RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 RGPD3A6NKT7 1758 aaPredicted RBP18.78■□□□□ 0.6
TCOF1-215ENST00000515516 RGPD4Q7Z3J3 1758 aa18.78■□□□□ 0.6
TCOF1-215ENST00000515516 PRIM1P49642 420 aaKnown RBP18.78■□□□□ 0.6
TCOF1-215ENST00000515516 TNNT2P45379 298 aaPredicted RBP18.77■□□□□ 0.6
TCOF1-215ENST00000515516 MEGF6O75095 1541 aa18.76■□□□□ 0.59
TCOF1-215ENST00000515516 KIF20BQ96Q89 1820 aa18.76■□□□□ 0.59
TCOF1-215ENST00000515516 MYOM1P52179 1685 aa18.76■□□□□ 0.59
TCOF1-215ENST00000515516 WASHC2AQ641Q2 1341 aa18.75■□□□□ 0.59
TCOF1-215ENST00000515516 SLC27A3Q5K4L6 730 aa18.75■□□□□ 0.59
TCOF1-215ENST00000515516 NHSQ6T4R5 1651 aa18.75■□□□□ 0.59
TCOF1-215ENST00000515516 PCDH11XQ9BZA7 1347 aa18.74■□□□□ 0.59
TCOF1-215ENST00000515516 PCDH11YQ9BZA8 1340 aa18.74■□□□□ 0.59
TCOF1-215ENST00000515516 POLKQ9UBT6 870 aa18.74■□□□□ 0.59
TCOF1-215ENST00000515516 ZBTB7AO95365 584 aa18.73■□□□□ 0.59
TCOF1-215ENST00000515516 KNSTRNQ9Y448 316 aa18.73■□□□□ 0.59
TCOF1-215ENST00000515516 MORC1Q86VD1 984 aa18.72■□□□□ 0.59
TCOF1-215ENST00000515516 SPG7Q9UQ90 795 aa18.72■□□□□ 0.59
TCOF1-215ENST00000515516 DCAF8L1A6NGE4 600 aa18.71■□□□□ 0.59
TCOF1-215ENST00000515516 PDGFDQ9GZP0 370 aaPredicted RBP18.71■□□□□ 0.59
TCOF1-215ENST00000515516 ATF5Q9Y2D1 282 aaPredicted RBP18.71■□□□□ 0.59
TCOF1-215ENST00000515516 NSD2O96028 1365 aa18.7■□□□□ 0.58
TCOF1-215ENST00000515516 EYA1Q99502 592 aa18.7■□□□□ 0.58
TCOF1-215ENST00000515516 LRRC4BQ9NT99 713 aa18.7■□□□□ 0.58
TCOF1-215ENST00000515516 MTFR1LQ9H019 292 aa18.69■□□□□ 0.58
TCOF1-215ENST00000515516 HMGB2P26583 209 aaKnown RBP18.68■□□□□ 0.58
TCOF1-215ENST00000515516 CCNL1Q9UK58 526 aaPredicted RBP18.68■□□□□ 0.58
TCOF1-215ENST00000515516 CYP27B1O15528 508 aa18.67■□□□□ 0.58
TCOF1-215ENST00000515516 EIF4A2Q14240 407 aaKnown RBP18.67■□□□□ 0.58
TCOF1-215ENST00000515516 ZNF827Q17R98 1081 aa18.67■□□□□ 0.58
TCOF1-215ENST00000515516 MPRIPQ6WCQ1 1025 aa18.67■□□□□ 0.58
TCOF1-215ENST00000515516 TFCP2L1Q9NZI6 479 aa18.67■□□□□ 0.58
TCOF1-215ENST00000515516 AKT1S1Q96B36 256 aa18.66■□□□□ 0.58
TCOF1-215ENST00000515516 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.66■□□□□ 0.582e-7■■■■■ 35.6
TCOF1-215ENST00000515516 RGPD2P0DJD1 1756 aa18.65■□□□□ 0.58
TCOF1-215ENST00000515516 BTAF1O14981 1849 aa18.65■□□□□ 0.58
TCOF1-215ENST00000515516 KCNQ4P56696 695 aa18.65■□□□□ 0.58
TCOF1-215ENST00000515516 KIF7Q2M1P5 1343 aa18.65■□□□□ 0.58
TCOF1-215ENST00000515516 PTGER2P43116 358 aa18.64■□□□□ 0.57
TCOF1-215ENST00000515516 IFNL2Q8IZJ0 200 aa18.63■□□□□ 0.57
TCOF1-215ENST00000515516 SMARCC1Q92922 1105 aaPredicted RBP18.63■□□□□ 0.57
TCOF1-215ENST00000515516 NKX1-1Q15270 411 aaPredicted RBP18.62■□□□□ 0.57
TCOF1-215ENST00000515516 SLC16A10Q8TF71 515 aa18.62■□□□□ 0.57
TCOF1-215ENST00000515516 NCAPD2Q15021 1401 aa18.62■□□□□ 0.57
TCOF1-215ENST00000515516 KAT6BQ8WYB5 2073 aa18.62■□□□□ 0.57
TCOF1-215ENST00000515516 MSH5O43196 834 aa18.61■□□□□ 0.57
TCOF1-215ENST00000515516 CASZ1Q86V15 1759 aa18.6■□□□□ 0.57
TCOF1-215ENST00000515516 POLD1P28340 1107 aa18.6■□□□□ 0.57
TCOF1-215ENST00000515516 PLEKHO1Q53GL0 409 aaPredicted RBP18.6■□□□□ 0.57
TCOF1-215ENST00000515516 ARXQ96QS3 562 aa18.6■□□□□ 0.57
TCOF1-215ENST00000515516 TMOD3Q9NYL9 352 aa18.6■□□□□ 0.57
TCOF1-215ENST00000515516 DOT1LQ8TEK3 1739 aa18.6■□□□□ 0.57
TCOF1-215ENST00000515516 PALLDQ8WX93 1383 aa18.59■□□□□ 0.57
TCOF1-215ENST00000515516 IGSF1Q8N6C5 1336 aa18.59■□□□□ 0.57
TCOF1-215ENST00000515516 PHKG2P15735 406 aa18.59■□□□□ 0.57
TCOF1-215ENST00000515516 PIGBQ92521 554 aa18.59■□□□□ 0.57
TCOF1-215ENST00000515516 PAPPAQ13219 1627 aa18.59■□□□□ 0.57
TCOF1-215ENST00000515516 SHANK3Q9BYB0 1731 aa18.58■□□□□ 0.57
TCOF1-215ENST00000515516 PNPLA7Q6ZV29 1317 aa18.58■□□□□ 0.57
TCOF1-215ENST00000515516 AMER1Q5JTC6 1135 aaPredicted RBP18.58■□□□□ 0.56
TCOF1-215ENST00000515516 ANKRD26Q9UPS8 1709 aa18.57■□□□□ 0.56
TCOF1-215ENST00000515516 HSP90AB1P08238 724 aaKnown RBP18.57■□□□□ 0.56
TCOF1-215ENST00000515516 AMOTQ4VCS5 1084 aa18.57■□□□□ 0.56
TCOF1-215ENST00000515516 FHDC1Q9C0D6 1143 aaPredicted RBP18.57■□□□□ 0.56
TCOF1-215ENST00000515516 PLEKHG2Q9H7P9 1386 aa18.56■□□□□ 0.56
TCOF1-215ENST00000515516 MAP2P11137 1827 aaKnown RBP18.56■□□□□ 0.56
TCOF1-215ENST00000515516 SGIP1Q9BQI5 828 aa18.56■□□□□ 0.56
TCOF1-215ENST00000515516 FLAD1Q8NFF5 587 aa18.55■□□□□ 0.56
TCOF1-215ENST00000515516 SYT17Q9BSW7 474 aa18.55■□□□□ 0.56
TCOF1-215ENST00000515516 CC2D1BQ5T0F9 858 aaKnown RBP18.54■□□□□ 0.56
TCOF1-215ENST00000515516 SULT6B1Q6IMI4 303 aa18.54■□□□□ 0.56
TCOF1-215ENST00000515516 ZNF530Q6P9A1 599 aaPredicted RBP18.54■□□□□ 0.56
TCOF1-215ENST00000515516 AK7Q96M32 723 aa18.54■□□□□ 0.56
TCOF1-215ENST00000515516 MTHFSP49914 203 aa18.53■□□□□ 0.56
TCOF1-215ENST00000515516 C1orf141Q5JVX7 400 aa18.53■□□□□ 0.56
TCOF1-215ENST00000515516 KLHL34Q8N239 644 aa18.53■□□□□ 0.56
TCOF1-215ENST00000515516 DCAF5Q96JK2 942 aa18.53■□□□□ 0.56
TCOF1-215ENST00000515516 PKD1L3Q7Z443 1732 aa18.52■□□□□ 0.56
TCOF1-215ENST00000515516 LOC102724428A0A0B4J2F2 783 aa18.52■□□□□ 0.56
TCOF1-215ENST00000515516 ERVV-2B6SEH9 535 aa18.52■□□□□ 0.56
TCOF1-215ENST00000515516 PER1O15534 1290 aaPredicted RBP18.52■□□□□ 0.56
TCOF1-215ENST00000515516 IL13P35225 146 aa18.52■□□□□ 0.56
TCOF1-215ENST00000515516 SIK1P57059 783 aa18.52■□□□□ 0.56
TCOF1-215ENST00000515516 COL23A1Q86Y22 540 aaPredicted RBP18.52■□□□□ 0.56
TCOF1-215ENST00000515516 YY1P25490 414 aa18.51■□□□□ 0.55
TCOF1-215ENST00000515516 CNGB1Q14028 1251 aaPredicted RBP18.51■□□□□ 0.55
TCOF1-215ENST00000515516 AEBP1Q8IUX7 1158 aa18.51■□□□□ 0.55
TCOF1-215ENST00000515516 ASAP1Q9ULH1 1129 aa18.51■□□□□ 0.55
TCOF1-215ENST00000515516 CABP4P57796 275 aa18.5■□□□□ 0.55
TCOF1-215ENST00000515516 LY75O60449 1722 aa18.49■□□□□ 0.55
TCOF1-215ENST00000515516 ATP6V1AP38606 617 aa18.49■□□□□ 0.55
TCOF1-215ENST00000515516 ATG3Q9NT62 314 aa18.49■□□□□ 0.55
TCOF1-215ENST00000515516 MAP3K5Q99683 1374 aa18.47■□□□□ 0.55
TCOF1-215ENST00000515516 DIAPH1O60610 1272 aaKnown RBP18.47■□□□□ 0.55
TCOF1-215ENST00000515516 PHF14O94880 888 aa18.47■□□□□ 0.55
TCOF1-215ENST00000515516 MSL1Q68DK7 614 aa18.47■□□□□ 0.55
TCOF1-215ENST00000515516 RBM42Q9BTD8 480 aaKnown RBP18.47■□□□□ 0.55
TCOF1-215ENST00000515516 LINC00116Q8NCU8 138 aa18.45■□□□□ 0.54
TCOF1-215ENST00000515516 KDRP35968 1356 aa18.44■□□□□ 0.54
TCOF1-215ENST00000515516 NPC1L1Q9UHC9 1359 aa18.44■□□□□ 0.54
TCOF1-215ENST00000515516 TOGARAM1Q9Y4F4 1720 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms