RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 KTN1Q86UP2 1357 aaKnown RBP16.03■□□□□ 0.16
LIMCH1-221ENST00000515785 WWC3Q9ULE0 1092 aa16.03■□□□□ 0.16
LIMCH1-221ENST00000515785 LTV1Q96GA3 475 aaPredicted RBP16.02■□□□□ 0.16
LIMCH1-221ENST00000515785 CCNL1Q9UK58 526 aaPredicted RBP16.01■□□□□ 0.15
LIMCH1-221ENST00000515785 LTN1O94822 1766 aa16■□□□□ 0.15
LIMCH1-221ENST00000515785 NME9Q86XW9 330 aa16■□□□□ 0.15
LIMCH1-221ENST00000515785 CD2APQ9Y5K6 639 aa15.97■□□□□ 0.15
LIMCH1-221ENST00000515785 LY75O60449 1722 aa15.97■□□□□ 0.15
LIMCH1-221ENST00000515785 DOT1LQ8TEK3 1739 aa15.96■□□□□ 0.15
LIMCH1-221ENST00000515785 ADCY9O60503 1353 aa15.95■□□□□ 0.14
LIMCH1-221ENST00000515785 ANKRD36BQ8N2N9 1353 aa15.95■□□□□ 0.14
LIMCH1-221ENST00000515785 KIF3CO14782 793 aa15.94■□□□□ 0.14
LIMCH1-221ENST00000515785 CAPN15O75808 1086 aa15.94■□□□□ 0.14
LIMCH1-221ENST00000515785 NSD2O96028 1365 aa15.94■□□□□ 0.14
LIMCH1-221ENST00000515785 USP31Q70CQ4 1352 aa15.94■□□□□ 0.14
LIMCH1-221ENST00000515785 ZCRB1Q8TBF4 217 aaKnown RBP15.93■□□□□ 0.14
LIMCH1-221ENST00000515785 TMC1Q8TDI8 760 aa15.93■□□□□ 0.14
LIMCH1-221ENST00000515785 MON2Q7Z3U7 1717 aa15.93■□□□□ 0.14
LIMCH1-221ENST00000515785 USP47Q96K76 1375 aa15.92■□□□□ 0.14
LIMCH1-221ENST00000515785 APLP1P51693 650 aa15.92■□□□□ 0.14
LIMCH1-221ENST00000515785 SMIM5Q71RC9 77 aa15.92■□□□□ 0.14
LIMCH1-221ENST00000515785 IP6K1Q92551 441 aa15.92■□□□□ 0.14
LIMCH1-221ENST00000515785 IGSF1Q8N6C5 1336 aa15.92■□□□□ 0.14
LIMCH1-221ENST00000515785 DNAJC5GQ8N7S2 189 aa15.91■□□□□ 0.14
LIMCH1-221ENST00000515785 L3MBTL2Q969R5 705 aa15.9■□□□□ 0.14
LIMCH1-221ENST00000515785 RGPD2P0DJD1 1756 aa15.9■□□□□ 0.14
LIMCH1-221ENST00000515785 SBNO2Q9Y2G9 1366 aa15.89■□□□□ 0.13
LIMCH1-221ENST00000515785 FBLN1P23142 703 aa15.89■□□□□ 0.13
LIMCH1-221ENST00000515785 HDGFL2Q7Z4V5 671 aaPredicted RBP15.88■□□□□ 0.13
LIMCH1-221ENST00000515785 FLAD1Q8NFF5 587 aa15.88■□□□□ 0.13
LIMCH1-221ENST00000515785 SLC12A5Q9H2X9 1139 aa15.88■□□□□ 0.13
LIMCH1-221ENST00000515785 C5P01031 1676 aa15.87■□□□□ 0.13
LIMCH1-221ENST00000515785 USP54Q70EL1 1684 aa15.87■□□□□ 0.13
LIMCH1-221ENST00000515785 PHF14O94880 888 aa15.87■□□□□ 0.13
LIMCH1-221ENST00000515785 COL13A1Q5TAT6 717 aaPredicted RBP15.87■□□□□ 0.13
LIMCH1-221ENST00000515785 AMPHP49418 695 aa15.86■□□□□ 0.13
LIMCH1-221ENST00000515785 HTRA3P83110 453 aa15.86■□□□□ 0.13
LIMCH1-221ENST00000515785 AMIGO3Q86WK7 504 aa15.86■□□□□ 0.13
LIMCH1-221ENST00000515785 ROCK2O75116 1388 aaKnown RBP15.86■□□□□ 0.13
LIMCH1-221ENST00000515785 CD163L1Q9NR16 1453 aa15.85■□□□□ 0.13
LIMCH1-221ENST00000515785 TOMM70O94826 608 aa15.85■□□□□ 0.13
LIMCH1-221ENST00000515785 MPRIPQ6WCQ1 1025 aa15.85■□□□□ 0.13
LIMCH1-221ENST00000515785 USHBP1Q8N6Y0 703 aa15.85■□□□□ 0.13
LIMCH1-221ENST00000515785 MEGF6O75095 1541 aa15.84■□□□□ 0.13
LIMCH1-221ENST00000515785 FAM208AQ9UK61 1670 aaKnown RBP15.84■□□□□ 0.13
LIMCH1-221ENST00000515785 AK7Q96M32 723 aa15.84■□□□□ 0.13
LIMCH1-221ENST00000515785 TAF1LQ8IZX4 1826 aa15.84■□□□□ 0.13
LIMCH1-221ENST00000515785 HOXC9P31274 260 aa15.83■□□□□ 0.12
LIMCH1-221ENST00000515785 NMRK2Q9NPI5 230 aa15.83■□□□□ 0.12
LIMCH1-221ENST00000515785 NBPF6Q5VWK0 638 aa15.82■□□□□ 0.12
LIMCH1-221ENST00000515785 NBPF4Q96M43 638 aa15.82■□□□□ 0.12
LIMCH1-221ENST00000515785 MAP3K19Q56UN5 1328 aa15.82■□□□□ 0.12
LIMCH1-221ENST00000515785 PALLDQ8WX93 1383 aa15.82■□□□□ 0.12
LIMCH1-221ENST00000515785 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.81■□□□□ 0.12
LIMCH1-221ENST00000515785 EDC4Q6P2E9 1401 aaKnown RBP15.81■□□□□ 0.12
LIMCH1-221ENST00000515785 ARHGAP27Q6ZUM4 889 aa15.81■□□□□ 0.12
LIMCH1-221ENST00000515785 TERF2IPQ9NYB0 399 aa15.81■□□□□ 0.12
LIMCH1-221ENST00000515785 NEUROD1Q13562 356 aa15.8■□□□□ 0.12
LIMCH1-221ENST00000515785 RAPGEF4Q8WZA2 1011 aa15.8■□□□□ 0.12
LIMCH1-221ENST00000515785 SIN3AQ96ST3 1273 aa15.8■□□□□ 0.12
LIMCH1-221ENST00000515785 BCS1LQ9Y276 419 aa15.8■□□□□ 0.12
LIMCH1-221ENST00000515785 C4BP0C0L5 1744 aa15.8■□□□□ 0.12
LIMCH1-221ENST00000515785 A0A0G2JLW4 131 aa15.79■□□□□ 0.12
LIMCH1-221ENST00000515785 TATP17735 454 aaPredicted RBP15.79■□□□□ 0.12
LIMCH1-221ENST00000515785 TNS4Q8IZW8 715 aa15.79■□□□□ 0.12
LIMCH1-221ENST00000515785 COG3Q96JB2 828 aa15.79■□□□□ 0.12
LIMCH1-221ENST00000515785 A0A1W2PP64 1363 aa15.78■□□□□ 0.12
LIMCH1-221ENST00000515785 WDR90Q96KV7 1748 aa15.78■□□□□ 0.12
LIMCH1-221ENST00000515785 HMGB2P26583 209 aaKnown RBP15.78■□□□□ 0.12
LIMCH1-221ENST00000515785 C16orf71Q8IYS4 520 aaPredicted RBP15.78■□□□□ 0.12
LIMCH1-221ENST00000515785 KLRG1Q96E93 195 aa15.78■□□□□ 0.12
LIMCH1-221ENST00000515785 UBR3Q6ZT12 1888 aa15.78■□□□□ 0.12
LIMCH1-221ENST00000515785 N4BP2Q86UW6 1770 aaPredicted RBP15.77■□□□□ 0.12
LIMCH1-221ENST00000515785 TOGARAM1Q9Y4F4 1720 aa15.77■□□□□ 0.12
LIMCH1-221ENST00000515785 RRS1Q15050 365 aaKnown RBP15.77■□□□□ 0.12
LIMCH1-221ENST00000515785 PPP4R3CPQ6ZMV5 832 aa15.77■□□□□ 0.12
LIMCH1-221ENST00000515785 MMP10P09238 476 aa15.76■□□□□ 0.11
LIMCH1-221ENST00000515785 SMARCC1Q92922 1105 aaPredicted RBP15.76■□□□□ 0.11
LIMCH1-221ENST00000515785 ITGB4P16144 1822 aa15.75■□□□□ 0.11
LIMCH1-221ENST00000515785 LINC00116Q8NCU8 138 aa15.75■□□□□ 0.11
LIMCH1-221ENST00000515785 RBM46Q8TBY0 533 aaKnown RBP15.75■□□□□ 0.11
LIMCH1-221ENST00000515785 CGNL1Q0VF96 1302 aa15.74■□□□□ 0.11
LIMCH1-221ENST00000515785 GNPATO15228 680 aa15.74■□□□□ 0.11
LIMCH1-221ENST00000515785 FCHSD2O94868 740 aa15.74■□□□□ 0.11
LIMCH1-221ENST00000515785 SSFA2P28290 1259 aa15.74■□□□□ 0.11
LIMCH1-221ENST00000515785 PRELPP51888 382 aa15.74■□□□□ 0.11
LIMCH1-221ENST00000515785 JMYQ8N9B5 988 aa15.74■□□□□ 0.11
LIMCH1-221ENST00000515785 PIGBQ92521 554 aa15.74■□□□□ 0.11
LIMCH1-221ENST00000515785 PCDH11XQ9BZA7 1347 aa15.73■□□□□ 0.11
LIMCH1-221ENST00000515785 PCDH11YQ9BZA8 1340 aa15.73■□□□□ 0.11
LIMCH1-221ENST00000515785 CICQ96RK0 1608 aaPredicted RBP15.73■□□□□ 0.11
LIMCH1-221ENST00000515785 CYP27B1O15528 508 aa15.73■□□□□ 0.11
LIMCH1-221ENST00000515785 C9orf131Q5VYM1 1079 aa15.73■□□□□ 0.11
LIMCH1-221ENST00000515785 CARD11Q9BXL7 1154 aa15.73■□□□□ 0.11
LIMCH1-221ENST00000515785 PXDNLA1KZ92 1463 aa15.72■□□□□ 0.11
LIMCH1-221ENST00000515785 DPEP1P16444 411 aa15.72■□□□□ 0.11
LIMCH1-221ENST00000515785 RRAGCQ9HB90 399 aa15.72■□□□□ 0.11
LIMCH1-221ENST00000515785 LOC102724428A0A0B4J2F2 783 aa15.71■□□□□ 0.11
LIMCH1-221ENST00000515785 SIK1P57059 783 aa15.71■□□□□ 0.11
LIMCH1-221ENST00000515785 TGFB2P61812 414 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms