aa40.66■■■■■ 4.1
SYNPO-203ENST00000518872 CASZ1Q86V15 1759 aa40.65■■■■■ 4.1
SYNPO-203ENST00000518872 PLEKHG2Q9H7P9 1386 aa40.64■■■■■ 4.1
SYNPO-203ENST00000518872 AMER1Q5JTC6 1135 aaPredicted RBP40.64■■■■■ 4.1
SYNPO-203ENST00000518872 MORC1Q86VD1 984 aa40.64■■■■■ 4.1
SYNPO-203ENST00000518872 PRIM1P49642 420 aaKnown RBP40.62■■■■■ 4.09
SYNPO-203ENST00000518872 EIF4A2Q14240 407 aaKnown RBP40.62■■■■■ 4.09
SYNPO-203ENST00000518872 LY75O60449 1722 aa40.61■■■■■ 4.09
SYNPO-203ENST00000518872 PER1O15534 1290 aaPredicted RBP40.59■■■■■ 4.09
SYNPO-203ENST00000518872 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP40.59■■■■■ 4.09
SYNPO-203ENST00000518872 STK32BQ9NY57 414 aa40.58■■■■■ 4.09
SYNPO-203ENST00000518872 CYP27B1O15528 508 aa40.57■■■■■ 4.09
SYNPO-203ENST00000518872 SLC15A2Q16348 729 aa40.57■■■■■ 4.09
SYNPO-203ENST00000518872 SYTL4Q96C24 671 aaPredicted RBP40.56■■■■■ 4.08
SYNPO-203ENST00000518872 SLC27A3Q5K4L6 730 aa40.55■■■■■ 4.08
SYNPO-203ENST00000518872 IGSF1Q8N6C5 1336 aa40.55■■■■■ 4.08
SYNPO-203ENST00000518872 SPG7Q9UQ90 795 aa40.53■■■■■ 4.08
SYNPO-203ENST00000518872 LRRC4BQ9NT99 713 aa40.52■■■■■ 4.08
SYNPO-203ENST00000518872 TOGARAM1Q9Y4F4 1720 aa40.52■■■■■ 4.08
SYNPO-203ENST00000518872 NKX1-1Q15270 411 aaPredicted RBP40.51■■■■■ 4.08
SYNPO-203ENST00000518872 SPON1Q9HCB6 807 aa40.51■■■■■ 4.08
SYNPO-203ENST00000518872 ITGB4P16144 1822 aa40.51■■■■■ 4.07
SYNPO-203ENST00000518872 NPC1L1Q9UHC9 1359 aa40.49■■■■■ 4.07
SYNPO-203ENST00000518872 QSER1Q2KHR3 1735 aa40.47■■■■■ 4.07
SYNPO-203ENST00000518872 PDGFDQ9GZP0 370 aaPredicted RBP40.42■■■■■ 4.06
SYNPO-203ENST00000518872 IFNL2Q8IZJ0 200 aa40.4■■■■■ 4.06
SYNPO-203ENST00000518872 AKT1S1Q96B36 256 aa40.4■■■■■ 4.06
SYNPO-203ENST00000518872 ZNF827Q17R98 1081 aa40.39■■■■■ 4.06
SYNPO-203ENST00000518872 PHKG2P15735 406 aa40.38■■■■■ 4.05
SYNPO-203ENST00000518872 KDRP35968 1356 aa40.36■■■■■ 4.05
SYNPO-203ENST00000518872 IL13P35225 146 aa40.36■■■■■ 4.05
SYNPO-203ENST00000518872 MPRIPQ6WCQ1 1025 aa40.35■■■■■ 4.05
SYNPO-203ENST00000518872 CCNL1Q9UK58 526 aaPredicted RBP40.35■■■■■ 4.05
SYNPO-203ENST00000518872 TUBGCP6Q96RT7 1819 aa40.35■■■■■ 4.05
SYNPO-203ENST00000518872 HMGB2P26583 209 aaKnown RBP40.33■■■■■ 4.05
SYNPO-203ENST00000518872 MTHFSP49914 203 aa40.33■■■■■ 4.05
SYNPO-203ENST00000518872 CC2D1BQ5T0F9 858 aaKnown RBP40.33■■■■■ 4.05
SYNPO-203ENST00000518872 MTFR1LQ9H019 292 aa40.32■■■■■ 4.05
SYNPO-203ENST00000518872 TAF1LQ8IZX4 1826 aa40.32■■■■■ 4.04
SYNPO-203ENST00000518872 PALLDQ8WX93 1383 aa40.32■■■■■ 4.04
SYNPO-203ENST00000518872 ZBTB7AO95365 584 aa40.31■■■■■ 4.04
SYNPO-203ENST00000518872 AMOTQ4VCS5 1084 aa40.31■■■■■ 4.04
SYNPO-203ENST00000518872 SMARCC1Q92922 1105 aaPredicted RBP40.31■■■■■ 4.04
SYNPO-203ENST00000518872 C5P01031 1676 aa40.31■■■■■ 4.04
SYNPO-203ENST00000518872 PLEKHO1Q53GL0 409 aaPredicted RBP40.3■■■■■ 4.04
SYNPO-203ENST00000518872 PTGER2P43116 358 aa40.29■■■■■ 4.04
SYNPO-203ENST00000518872 KCNQ4P56696 695 aa40.29■■■■■ 4.04
SYNPO-203ENST00000518872 PIGBQ92521 554 aa40.29■■■■■ 4.04
SYNPO-203ENST00000518872 AEBP1Q8IUX7 1158 aa40.28■■■■■ 4.04
SYNPO-203ENST00000518872 PPP1R1BQ9UD71 204 aaPredicted RBP40.28■■■■■ 4.04
SYNPO-203ENST00000518872 SULT6B1Q6IMI4 303 aa40.26■■■■■ 4.04
SYNPO-203ENST00000518872 COL24A1Q17RW2 1714 aa40.25■■■■■ 4.03
SYNPO-203ENST00000518872 HSP90AB1P08238 724 aaKnown RBP40.25■■■■■ 4.03
SYNPO-203ENST00000518872 PNPLA7Q6ZV29 1317 aa40.24■■■■■ 4.03
SYNPO-203ENST00000518872 SLC16A10Q8TF71 515 aa40.24■■■■■ 4.03
SYNPO-203ENST00000518872 SGIP1Q9BQI5 828 aa40.24■■■■■ 4.03
SYNPO-203ENST00000518872 TMOD3Q9NYL9 352 aa40.24■■■■■ 4.03
SYNPO-203ENST00000518872 DCAF5Q96JK2 942 aa40.22■■■■■ 4.03
SYNPO-203ENST00000518872 TFCP2L1Q9NZI6 479 aa40.22■■■■■ 4.03
SYNPO-203ENST00000518872 ATF5Q9Y2D1 282 aaPredicted RBP40.22■■■■■ 4.03
SYNPO-203ENST00000518872 ERVV-2B6SEH9 535 aa40.2■■■■■ 4.03
SYNPO-203ENST00000518872 ZNF530Q6P9A1 599 aaPredicted RBP40.2■■■■■ 4.03
SYNPO-203ENST00000518872 COL3A1P02461 1466 aaPredicted RBP40.19■■■■■ 4.02
SYNPO-203ENST00000518872 KDM6AO15550 1401 aaPredicted RBP40.17■■■■■ 4.02
SYNPO-203ENST00000518872 DIAPH1O60610 1272 aaKnown RBP40.17■■■■■ 4.02
SYNPO-203ENST00000518872 C4BP0C0L5 1744 aa40.16■■■■■ 4.02
SYNPO-203ENST00000518872 ZNF831Q5JPB2 1677 aa40.13■■■■■ 4.01
SYNPO-203ENST00000518872 LOC102724428A0A0B4J2F2 783 aa40.12■■■■■ 4.01
SYNPO-203ENST00000518872 SIK1P57059 783 aa40.12■■■■■ 4.01
SYNPO-203ENST00000518872 C1orf141Q5JVX7 400 aa40.12■■■■■ 4.01
SYNPO-203ENST00000518872 ASAP1Q9ULH1 1129 aa40.12■■■■■ 4.01
SYNPO-203ENST00000518872 SCN11AQ9UI33 1791 aa40.12■■■■■ 4.01
SYNPO-203ENST00000518872 UBR3Q6ZT12 1888 aa40.09■■■■■ 4.01
SYNPO-203ENST00000518872 ATG3Q9NT62 314 aa40.09■■■■■ 4.01
SYNPO-203ENST00000518872 FLAD1Q8NFF5 587 aa40.07■■■■■ 4.01
SYNPO-203ENST00000518872 HMOX1P09601 288 aa40.05■■■■■ 4
SYNPO-203ENST00000518872 COL23A1Q86Y22 540 aaPredicted RBP40.05■■■■■ 4
SYNPO-203ENST00000518872 MAP3K5Q99683 1374 aa40.05■■■■■ 4
SYNPO-203ENST00000518872 AKAP4Q5JQC9 854 aa40.04■■■■■ 4
SYNPO-203ENST00000518872 ARXQ96QS3 562 aa40.04■■■■■ 4
SYNPO-203ENST00000518872 VIRMAQ69YN4 1812 aaKnown RBP40.04■■■■■ 4
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms