RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 A0A1W2PP64 1363 aa28.88■■■□□ 2.21
SQSTM1-215ENST00000514093 ANKRD36BQ8N2N9 1353 aa28.88■■■□□ 2.21
SQSTM1-215ENST00000514093 FBLN1P23142 703 aa28.88■■■□□ 2.21
SQSTM1-215ENST00000514093 TERF2IPQ9NYB0 399 aa28.88■■■□□ 2.21
SQSTM1-215ENST00000514093 SHANK3Q9BYB0 1731 aa28.87■■■□□ 2.21
SQSTM1-215ENST00000514093 CCNL1Q9UK58 526 aaPredicted RBP28.87■■■□□ 2.21
SQSTM1-215ENST00000514093 NSD2O96028 1365 aa28.87■■■□□ 2.21
SQSTM1-215ENST00000514093 DOT1LQ8TEK3 1739 aa28.86■■■□□ 2.21
SQSTM1-215ENST00000514093 COL23A1Q86Y22 540 aaPredicted RBP28.85■■■□□ 2.21
SQSTM1-215ENST00000514093 ZCRB1Q8TBF4 217 aaKnown RBP28.85■■■□□ 2.21
SQSTM1-215ENST00000514093 MSL1Q68DK7 614 aa28.84■■■□□ 2.21
SQSTM1-215ENST00000514093 MAP3K19Q56UN5 1328 aa28.83■■■□□ 2.21
SQSTM1-215ENST00000514093 LY75O60449 1722 aa28.83■■■□□ 2.21
SQSTM1-215ENST00000514093 GRIN3BO60391 1043 aa28.82■■■□□ 2.2
SQSTM1-215ENST00000514093 HOXC9P31274 260 aa28.82■■■□□ 2.2
SQSTM1-215ENST00000514093 AMPHP49418 695 aa28.82■■■□□ 2.2
SQSTM1-215ENST00000514093 IFFO2Q5TF58 517 aa28.82■■■□□ 2.2
SQSTM1-215ENST00000514093 FAM208AQ9UK61 1670 aaKnown RBP28.8■■■□□ 2.2
SQSTM1-215ENST00000514093 COG3Q96JB2 828 aa28.79■■■□□ 2.2
SQSTM1-215ENST00000514093 MEGF6O75095 1541 aa28.79■■■□□ 2.2
SQSTM1-215ENST00000514093 RGPD2P0DJD1 1756 aa28.78■■■□□ 2.2
SQSTM1-215ENST00000514093 CEP350Q5VT06 3117 aa28.78■■■□□ 2.2
SQSTM1-215ENST00000514093 USP47Q96K76 1375 aa28.76■■■□□ 2.2
SQSTM1-215ENST00000514093 USHBP1Q8N6Y0 703 aa28.76■■■□□ 2.19
SQSTM1-215ENST00000514093 NBPF6Q5VWK0 638 aa28.74■■■□□ 2.19
SQSTM1-215ENST00000514093 NBPF4Q96M43 638 aa28.74■■■□□ 2.19
SQSTM1-215ENST00000514093 ATP10DQ9P241 1426 aa28.74■■■□□ 2.19
SQSTM1-215ENST00000514093 PUS7Q96PZ0 661 aaKnown RBP28.72■■■□□ 2.19
SQSTM1-215ENST00000514093 RRS1Q15050 365 aaKnown RBP28.71■■■□□ 2.19
SQSTM1-215ENST00000514093 ZNF526Q8TF50 670 aaPredicted RBP28.69■■■□□ 2.18
SQSTM1-215ENST00000514093 CD2APQ9Y5K6 639 aa28.68■■■□□ 2.18
SQSTM1-215ENST00000514093 RAPGEF4Q8WZA2 1011 aa28.67■■■□□ 2.18
SQSTM1-215ENST00000514093 GPBP1L1Q9HC44 474 aaPredicted RBP28.67■■■□□ 2.18
SQSTM1-215ENST00000514093 WWC3Q9ULE0 1092 aa28.67■■■□□ 2.18
SQSTM1-215ENST00000514093 MPRIPQ6WCQ1 1025 aa28.65■■■□□ 2.18
SQSTM1-215ENST00000514093 TESK2Q96S53 571 aa28.65■■■□□ 2.18
SQSTM1-215ENST00000514093 C5P01031 1676 aa28.64■■■□□ 2.18
SQSTM1-215ENST00000514093 TATP17735 454 aaPredicted RBP28.64■■■□□ 2.18
SQSTM1-215ENST00000514093 SMIM5Q71RC9 77 aa28.64■■■□□ 2.18
SQSTM1-215ENST00000514093 PALLDQ8WX93 1383 aa28.63■■■□□ 2.17
SQSTM1-215ENST00000514093 ST20-MTHFSA0A0A6YYL1 179 aa28.63■■■□□ 2.17
SQSTM1-215ENST00000514093 GGNBP2Q9H3C7 697 aa28.63■■■□□ 2.17
SQSTM1-215ENST00000514093 CGNL1Q0VF96 1302 aa28.63■■■□□ 2.17
SQSTM1-215ENST00000514093 AMIGO3Q86WK7 504 aa28.62■■■□□ 2.17
SQSTM1-215ENST00000514093 FLAD1Q8NFF5 587 aa28.62■■■□□ 2.17
SQSTM1-215ENST00000514093 RTL1A6NKG5 1358 aa28.62■■■□□ 2.17
SQSTM1-215ENST00000514093 HSP90AB2PQ58FF8 381 aa28.6■■■□□ 2.17
SQSTM1-215ENST00000514093 FYB1O15117 783 aa28.59■■■□□ 2.17
SQSTM1-215ENST00000514093 PHF14O94880 888 aa28.59■■■□□ 2.17
SQSTM1-215ENST00000514093 HSPA6P17066 643 aa28.58■■■□□ 2.17
SQSTM1-215ENST00000514093 AK7Q96M32 723 aa28.58■■■□□ 2.17
SQSTM1-215ENST00000514093 PCDH11XQ9BZA7 1347 aa28.58■■■□□ 2.17
SQSTM1-215ENST00000514093 PCDH11YQ9BZA8 1340 aa28.58■■■□□ 2.17
SQSTM1-215ENST00000514093 ADCY9O60503 1353 aa28.58■■■□□ 2.17
SQSTM1-215ENST00000514093 SMG6Q86US8 1419 aaKnown RBP28.58■■■□□ 2.17
SQSTM1-215ENST00000514093 CYP27B1O15528 508 aa28.57■■■□□ 2.16
SQSTM1-215ENST00000514093 TAF1LQ8IZX4 1826 aa28.57■■■□□ 2.16
SQSTM1-215ENST00000514093 IGSF1Q8N6C5 1336 aa28.56■■■□□ 2.16
SQSTM1-215ENST00000514093 TONSLQ96HA7 1378 aa28.56■■■□□ 2.16
SQSTM1-215ENST00000514093 C4BP0C0L5 1744 aa28.54■■■□□ 2.16
SQSTM1-215ENST00000514093 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.53■■■□□ 2.16
SQSTM1-215ENST00000514093 HMGB2P26583 209 aaKnown RBP28.52■■■□□ 2.16
SQSTM1-215ENST00000514093 SMARCC1Q92922 1105 aaPredicted RBP28.52■■■□□ 2.16
SQSTM1-215ENST00000514093 INSRP06213 1382 aa28.51■■■□□ 2.16
SQSTM1-215ENST00000514093 PIGBQ92521 554 aa28.51■■■□□ 2.15
SQSTM1-215ENST00000514093 TOGARAM1Q9Y4F4 1720 aa28.51■■■□□ 2.15
SQSTM1-215ENST00000514093 ITGB4P16144 1822 aa28.48■■■□□ 2.15
SQSTM1-215ENST00000514093 LINC00116Q8NCU8 138 aa28.47■■■□□ 2.15
SQSTM1-215ENST00000514093 FLT4P35916 1363 aa28.47■■■□□ 2.15
SQSTM1-215ENST00000514093 UBR3Q6ZT12 1888 aa28.46■■■□□ 2.15
SQSTM1-215ENST00000514093 KIF3CO14782 793 aa28.45■■■□□ 2.14
SQSTM1-215ENST00000514093 SLC24A1O60721 1099 aa28.45■■■□□ 2.14
SQSTM1-215ENST00000514093 LOC102724428A0A0B4J2F2 783 aa28.44■■■□□ 2.14
SQSTM1-215ENST00000514093 SSFA2P28290 1259 aa28.44■■■□□ 2.14
SQSTM1-215ENST00000514093 SIK1P57059 783 aa28.44■■■□□ 2.14
SQSTM1-215ENST00000514093 EMILIN1Q9Y6C2 1016 aa28.44■■■□□ 2.14
SQSTM1-215ENST00000514093 GNPATO15228 680 aa28.41■■■□□ 2.14
SQSTM1-215ENST00000514093 PPM1GO15355 546 aaPredicted RBP28.41■■■□□ 2.14
SQSTM1-215ENST00000514093 TMF1P82094 1093 aa28.41■■■□□ 2.14
SQSTM1-215ENST00000514093 ITPK1Q13572 414 aa28.41■■■□□ 2.14
SQSTM1-215ENST00000514093 NKX1-1Q15270 411 aaPredicted RBP28.41■■■□□ 2.14
SQSTM1-215ENST00000514093 NSD3Q9BZ95 1437 aa28.41■■■□□ 2.14
SQSTM1-215ENST00000514093 ASAP1Q9ULH1 1129 aa28.4■■■□□ 2.14
SQSTM1-215ENST00000514093 SPG7Q9UQ90 795 aa28.39■■■□□ 2.14
SQSTM1-215ENST00000514093 MAP2P11137 1827 aaKnown RBP28.39■■■□□ 2.13
SQSTM1-215ENST00000514093 KIF24Q5T7B8 1368 aa28.38■■■□□ 2.13
SQSTM1-215ENST00000514093 PKD1L3Q7Z443 1732 aa28.38■■■□□ 2.13
SQSTM1-215ENST00000514093 MMP10P09238 476 aa28.38■■■□□ 2.13
SQSTM1-215ENST00000514093 ATP6V1AP38606 617 aa28.38■■■□□ 2.13
SQSTM1-215ENST00000514093 TMOD3Q9NYL9 352 aa28.38■■■□□ 2.13
SQSTM1-215ENST00000514093 KIF20BQ96Q89 1820 aa28.37■■■□□ 2.13
SQSTM1-215ENST00000514093 CARD14Q9BXL6 1004 aa28.36■■■□□ 2.13
SQSTM1-215ENST00000514093 BCS1LQ9Y276 419 aa28.34■■■□□ 2.13
SQSTM1-215ENST00000514093 A0A0G2JLW4 131 aa28.33■■■□□ 2.13
SQSTM1-215ENST00000514093 EYA1Q99502 592 aa28.33■■■□□ 2.13
SQSTM1-215ENST00000514093 ATG3Q9NT62 314 aa28.33■■■□□ 2.13
SQSTM1-215ENST00000514093 PXDNLA1KZ92 1463 aa28.33■■■□□ 2.13
SQSTM1-215ENST00000514093 APLP1P51693 650 aa28.31■■■□□ 2.12
SQSTM1-215ENST00000514093 NCAPD2Q15021 1401 aa28.31■■■□□ 2.12
SQSTM1-215ENST00000514093 CICQ96RK0 1608 aaPredicted RBP28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms