RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 KIF7Q2M1P5 1343 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 CUL7Q14999 1698 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 CDR1P51861 262 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 IFIT5Q13325 482 aaKnown RBP5.05□□□□□ -1.6
VCAN-209ENST00000513016 WAPLQ7Z5K2 1190 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 HYPKQ9NX55 129 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 LMOD1P29536 600 aaPredicted RBP5.05□□□□□ -1.6
VCAN-209ENST00000513016 NYXQ9GZU5 481 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 PRXQ9BXM0 1461 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 B4DLN1 442 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 MRPL12P52815 198 aaKnown RBP5.05□□□□□ -1.6
VCAN-209ENST00000513016 WDR78Q5VTH9 848 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 FBXO31Q5XUX0 539 aaPredicted RBP5.05□□□□□ -1.6
VCAN-209ENST00000513016 ZCRB1Q8TBF4 217 aaKnown RBP5.05□□□□□ -1.6
VCAN-209ENST00000513016 PDCL3Q9H2J4 239 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 MKNK2Q9HBH9 465 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 HLA-DOAP06340 250 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 GSTO1P78417 241 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 KRT32Q14532 448 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 LRRCC1Q9C099 1032 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 NAT10Q9H0A0 1025 aaKnown RBP5.05□□□□□ -1.6
VCAN-209ENST00000513016 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.05□□□□□ -1.6
VCAN-209ENST00000513016 MAP3K12Q12852 859 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 FILIP1LQ4L180 1135 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 ZNF444Q8N0Y2 327 aaPredicted RBP5.05□□□□□ -1.6
VCAN-209ENST00000513016 BEGAINQ9BUH8 593 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 ARHGEF11O15085 1522 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 GOLGA6L3A6NEY3 463 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 SPDYE4A6NLX3 237 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 BAG3O95817 575 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 STIM1Q13586 685 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 RRS1Q15050 365 aaKnown RBP5.05□□□□□ -1.6
VCAN-209ENST00000513016 MYO6Q9UM54 1294 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 UHRF1BP1Q6BDS2 1440 aa5.05□□□□□ -1.6
VCAN-209ENST00000513016 AIDAQ96BJ3 306 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 ABCF2Q9UG63 623 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 FKBP4Q02790 459 aaKnown RBP eCLIP5.04□□□□□ -1.6
VCAN-209ENST00000513016 FOXD4L5Q5VV16 416 aaPredicted RBP5.04□□□□□ -1.6
VCAN-209ENST00000513016 FOXD4L4Q8WXT5 416 aaPredicted RBP5.04□□□□□ -1.6
VCAN-209ENST00000513016 GPS2Q13227 327 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 JDP2Q8WYK2 163 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 SCLT1Q96NL6 688 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 OGFOD1Q8N543 542 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 SETDB2Q96T68 719 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 EYA3Q99504 573 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 LNPKQ9C0E8 428 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 HSP90AB2PQ58FF8 381 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 TXLNBQ8N3L3 684 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 ZGPATQ8N5A5 531 aaKnown RBP5.04□□□□□ -1.6
VCAN-209ENST00000513016 ANKRD24Q8TF21 1146 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 SEC63Q9UGP8 760 aaKnown RBP5.04□□□□□ -1.6
VCAN-209ENST00000513016 DDX49Q9Y6V7 483 aaKnown RBP5.04□□□□□ -1.6
VCAN-209ENST00000513016 PDIA4P13667 645 aaKnown RBP5.04□□□□□ -1.6
VCAN-209ENST00000513016 NBPF1Q3BBV0 1214 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 RPAP2Q8IXW5 612 aaPredicted RBP5.04□□□□□ -1.6
VCAN-209ENST00000513016 FEZ1Q99689 392 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 LUC7LQ9NQ29 371 aaKnown RBP5.04□□□□□ -1.6
VCAN-209ENST00000513016 RAB11FIP3O75154 756 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 NBPF6Q5VWK0 638 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 NBPF5PQ86XG9 351 aaPredicted RBP5.04□□□□□ -1.6
VCAN-209ENST00000513016 NBPF4Q96M43 638 aa5.04□□□□□ -1.6
VCAN-209ENST00000513016 ZNF219Q9P2Y4 722 aaPredicted RBP5.04□□□□□ -1.6
VCAN-209ENST00000513016 ASXL2Q76L83 1435 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 SUPT6HQ7KZ85 1726 aaKnown RBP5.03□□□□□ -1.6
VCAN-209ENST00000513016 RNF41Q9H4P4 317 aaPredicted RBP5.03□□□□□ -1.6
VCAN-209ENST00000513016 TFCP2L1Q9NZI6 479 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 DACH1Q9UI36 760 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 ABCC11Q96J66 1382 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 NCOA1Q15788 1441 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 NAP1L1P55209 391 aaKnown RBP5.03□□□□□ -1.6
VCAN-209ENST00000513016 ZNF710Q8N1W2 664 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 SIL1Q9H173 461 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 IDH1O75874 414 aaKnown RBP5.03□□□□□ -1.6
VCAN-209ENST00000513016 MATR3P43243 847 aaKnown RBP eCLIP5.03□□□□□ -1.6
VCAN-209ENST00000513016 CCDC152Q4G0S7 254 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 MYD88Q99836 296 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 DBF4Q9UBU7 674 aaPredicted RBP5.03□□□□□ -1.6
VCAN-209ENST00000513016 ADAMTS8Q9UP79 889 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 RTCBQ9Y3I0 505 aaKnown RBP5.03□□□□□ -1.6
VCAN-209ENST00000513016 PDE3AQ14432 1141 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 AACSQ86V21 672 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 NLRP3Q96P20 1036 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 POTEJP0CG39 1038 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 IMMTQ16891 758 aaKnown RBP5.03□□□□□ -1.6
VCAN-209ENST00000513016 CCDC178Q5BJE1 867 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 CCDC196A0A1B0GTZ2 297 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 SNRPA1P09661 255 aaKnown RBP5.03□□□□□ -1.6
VCAN-209ENST00000513016 NUP133Q8WUM0 1156 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 SDF4Q9BRK5 362 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 FAM13BQ9NYF5 915 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 CYP46A1Q9Y6A2 500 aa5.03□□□□□ -1.6
VCAN-209ENST00000513016 SRGAP3O43295 1099 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 NEBLO76041 1014 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 SMARCE1Q969G3 411 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 NSD2O96028 1365 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 DHX8Q14562 1220 aaKnown RBP5.02□□□□□ -1.61
VCAN-209ENST00000513016 TTF1Q15361 905 aaPredicted RBP5.02□□□□□ -1.61
VCAN-209ENST00000513016 AEBP1Q8IUX7 1158 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 UQCRFS1P1P0C7P4 283 aa5.02□□□□□ -1.61
VCAN-209ENST00000513016 DUSP27Q5VZP5 1158 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms