RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 RGPD5Q99666 1765 aa11.18□□□□□ -0.62
CCL28-204ENST00000514421 BAG6P46379 1132 aa11.17□□□□□ -0.62
CCL28-204ENST00000514421 RALBP1Q15311 655 aa11.17□□□□□ -0.62
CCL28-204ENST00000514421 CFAP53Q96M91 514 aa11.17□□□□□ -0.62
CCL28-204ENST00000514421 BCL11BQ9C0K0 894 aaPredicted RBP11.17□□□□□ -0.62
CCL28-204ENST00000514421 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.17□□□□□ -0.62
CCL28-204ENST00000514421 THSD7AQ9UPZ6 1657 aa11.17□□□□□ -0.62
CCL28-204ENST00000514421 MAP2P11137 1827 aaKnown RBP11.16□□□□□ -0.62
CCL28-204ENST00000514421 APBA3O96018 575 aa11.16□□□□□ -0.62
CCL28-204ENST00000514421 DEFB132Q7Z7B7 95 aa11.16□□□□□ -0.62
CCL28-204ENST00000514421 SPG7Q9UQ90 795 aa11.16□□□□□ -0.62
CCL28-204ENST00000514421 IGSF1Q8N6C5 1336 aa11.15□□□□□ -0.62
CCL28-204ENST00000514421 PLEKHO1Q53GL0 409 aaPredicted RBP11.15□□□□□ -0.62
CCL28-204ENST00000514421 SULT6B1Q6IMI4 303 aa11.15□□□□□ -0.62
CCL28-204ENST00000514421 NUDCQ9Y266 331 aa11.15□□□□□ -0.62
CCL28-204ENST00000514421 OVOS2A0A0G2JMS6 1433 aa11.15□□□□□ -0.62
CCL28-204ENST00000514421 BCL9O00512 1426 aa11.15□□□□□ -0.62
CCL28-204ENST00000514421 PEAK1Q9H792 1746 aa11.15□□□□□ -0.63
CCL28-204ENST00000514421 EN1Q05925 392 aaPredicted RBP11.14□□□□□ -0.63
CCL28-204ENST00000514421 AMOTQ4VCS5 1084 aa11.14□□□□□ -0.63
CCL28-204ENST00000514421 BRWD3Q6RI45 1802 aa11.14□□□□□ -0.63
CCL28-204ENST00000514421 TNS2Q63HR2 1409 aa11.13□□□□□ -0.63
CCL28-204ENST00000514421 PLSCR1O15162 318 aa11.13□□□□□ -0.63
CCL28-204ENST00000514421 KCNQ2O43526 872 aa11.13□□□□□ -0.63
CCL28-204ENST00000514421 AEBP1Q8IUX7 1158 aa11.13□□□□□ -0.63
CCL28-204ENST00000514421 IFNL2Q8IZJ0 200 aa11.13□□□□□ -0.63
CCL28-204ENST00000514421 ACSBG1Q96GR2 724 aa11.13□□□□□ -0.63
CCL28-204ENST00000514421 PCDH11XQ9BZA7 1347 aa11.12□□□□□ -0.63
CCL28-204ENST00000514421 PCDH11YQ9BZA8 1340 aa11.12□□□□□ -0.63
CCL28-204ENST00000514421 NCAPD2Q15021 1401 aa11.12□□□□□ -0.63
CCL28-204ENST00000514421 U2SURPO15042 1029 aaKnown RBP11.12□□□□□ -0.63
CCL28-204ENST00000514421 CYP27B1O15528 508 aa11.12□□□□□ -0.63
CCL28-204ENST00000514421 NKX1-1Q15270 411 aaPredicted RBP11.12□□□□□ -0.63
CCL28-204ENST00000514421 PTF1AQ7RTS3 328 aa11.12□□□□□ -0.63
CCL28-204ENST00000514421 CAMKK2Q96RR4 588 aa11.12□□□□□ -0.63
CCL28-204ENST00000514421 PRKRIP1Q9H875 184 aaPredicted RBP11.12□□□□□ -0.63
CCL28-204ENST00000514421 MEGF6O75095 1541 aa11.12□□□□□ -0.63
CCL28-204ENST00000514421 PARD3Q8TEW0 1356 aa11.12□□□□□ -0.63
CCL28-204ENST00000514421 ANKRD26Q9UPS8 1709 aa11.12□□□□□ -0.63
CCL28-204ENST00000514421 HMOX1P09601 288 aa11.11□□□□□ -0.63
CCL28-204ENST00000514421 PRIM1P49642 420 aaKnown RBP11.11□□□□□ -0.63
CCL28-204ENST00000514421 PARP4Q9UKK3 1724 aaKnown RBP11.11□□□□□ -0.63
CCL28-204ENST00000514421 EP400Q96L91 3159 aa11.1□□□□□ -0.63
CCL28-204ENST00000514421 PHKG2P15735 406 aa11.1□□□□□ -0.63
CCL28-204ENST00000514421 EZH2Q15910 746 aaKnown RBP11.1□□□□□ -0.63
CCL28-204ENST00000514421 PLEKHG2Q9H7P9 1386 aa11.1□□□□□ -0.63
CCL28-204ENST00000514421 KDRP35968 1356 aa11.09□□□□□ -0.63
CCL28-204ENST00000514421 FCHSD2O94868 740 aa11.09□□□□□ -0.63
CCL28-204ENST00000514421 HSP90AB1P08238 724 aaKnown RBP11.09□□□□□ -0.63
CCL28-204ENST00000514421 U2AF1L5P0DN76 240 aaPredicted RBP11.09□□□□□ -0.63
CCL28-204ENST00000514421 U2AF1Q01081 240 aaKnown RBP eCLIP11.09□□□□□ -0.63
CCL28-204ENST00000514421 ZNF530Q6P9A1 599 aaPredicted RBP11.09□□□□□ -0.63
CCL28-204ENST00000514421 SYTL4Q96C24 671 aaPredicted RBP11.09□□□□□ -0.63
CCL28-204ENST00000514421 KAT6BQ8WYB5 2073 aa11.08□□□□□ -0.63
CCL28-204ENST00000514421 FAM208AQ9UK61 1670 aaKnown RBP11.08□□□□□ -0.64
CCL28-204ENST00000514421 C1orf141Q5JVX7 400 aa11.08□□□□□ -0.64
CCL28-204ENST00000514421 YTHDC1Q96MU7 727 aaKnown RBP11.08□□□□□ -0.64
CCL28-204ENST00000514421 MYBBP1AQ9BQG0 1328 aaKnown RBP11.08□□□□□ -0.64
CCL28-204ENST00000514421 ERVV-2B6SEH9 535 aa11.07□□□□□ -0.64
CCL28-204ENST00000514421 AKAP4Q5JQC9 854 aa11.07□□□□□ -0.64
CCL28-204ENST00000514421 MPRIPQ6WCQ1 1025 aa11.07□□□□□ -0.64
CCL28-204ENST00000514421 PROM2Q8N271 834 aa11.07□□□□□ -0.64
CCL28-204ENST00000514421 DCAF5Q96JK2 942 aa11.07□□□□□ -0.64
CCL28-204ENST00000514421 RGPD2P0DJD1 1756 aa11.07□□□□□ -0.64
CCL28-204ENST00000514421 LRRC37A3O60309 1634 aa11.06□□□□□ -0.64
CCL28-204ENST00000514421 TXNRD1Q16881 649 aa11.06□□□□□ -0.64
CCL28-204ENST00000514421 MTHFSDQ2M296 383 aaKnown RBP11.06□□□□□ -0.64
CCL28-204ENST00000514421 NBPF14Q5TI25 921 aa11.06□□□□□ -0.64
CCL28-204ENST00000514421 PNNQ9H307 717 aaKnown RBP11.06□□□□□ -0.64
CCL28-204ENST00000514421 PRKAR2BP31323 418 aa11.05□□□□□ -0.64
CCL28-204ENST00000514421 GAS2L2Q8NHY3 880 aa11.05□□□□□ -0.64
CCL28-204ENST00000514421 PIGBQ92521 554 aa11.05□□□□□ -0.64
CCL28-204ENST00000514421 RSPH6AQ9H0K4 717 aa11.05□□□□□ -0.64
CCL28-204ENST00000514421 SMARCC1Q92922 1105 aaPredicted RBP11.04□□□□□ -0.64
CCL28-204ENST00000514421 PHACTR3Q96KR7 559 aa11.04□□□□□ -0.64
CCL28-204ENST00000514421 TMOD3Q9NYL9 352 aa11.04□□□□□ -0.64
CCL28-204ENST00000514421 COL3A1P02461 1466 aaPredicted RBP11.04□□□□□ -0.64
CCL28-204ENST00000514421 NEFMP07197 916 aa11.03□□□□□ -0.64
CCL28-204ENST00000514421 HMGB2P26583 209 aaKnown RBP11.03□□□□□ -0.64
CCL28-204ENST00000514421 CABP4P57796 275 aa11.03□□□□□ -0.64
CCL28-204ENST00000514421 SLC27A3Q5K4L6 730 aa11.03□□□□□ -0.64
CCL28-204ENST00000514421 GNAT3A8MTJ3 354 aa11.02□□□□□ -0.65
CCL28-204ENST00000514421 RNMTO43148 476 aaKnown RBP11.02□□□□□ -0.65
CCL28-204ENST00000514421 NFATC2IPQ8NCF5 419 aa11.02□□□□□ -0.65
CCL28-204ENST00000514421 LGR6Q9HBX8 967 aa11.02□□□□□ -0.65
CCL28-204ENST00000514421 WNK3Q9BYP7 1800 aa11.02□□□□□ -0.65
CCL28-204ENST00000514421 ATG3Q9NT62 314 aa11.01□□□□□ -0.65
CCL28-204ENST00000514421 HTATSF1O43719 755 aaKnown RBP11□□□□□ -0.65
CCL28-204ENST00000514421 R3HDM1Q15032 1099 aaKnown RBP11□□□□□ -0.65
CCL28-204ENST00000514421 WDR43Q15061 677 aaKnown RBP eCLIP11□□□□□ -0.65
CCL28-204ENST00000514421 IL17REQ8NFR9 667 aa11□□□□□ -0.65
CCL28-204ENST00000514421 PLEKHF1Q96S99 279 aa11□□□□□ -0.65
CCL28-204ENST00000514421 SLC52A2Q9HAB3 445 aa11□□□□□ -0.65
CCL28-204ENST00000514421 LRRC4BQ9NT99 713 aa11□□□□□ -0.65
CCL28-204ENST00000514421 STK32BQ9NY57 414 aa11□□□□□ -0.65
CCL28-204ENST00000514421 CCNL1Q9UK58 526 aaPredicted RBP11□□□□□ -0.65
CCL28-204ENST00000514421 ASAP1Q9ULH1 1129 aa11□□□□□ -0.65
CCL28-204ENST00000514421 RGPD1P0DJD0 1748 aa11□□□□□ -0.65
CCL28-204ENST00000514421 RTF1Q92541 710 aaKnown RBP10.99□□□□□ -0.65
CCL28-204ENST00000514421 ADAMTS8Q9UP79 889 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms