RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PRPF40AO75400 957 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-215ENST00000512632 PTMSP20962 102 aa11.39□□□□□ -0.59
LIMCH1-215ENST00000512632 FAM69CQ0P6D2 419 aa11.39□□□□□ -0.59
LIMCH1-215ENST00000512632 CASC1Q6TDU7 716 aa11.39□□□□□ -0.59
LIMCH1-215ENST00000512632 NUCB2P80303 420 aa11.39□□□□□ -0.59
LIMCH1-215ENST00000512632 NOL8Q76FK4 1167 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-215ENST00000512632 NECTIN2Q92692 538 aa11.39□□□□□ -0.59
LIMCH1-215ENST00000512632 ANP32BQ92688 251 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-215ENST00000512632 EXOC6BQ9Y2D4 811 aa11.38□□□□□ -0.59
LIMCH1-215ENST00000512632 CPSF1Q10570 1443 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-215ENST00000512632 ST18O60284 1047 aa11.38□□□□□ -0.59
LIMCH1-215ENST00000512632 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.38□□□□□ -0.59
LIMCH1-215ENST00000512632 RBM27Q9P2N5 1060 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-215ENST00000512632 PRR36Q9H6K5 1346 aa11.38□□□□□ -0.59
LIMCH1-215ENST00000512632 MSH6P52701 1360 aa11.38□□□□□ -0.59
LIMCH1-215ENST00000512632 ATP7BP35670 1465 aa11.38□□□□□ -0.59
LIMCH1-215ENST00000512632 RTL1A6NKG5 1358 aa11.37□□□□□ -0.59
LIMCH1-215ENST00000512632 MAP2P11137 1827 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-215ENST00000512632 CPS1P31327 1500 aa11.37□□□□□ -0.59
LIMCH1-215ENST00000512632 UBE2Q2Q8WVN8 375 aa11.37□□□□□ -0.59
LIMCH1-215ENST00000512632 LMBRD1Q9NUN5 540 aa11.37□□□□□ -0.59
LIMCH1-215ENST00000512632 AATKQ6ZMQ8 1374 aa11.36□□□□□ -0.59
LIMCH1-215ENST00000512632 NEK4P51957 841 aa11.36□□□□□ -0.59
LIMCH1-215ENST00000512632 HAP1P54257 671 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-215ENST00000512632 ATP10DQ9P241 1426 aa11.36□□□□□ -0.59
LIMCH1-215ENST00000512632 CDC42BPGQ6DT37 1551 aa11.36□□□□□ -0.59
LIMCH1-215ENST00000512632 REC8O95072 547 aa11.36□□□□□ -0.59
LIMCH1-215ENST00000512632 FOXD4L6Q3SYB3 417 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-215ENST00000512632 FOXD4L3Q6VB84 417 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-215ENST00000512632 TSPYL4Q9UJ04 414 aa11.36□□□□□ -0.59
LIMCH1-215ENST00000512632 ESF1Q9H501 851 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-215ENST00000512632 CDK12Q9NYV4 1490 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-215ENST00000512632 ERC2O15083 957 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 CLEC17AQ6ZS10 378 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 ANKRD26Q9UPS8 1709 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 CCDC173Q0VFZ6 552 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 ZSCAN23Q3MJ62 389 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 ZDHHC9Q9Y397 364 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 PREX1Q8TCU6 1659 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 TTC21BQ7Z4L5 1316 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 A2ML1A8K2U0 1454 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 HMMRO75330 724 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 PDE1AP54750 535 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 RTF1Q92541 710 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 ACEP12821 1306 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 RILPL2Q969X0 211 aa11.35□□□□□ -0.59
LIMCH1-215ENST00000512632 AK9Q5TCS8 1911 aa11.34□□□□□ -0.59
LIMCH1-215ENST00000512632 CYP2E1P05181 493 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-215ENST00000512632 PRIM1P49642 420 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-215ENST00000512632 RBSNQ9H1K0 784 aa11.34□□□□□ -0.59
LIMCH1-215ENST00000512632 TRIM6-TRIM34B2RNG4 842 aa11.34□□□□□ -0.59
LIMCH1-215ENST00000512632 CLTCQ00610 1675 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-215ENST00000512632 RGS12O14924 1447 aa11.34□□□□□ -0.59
LIMCH1-215ENST00000512632 MTHFSDQ2M296 383 aaKnown RBP11.33□□□□□ -0.59
LIMCH1-215ENST00000512632 PTPRCP08575 1304 aa11.33□□□□□ -0.6
LIMCH1-215ENST00000512632 KIF24Q5T7B8 1368 aa11.33□□□□□ -0.6
LIMCH1-215ENST00000512632 CWC22Q9HCG8 908 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-215ENST00000512632 NSFL1CQ9UNZ2 370 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-215ENST00000512632 HSP90AA2PQ14568 343 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-215ENST00000512632 TPRNQ4KMQ1 711 aa11.33□□□□□ -0.6
LIMCH1-215ENST00000512632 GPT2Q8TD30 523 aa11.33□□□□□ -0.6
LIMCH1-215ENST00000512632 PPP1R9BQ96SB3 815 aa11.33□□□□□ -0.6
LIMCH1-215ENST00000512632 KIF20BQ96Q89 1820 aa11.33□□□□□ -0.6
LIMCH1-215ENST00000512632 ANO2Q9NQ90 1003 aa11.32□□□□□ -0.6
LIMCH1-215ENST00000512632 FKBP5Q13451 457 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-215ENST00000512632 ZSCAN30Q86W11 494 aa11.32□□□□□ -0.6
LIMCH1-215ENST00000512632 MSNP26038 577 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-215ENST00000512632 ZNF445P59923 1031 aa11.32□□□□□ -0.6
LIMCH1-215ENST00000512632 PLPPR3Q6T4P5 718 aa11.32□□□□□ -0.6
LIMCH1-215ENST00000512632 RNF214Q8ND24 703 aa11.32□□□□□ -0.6
LIMCH1-215ENST00000512632 TMX3Q96JJ7 454 aa11.32□□□□□ -0.6
LIMCH1-215ENST00000512632 UPF3BQ9BZI7 483 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-215ENST00000512632 PALD1Q9ULE6 856 aa11.32□□□□□ -0.6
LIMCH1-215ENST00000512632 MAP3K19Q56UN5 1328 aa11.32□□□□□ -0.6
LIMCH1-215ENST00000512632 GNAI2P04899 355 aa11.32□□□□□ -0.6
LIMCH1-215ENST00000512632 KNDC1Q76NI1 1749 aa11.31□□□□□ -0.6
LIMCH1-215ENST00000512632 PNMA6EA0A0J9YXQ4 647 aa11.31□□□□□ -0.6
LIMCH1-215ENST00000512632 SYCE3A1L190 88 aa11.31□□□□□ -0.6
LIMCH1-215ENST00000512632 SLC26A8Q96RN1 970 aa11.31□□□□□ -0.6
LIMCH1-215ENST00000512632 STK31Q9BXU1 1019 aa11.31□□□□□ -0.6
LIMCH1-215ENST00000512632 TMEM63CQ9P1W3 806 aa11.31□□□□□ -0.6
LIMCH1-215ENST00000512632 KIAA1211Q6ZU35 1233 aa11.31□□□□□ -0.6
LIMCH1-215ENST00000512632 CCT4P50991 539 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-215ENST00000512632 IL1RAPL2Q9NP60 686 aa11.3□□□□□ -0.6
LIMCH1-215ENST00000512632 KIAA0232Q92628 1395 aa11.3□□□□□ -0.6
LIMCH1-215ENST00000512632 AMPHP49418 695 aa11.3□□□□□ -0.6
LIMCH1-215ENST00000512632 LRRCC1Q9C099 1032 aa11.3□□□□□ -0.6
LIMCH1-215ENST00000512632 NUTM2GQ5VZR2 741 aa11.29□□□□□ -0.6
LIMCH1-215ENST00000512632 GDPD2Q9HCC8 539 aa11.29□□□□□ -0.6
LIMCH1-215ENST00000512632 RICTORQ6R327 1708 aa11.29□□□□□ -0.6
LIMCH1-215ENST00000512632 UNC5CLQ8IV45 518 aa11.29□□□□□ -0.6
LIMCH1-215ENST00000512632 LTV1Q96GA3 475 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-215ENST00000512632 ESYT1Q9BSJ8 1104 aa11.29□□□□□ -0.6
LIMCH1-215ENST00000512632 ROBO2Q9HCK4 1378 aa11.29□□□□□ -0.6
LIMCH1-215ENST00000512632 DLC1Q96QB1 1528 aa11.29□□□□□ -0.6
LIMCH1-215ENST00000512632 MAP4K4O95819 1239 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-215ENST00000512632 MX1P20591 662 aa11.29□□□□□ -0.6
LIMCH1-215ENST00000512632 HDGFP51858 240 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-215ENST00000512632 FLIIQ13045 1269 aa11.29□□□□□ -0.6
LIMCH1-215ENST00000512632 EYA1Q99502 592 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms