RNA–Protein interactions for RNA: ENST00000514773.1

PCDH1-207, Transcript of protocadherin 1, humanhuman

TSL 4

Gene PCDH1, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-207ENST00000514773 BCL9O00512 1426 aa24.12■■□□□ 1.45
PCDH1-207ENST00000514773 DDX54Q8TDD1 881 aaKnown RBP24.12■■□□□ 1.45
PCDH1-207ENST00000514773 SPG7Q9UQ90 795 aa24.12■■□□□ 1.45
PCDH1-207ENST00000514773 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.11■■□□□ 1.45
PCDH1-207ENST00000514773 NUDCQ9Y266 331 aa24.1■■□□□ 1.45
PCDH1-207ENST00000514773 PCDH11XQ9BZA7 1347 aa24.1■■□□□ 1.45
PCDH1-207ENST00000514773 PCDH11YQ9BZA8 1340 aa24.1■■□□□ 1.45
PCDH1-207ENST00000514773 SULT6B1Q6IMI4 303 aa24.09■■□□□ 1.45
PCDH1-207ENST00000514773 TRIM37O94972 964 aa24.08■■□□□ 1.45
PCDH1-207ENST00000514773 RGPD1P0DJD0 1748 aa24.07■■□□□ 1.44
PCDH1-207ENST00000514773 KDRP35968 1356 aa24.06■■□□□ 1.44
PCDH1-207ENST00000514773 U2SURPO15042 1029 aaKnown RBP24.06■■□□□ 1.44
PCDH1-207ENST00000514773 BAG6P46379 1132 aa24.06■■□□□ 1.44
PCDH1-207ENST00000514773 AMOTQ4VCS5 1084 aa24.06■■□□□ 1.44
PCDH1-207ENST00000514773 COL3A1P02461 1466 aaPredicted RBP24.06■■□□□ 1.44
PCDH1-207ENST00000514773 PLEKHO1Q53GL0 409 aaPredicted RBP24.05■■□□□ 1.44
PCDH1-207ENST00000514773 BCL11BQ9C0K0 894 aaPredicted RBP24.05■■□□□ 1.44
PCDH1-207ENST00000514773 MYBBP1AQ9BQG0 1328 aaKnown RBP24.05■■□□□ 1.44
PCDH1-207ENST00000514773 AEBP1Q8IUX7 1158 aa24.03■■□□□ 1.44
PCDH1-207ENST00000514773 PRKRIP1Q9H875 184 aaPredicted RBP24.03■■□□□ 1.44
PCDH1-207ENST00000514773 PKD1L3Q7Z443 1732 aa24.01■■□□□ 1.43
PCDH1-207ENST00000514773 APBA3O96018 575 aa24.01■■□□□ 1.43
PCDH1-207ENST00000514773 HMOX1P09601 288 aa24.01■■□□□ 1.43
PCDH1-207ENST00000514773 IFNL2Q8IZJ0 200 aa24.01■■□□□ 1.43
PCDH1-207ENST00000514773 CYP27B1O15528 508 aa23.99■■□□□ 1.43
PCDH1-207ENST00000514773 SHANK3Q9BYB0 1731 aa23.98■■□□□ 1.43
PCDH1-207ENST00000514773 SBF2Q86WG5 1849 aa23.98■■□□□ 1.43
PCDH1-207ENST00000514773 HSP90AB1P08238 724 aaKnown RBP23.98■■□□□ 1.43
PCDH1-207ENST00000514773 U2AF1L5P0DN76 240 aaPredicted RBP23.98■■□□□ 1.43
PCDH1-207ENST00000514773 U2AF1Q01081 240 aaKnown RBP eCLIP23.98■■□□□ 1.43
PCDH1-207ENST00000514773 ACSBG1Q96GR2 724 aa23.98■■□□□ 1.43
PCDH1-207ENST00000514773 C1orf141Q5JVX7 400 aa23.97■■□□□ 1.43
PCDH1-207ENST00000514773 KAT6BQ8WYB5 2073 aa23.97■■□□□ 1.43
PCDH1-207ENST00000514773 TNS1Q9HBL0 1735 aaKnown RBP23.96■■□□□ 1.43
PCDH1-207ENST00000514773 ANP32CO43423 234 aa23.96■■□□□ 1.43
PCDH1-207ENST00000514773 PHKG2P15735 406 aa23.96■■□□□ 1.43
PCDH1-207ENST00000514773 NKX1-1Q15270 411 aaPredicted RBP23.96■■□□□ 1.43
PCDH1-207ENST00000514773 DEFB132Q7Z7B7 95 aa23.96■■□□□ 1.43
PCDH1-207ENST00000514773 FCHSD2O94868 740 aa23.95■■□□□ 1.42
PCDH1-207ENST00000514773 ZNF530Q6P9A1 599 aaPredicted RBP23.95■■□□□ 1.42
PCDH1-207ENST00000514773 SYTL4Q96C24 671 aaPredicted RBP23.95■■□□□ 1.42
PCDH1-207ENST00000514773 NHSQ6T4R5 1651 aa23.95■■□□□ 1.42
PCDH1-207ENST00000514773 PLSCR1O15162 318 aa23.94■■□□□ 1.42
PCDH1-207ENST00000514773 KCNQ2O43526 872 aa23.94■■□□□ 1.42
PCDH1-207ENST00000514773 PNNQ9H307 717 aaKnown RBP23.94■■□□□ 1.42
PCDH1-207ENST00000514773 PRIM1P49642 420 aaKnown RBP23.93■■□□□ 1.42
PCDH1-207ENST00000514773 EN1Q05925 392 aaPredicted RBP23.93■■□□□ 1.42
PCDH1-207ENST00000514773 NEFMP07197 916 aa23.92■■□□□ 1.42
PCDH1-207ENST00000514773 DCAF5Q96JK2 942 aa23.92■■□□□ 1.42
PCDH1-207ENST00000514773 CAMKK2Q96RR4 588 aa23.91■■□□□ 1.42
PCDH1-207ENST00000514773 AKAP4Q5JQC9 854 aa23.9■■□□□ 1.42
PCDH1-207ENST00000514773 RSPH6AQ9H0K4 717 aa23.9■■□□□ 1.42
PCDH1-207ENST00000514773 PRKAR2BP31323 418 aa23.89■■□□□ 1.41
PCDH1-207ENST00000514773 PTF1AQ7RTS3 328 aa23.89■■□□□ 1.41
PCDH1-207ENST00000514773 GAS2L2Q8NHY3 880 aa23.89■■□□□ 1.41
PCDH1-207ENST00000514773 DOT1LQ8TEK3 1739 aa23.89■■□□□ 1.41
PCDH1-207ENST00000514773 ERVV-2B6SEH9 535 aa23.87■■□□□ 1.41
PCDH1-207ENST00000514773 EZH2Q15910 746 aaKnown RBP23.87■■□□□ 1.41
PCDH1-207ENST00000514773 RGPD3A6NKT7 1758 aaPredicted RBP23.87■■□□□ 1.41
PCDH1-207ENST00000514773 RGPD4Q7Z3J3 1758 aa23.87■■□□□ 1.41
PCDH1-207ENST00000514773 WDR43Q15061 677 aaKnown RBP eCLIP23.86■■□□□ 1.41
PCDH1-207ENST00000514773 MTHFSDQ2M296 383 aaKnown RBP23.86■■□□□ 1.41
PCDH1-207ENST00000514773 MPRIPQ6WCQ1 1025 aa23.86■■□□□ 1.41
PCDH1-207ENST00000514773 TMOD3Q9NYL9 352 aa23.85■■□□□ 1.41
PCDH1-207ENST00000514773 BTAF1O14981 1849 aa23.84■■□□□ 1.41
PCDH1-207ENST00000514773 HMGB2P26583 209 aaKnown RBP23.84■■□□□ 1.41
PCDH1-207ENST00000514773 SMARCC1Q92922 1105 aaPredicted RBP23.82■■□□□ 1.4
PCDH1-207ENST00000514773 PHACTR3Q96KR7 559 aa23.82■■□□□ 1.4
PCDH1-207ENST00000514773 GNAT3A8MTJ3 354 aa23.81■■□□□ 1.4
PCDH1-207ENST00000514773 CABP4P57796 275 aa23.81■■□□□ 1.4
PCDH1-207ENST00000514773 NBPF14Q5TI25 921 aa23.81■■□□□ 1.4
PCDH1-207ENST00000514773 MAPK8IP3Q9UPT6 1336 aa23.81■■□□□ 1.4
PCDH1-207ENST00000514773 TXNRD1Q16881 649 aa23.8■■□□□ 1.4
PCDH1-207ENST00000514773 SLC27A3Q5K4L6 730 aa23.8■■□□□ 1.4
PCDH1-207ENST00000514773 PIGBQ92521 554 aa23.8■■□□□ 1.4
PCDH1-207ENST00000514773 MAP3K5Q99683 1374 aa23.79■■□□□ 1.4
PCDH1-207ENST00000514773 TOGARAM1Q9Y4F4 1720 aa23.79■■□□□ 1.4
PCDH1-207ENST00000514773 KDM6AO15550 1401 aaPredicted RBP23.78■■□□□ 1.4
PCDH1-207ENST00000514773 ITGB4P16144 1822 aa23.78■■□□□ 1.4
PCDH1-207ENST00000514773 RREB1Q92766 1687 aa23.77■■□□□ 1.4
PCDH1-207ENST00000514773 RNMTO43148 476 aaKnown RBP23.77■■□□□ 1.4
PCDH1-207ENST00000514773 RTF1Q92541 710 aaKnown RBP23.77■■□□□ 1.4
PCDH1-207ENST00000514773 PROM2Q8N271 834 aa23.76■■□□□ 1.39
PCDH1-207ENST00000514773 PLEKHF1Q96S99 279 aa23.76■■□□□ 1.39
PCDH1-207ENST00000514773 HTATSF1O43719 755 aaKnown RBP23.75■■□□□ 1.39
PCDH1-207ENST00000514773 NFATC2IPQ8NCF5 419 aa23.75■■□□□ 1.39
PCDH1-207ENST00000514773 PALLDQ8WX93 1383 aa23.75■■□□□ 1.39
PCDH1-207ENST00000514773 SCN11AQ9UI33 1791 aa23.74■■□□□ 1.39
PCDH1-207ENST00000514773 SLC52A2Q9HAB3 445 aa23.74■■□□□ 1.39
PCDH1-207ENST00000514773 LGR6Q9HBX8 967 aa23.74■■□□□ 1.39
PCDH1-207ENST00000514773 MRS2Q9HD23 443 aa23.73■■□□□ 1.39
PCDH1-207ENST00000514773 CCNL1Q9UK58 526 aaPredicted RBP23.73■■□□□ 1.39
PCDH1-207ENST00000514773 ADAMTS8Q9UP79 889 aa23.73■■□□□ 1.39
PCDH1-207ENST00000514773 TEFQ10587 303 aa23.72■■□□□ 1.39
PCDH1-207ENST00000514773 NUP188Q5SRE5 1749 aa23.72■■□□□ 1.39
PCDH1-207ENST00000514773 NFE2L2Q16236 605 aa23.71■■□□□ 1.39
PCDH1-207ENST00000514773 RUNDC1Q96C34 613 aa23.71■■□□□ 1.39
PCDH1-207ENST00000514773 ASAP1Q9ULH1 1129 aa23.71■■□□□ 1.39
PCDH1-207ENST00000514773 ATG3Q9NT62 314 aa23.7■■□□□ 1.38
PCDH1-207ENST00000514773 STK32BQ9NY57 414 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms