RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 SPATA31A7Q8IWB4 1347 aa17.16■□□□□ 0.34
LIMCH1-220ENST00000514190 TMPOP42166 694 aaKnown RBP17.15■□□□□ 0.34
LIMCH1-220ENST00000514190 CARD10Q9BWT7 1032 aa17.15■□□□□ 0.34
LIMCH1-220ENST00000514190 STRN4Q9NRL3 753 aa17.15■□□□□ 0.34
LIMCH1-220ENST00000514190 FAM98CQ17RN3 349 aaKnown RBP17.14■□□□□ 0.33
LIMCH1-220ENST00000514190 LARP1Q6PKG0 1096 aaKnown RBP17.14■□□□□ 0.33
LIMCH1-220ENST00000514190 TOM1L2Q6ZVM7 507 aa17.14■□□□□ 0.33
LIMCH1-220ENST00000514190 SALL2Q9Y467 1007 aaPredicted RBP17.14■□□□□ 0.33
LIMCH1-220ENST00000514190 RGPD5Q99666 1765 aa17.14■□□□□ 0.33
LIMCH1-220ENST00000514190 NFE2L2Q16236 605 aa17.13■□□□□ 0.33
LIMCH1-220ENST00000514190 A0A0G2JS52 829 aa17.12■□□□□ 0.33
LIMCH1-220ENST00000514190 MYT1Q01538 1121 aa17.12■□□□□ 0.33
LIMCH1-220ENST00000514190 RRP7AQ9Y3A4 280 aaKnown RBP17.12■□□□□ 0.33
LIMCH1-220ENST00000514190 SPATA31A1Q5TZJ5 1347 aa17.12■□□□□ 0.33
LIMCH1-220ENST00000514190 THSD7AQ9UPZ6 1657 aa17.11■□□□□ 0.33
LIMCH1-220ENST00000514190 RIPK4P57078 832 aa17.11■□□□□ 0.33
LIMCH1-220ENST00000514190 NEUROD2Q15784 382 aa17.11■□□□□ 0.33
LIMCH1-220ENST00000514190 CCDC27Q2M243 656 aa17.11■□□□□ 0.33
LIMCH1-220ENST00000514190 KRT27Q7Z3Y8 459 aa17.1■□□□□ 0.33
LIMCH1-220ENST00000514190 RAPGEF4Q8WZA2 1011 aa17.1■□□□□ 0.33
LIMCH1-220ENST00000514190 CRB1P82279 1406 aa17.1■□□□□ 0.33
LIMCH1-220ENST00000514190 MTHFSDQ2M296 383 aaKnown RBP17.09■□□□□ 0.33
LIMCH1-220ENST00000514190 PLEKHO1Q53GL0 409 aaPredicted RBP17.09■□□□□ 0.33
LIMCH1-220ENST00000514190 CCDC125Q86Z20 511 aa17.09■□□□□ 0.33
LIMCH1-220ENST00000514190 GAS2L2Q8NHY3 880 aa17.09■□□□□ 0.33
LIMCH1-220ENST00000514190 ZNF521Q96K83 1311 aa17.09■□□□□ 0.33
LIMCH1-220ENST00000514190 RGPD2P0DJD1 1756 aa17.08■□□□□ 0.33
LIMCH1-220ENST00000514190 FAM208AQ9UK61 1670 aaKnown RBP17.08■□□□□ 0.32
LIMCH1-220ENST00000514190 TATP17735 454 aaPredicted RBP17.08■□□□□ 0.32
LIMCH1-220ENST00000514190 AMOTQ4VCS5 1084 aa17.08■□□□□ 0.32
LIMCH1-220ENST00000514190 WWC1Q8IX03 1113 aa17.08■□□□□ 0.32
LIMCH1-220ENST00000514190 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.08■□□□□ 0.32
LIMCH1-220ENST00000514190 TRIM35Q9UPQ4 493 aa17.08■□□□□ 0.32
LIMCH1-220ENST00000514190 PLEKHG2Q9H7P9 1386 aa17.07■□□□□ 0.32
LIMCH1-220ENST00000514190 PDE3BQ13370 1112 aa17.07■□□□□ 0.32
LIMCH1-220ENST00000514190 IL2RBP14784 551 aa17.05■□□□□ 0.32
LIMCH1-220ENST00000514190 LMOD3Q0VAK6 560 aa17.05■□□□□ 0.32
LIMCH1-220ENST00000514190 BARGINQ6ZT62 677 aa17.05■□□□□ 0.32
LIMCH1-220ENST00000514190 WDR63Q8IWG1 891 aa17.05■□□□□ 0.32
LIMCH1-220ENST00000514190 USP35Q9P2H5 1018 aa17.05■□□□□ 0.32
LIMCH1-220ENST00000514190 HTATSF1O43719 755 aaKnown RBP17.04■□□□□ 0.32
LIMCH1-220ENST00000514190 GOLGA2Q08379 1002 aa17.04■□□□□ 0.32
LIMCH1-220ENST00000514190 SPG7Q9UQ90 795 aa17.04■□□□□ 0.32
LIMCH1-220ENST00000514190 THRAP3Q9Y2W1 955 aaKnown RBP17.04■□□□□ 0.32
LIMCH1-220ENST00000514190 MEGF6O75095 1541 aa17.03■□□□□ 0.32
LIMCH1-220ENST00000514190 CENPBP07199 599 aaPredicted RBP17.03■□□□□ 0.32
LIMCH1-220ENST00000514190 ZNF530Q6P9A1 599 aaPredicted RBP17.03■□□□□ 0.32
LIMCH1-220ENST00000514190 GNAT3A8MTJ3 354 aa17.02■□□□□ 0.32
LIMCH1-220ENST00000514190 ZCRB1Q8TBF4 217 aaKnown RBP17.02■□□□□ 0.32
LIMCH1-220ENST00000514190 OVOS2A0A0G2JMS6 1433 aa17.02■□□□□ 0.31
LIMCH1-220ENST00000514190 AKAP4Q5JQC9 854 aa17.01■□□□□ 0.31
LIMCH1-220ENST00000514190 CDCA7LQ96GN5 454 aa17.01■□□□□ 0.31
LIMCH1-220ENST00000514190 CDCA7Q9BWT1 371 aaPredicted RBP17.01■□□□□ 0.31
LIMCH1-220ENST00000514190 IL16Q14005 1332 aa17■□□□□ 0.31
LIMCH1-220ENST00000514190 CALD1Q05682 793 aaKnown RBP17■□□□□ 0.31
LIMCH1-220ENST00000514190 SLFN5Q08AF3 891 aa17■□□□□ 0.31
LIMCH1-220ENST00000514190 SF3B2Q13435 895 aaKnown RBP17■□□□□ 0.31
LIMCH1-220ENST00000514190 C1orf141Q5JVX7 400 aa17■□□□□ 0.31
LIMCH1-220ENST00000514190 RTF1Q92541 710 aaKnown RBP17■□□□□ 0.31
LIMCH1-220ENST00000514190 PARP4Q9UKK3 1724 aaKnown RBP17■□□□□ 0.31
LIMCH1-220ENST00000514190 MAP3K5Q99683 1374 aa17■□□□□ 0.31
LIMCH1-220ENST00000514190 DISP2A7MBM2 1401 aa16.99■□□□□ 0.31
LIMCH1-220ENST00000514190 E9PSI1 815 aa16.99■□□□□ 0.31
LIMCH1-220ENST00000514190 DCTN1Q14203 1278 aa16.99■□□□□ 0.31
LIMCH1-220ENST00000514190 FAM182BQ5T319 152 aa16.99■□□□□ 0.31
LIMCH1-220ENST00000514190 TRMT2AQ8IZ69 625 aaKnown RBP16.99■□□□□ 0.31
LIMCH1-220ENST00000514190 THUMPD2Q9BTF0 503 aaKnown RBP16.99■□□□□ 0.31
LIMCH1-220ENST00000514190 MCM10Q7L590 875 aa16.98■□□□□ 0.31
LIMCH1-220ENST00000514190 IFNL2Q8IZJ0 200 aa16.98■□□□□ 0.31
LIMCH1-220ENST00000514190 IL17REQ8NFR9 667 aa16.98■□□□□ 0.31
LIMCH1-220ENST00000514190 SPINK5Q9NQ38 1064 aaPredicted RBP16.98■□□□□ 0.31
LIMCH1-220ENST00000514190 WNK3Q9BYP7 1800 aa16.98■□□□□ 0.31
LIMCH1-220ENST00000514190 CYP27B1O15528 508 aa16.97■□□□□ 0.31
LIMCH1-220ENST00000514190 PHKG2P15735 406 aa16.97■□□□□ 0.31
LIMCH1-220ENST00000514190 EXOC5O00471 708 aa16.96■□□□□ 0.31
LIMCH1-220ENST00000514190 DEFB132Q7Z7B7 95 aa16.96■□□□□ 0.31
LIMCH1-220ENST00000514190 RNMTO43148 476 aaKnown RBP16.95■□□□□ 0.3
LIMCH1-220ENST00000514190 HSP90AB1P08238 724 aaKnown RBP16.95■□□□□ 0.3
LIMCH1-220ENST00000514190 ZNF853P0CG23 659 aa16.95■□□□□ 0.3
LIMCH1-220ENST00000514190 DUSP27Q5VZP5 1158 aa16.95■□□□□ 0.3
LIMCH1-220ENST00000514190 MPRIPQ6WCQ1 1025 aa16.95■□□□□ 0.3
LIMCH1-220ENST00000514190 FAM196AQ6ZSG2 479 aa16.95■□□□□ 0.3
LIMCH1-220ENST00000514190 MYH16Q9H6N6 1097 aa16.95■□□□□ 0.3
LIMCH1-220ENST00000514190 LGR6Q9HBX8 967 aa16.95■□□□□ 0.3
LIMCH1-220ENST00000514190 IFT57Q9NWB7 429 aa16.95■□□□□ 0.3
LIMCH1-220ENST00000514190 LRRC37A3O60309 1634 aa16.95■□□□□ 0.3
LIMCH1-220ENST00000514190 PCDH11XQ9BZA7 1347 aa16.95■□□□□ 0.3
LIMCH1-220ENST00000514190 PCDH11YQ9BZA8 1340 aa16.95■□□□□ 0.3
LIMCH1-220ENST00000514190 TNS1Q9HBL0 1735 aaKnown RBP16.94■□□□□ 0.3
LIMCH1-220ENST00000514190 GNAI1P63096 354 aa16.94■□□□□ 0.3
LIMCH1-220ENST00000514190 NKX1-1Q15270 411 aaPredicted RBP16.94■□□□□ 0.3
LIMCH1-220ENST00000514190 DDX54Q8TDD1 881 aaKnown RBP16.94■□□□□ 0.3
LIMCH1-220ENST00000514190 CFAP44Q96MT7 982 aa16.94■□□□□ 0.3
LIMCH1-220ENST00000514190 CEMIPQ8WUJ3 1361 aa16.93■□□□□ 0.3
LIMCH1-220ENST00000514190 BAG6P46379 1132 aa16.93■□□□□ 0.3
LIMCH1-220ENST00000514190 DCAF5Q96JK2 942 aa16.93■□□□□ 0.3
LIMCH1-220ENST00000514190 PKD1L3Q7Z443 1732 aa16.93■□□□□ 0.3
LIMCH1-220ENST00000514190 DLG5Q8TDM6 1919 aa16.92■□□□□ 0.3
LIMCH1-220ENST00000514190 CHL1O00533 1208 aa16.92■□□□□ 0.3
LIMCH1-220ENST00000514190 DDB1Q16531 1140 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms