RNA–Protein interactions for RNA: ENST00000512027.1

DDX41-213, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-213ENST00000512027 BTAF1O14981 1849 aa22.64■■□□□ 1.22
DDX41-213ENST00000512027 NSD2O96028 1365 aa22.63■■□□□ 1.21
DDX41-213ENST00000512027 KNSTRNQ9Y448 316 aa22.63■■□□□ 1.21
DDX41-213ENST00000512027 WASHC2AQ641Q2 1341 aa22.62■■□□□ 1.21
DDX41-213ENST00000512027 R3HDM1Q15032 1099 aaKnown RBP22.62■■□□□ 1.21
DDX41-213ENST00000512027 MORC1Q86VD1 984 aa22.61■■□□□ 1.21
DDX41-213ENST00000512027 AMER1Q5JTC6 1135 aaPredicted RBP22.59■■□□□ 1.21
DDX41-213ENST00000512027 ZCRB1Q8TBF4 217 aaKnown RBP22.59■■□□□ 1.21
DDX41-213ENST00000512027 RAPGEF4Q8WZA2 1011 aa22.59■■□□□ 1.21
DDX41-213ENST00000512027 PKD1L3Q7Z443 1732 aa22.58■■□□□ 1.21
DDX41-213ENST00000512027 NCAPD2Q15021 1401 aa22.57■■□□□ 1.2
DDX41-213ENST00000512027 PLSCR1O15162 318 aa22.57■■□□□ 1.2
DDX41-213ENST00000512027 TATP17735 454 aaPredicted RBP22.57■■□□□ 1.2
DDX41-213ENST00000512027 EIF4A2Q14240 407 aaKnown RBP22.57■■□□□ 1.2
DDX41-213ENST00000512027 PROM2Q8N271 834 aa22.56■■□□□ 1.2
DDX41-213ENST00000512027 EYA1Q99502 592 aa22.56■■□□□ 1.2
DDX41-213ENST00000512027 PER1O15534 1290 aaPredicted RBP22.55■■□□□ 1.2
DDX41-213ENST00000512027 CNGB1Q14028 1251 aaPredicted RBP22.55■■□□□ 1.2
DDX41-213ENST00000512027 TOGARAM1Q9Y4F4 1720 aa22.54■■□□□ 1.2
DDX41-213ENST00000512027 CC2D1BQ5T0F9 858 aaKnown RBP22.53■■□□□ 1.2
DDX41-213ENST00000512027 ANO8Q9HCE9 1232 aaPredicted RBP22.53■■□□□ 1.2
DDX41-213ENST00000512027 TXNRD1Q16881 649 aa22.52■■□□□ 1.2
DDX41-213ENST00000512027 SYTL4Q96C24 671 aaPredicted RBP22.52■■□□□ 1.2
DDX41-213ENST00000512027 LRP5O75197 1615 aa22.52■■□□□ 1.2
DDX41-213ENST00000512027 PRIM1P49642 420 aaKnown RBP22.5■■□□□ 1.19
DDX41-213ENST00000512027 NBPF14Q5TI25 921 aa22.5■■□□□ 1.19
DDX41-213ENST00000512027 PCDH11XQ9BZA7 1347 aa22.5■■□□□ 1.19
DDX41-213ENST00000512027 PCDH11YQ9BZA8 1340 aa22.5■■□□□ 1.19
DDX41-213ENST00000512027 CYP27B1O15528 508 aa22.49■■□□□ 1.19
DDX41-213ENST00000512027 ITGB4P16144 1822 aa22.48■■□□□ 1.19
DDX41-213ENST00000512027 PAPPAQ13219 1627 aa22.48■■□□□ 1.19
DDX41-213ENST00000512027 IGSF1Q8N6C5 1336 aa22.48■■□□□ 1.19
DDX41-213ENST00000512027 LY75O60449 1722 aa22.46■■□□□ 1.19
DDX41-213ENST00000512027 CASZ1Q86V15 1759 aa22.45■■□□□ 1.19
DDX41-213ENST00000512027 AEBP1Q8IUX7 1158 aa22.44■■□□□ 1.18
DDX41-213ENST00000512027 MTHFSP49914 203 aa22.43■■□□□ 1.18
DDX41-213ENST00000512027 KCNQ4P56696 695 aa22.43■■□□□ 1.18
DDX41-213ENST00000512027 LRRC4BQ9NT99 713 aa22.43■■□□□ 1.18
DDX41-213ENST00000512027 PDGFDQ9GZP0 370 aaPredicted RBP22.42■■□□□ 1.18
DDX41-213ENST00000512027 SPG7Q9UQ90 795 aa22.42■■□□□ 1.18
DDX41-213ENST00000512027 NPC1L1Q9UHC9 1359 aa22.41■■□□□ 1.18
DDX41-213ENST00000512027 IL13P35225 146 aa22.4■■□□□ 1.18
DDX41-213ENST00000512027 TUBGCP6Q96RT7 1819 aa22.4■■□□□ 1.18
DDX41-213ENST00000512027 STK32BQ9NY57 414 aa22.39■■□□□ 1.17
DDX41-213ENST00000512027 SLC15A2Q16348 729 aa22.38■■□□□ 1.17
DDX41-213ENST00000512027 ZNF827Q17R98 1081 aa22.38■■□□□ 1.17
DDX41-213ENST00000512027 MPRIPQ6WCQ1 1025 aa22.38■■□□□ 1.17
DDX41-213ENST00000512027 COL3A1P02461 1466 aaPredicted RBP22.37■■□□□ 1.17
DDX41-213ENST00000512027 PHKG2P15735 406 aa22.37■■□□□ 1.17
DDX41-213ENST00000512027 SULT6B1Q6IMI4 303 aa22.37■■□□□ 1.17
DDX41-213ENST00000512027 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.37■■□□□ 1.173e-6■■■■□ 26.5
DDX41-213ENST00000512027 NKX1-1Q15270 411 aaPredicted RBP22.35■■□□□ 1.17
DDX41-213ENST00000512027 IFNL2Q8IZJ0 200 aa22.35■■□□□ 1.17
DDX41-213ENST00000512027 KDRP35968 1356 aa22.35■■□□□ 1.17
DDX41-213ENST00000512027 C5P01031 1676 aa22.34■■□□□ 1.17
DDX41-213ENST00000512027 TAF1LQ8IZX4 1826 aa22.34■■□□□ 1.17
DDX41-213ENST00000512027 HMOX1P09601 288 aa22.33■■□□□ 1.17
DDX41-213ENST00000512027 PIGBQ92521 554 aa22.33■■□□□ 1.17
DDX41-213ENST00000512027 CCNL1Q9UK58 526 aaPredicted RBP22.33■■□□□ 1.17
DDX41-213ENST00000512027 ZBTB7AO95365 584 aa22.32■■□□□ 1.16
DDX41-213ENST00000512027 SLC27A3Q5K4L6 730 aa22.32■■□□□ 1.16
DDX41-213ENST00000512027 ZNF530Q6P9A1 599 aaPredicted RBP22.32■■□□□ 1.16
DDX41-213ENST00000512027 PALLDQ8WX93 1383 aa22.32■■□□□ 1.16
DDX41-213ENST00000512027 PLEKHG2Q9H7P9 1386 aa22.32■■□□□ 1.16
DDX41-213ENST00000512027 QSER1Q2KHR3 1735 aa22.31■■□□□ 1.16
DDX41-213ENST00000512027 DIAPH1O60610 1272 aaKnown RBP22.31■■□□□ 1.16
DDX41-213ENST00000512027 PLEKHO1Q53GL0 409 aaPredicted RBP22.31■■□□□ 1.16
DDX41-213ENST00000512027 KDM6AO15550 1401 aaPredicted RBP22.31■■□□□ 1.16
DDX41-213ENST00000512027 VIRMAQ69YN4 1812 aaKnown RBP22.3■■□□□ 1.16
DDX41-213ENST00000512027 AKT1S1Q96B36 256 aa22.3■■□□□ 1.16
DDX41-213ENST00000512027 SPON1Q9HCB6 807 aa22.29■■□□□ 1.16
DDX41-213ENST00000512027 TMOD3Q9NYL9 352 aa22.28■■□□□ 1.16
DDX41-213ENST00000512027 SCN11AQ9UI33 1791 aa22.27■■□□□ 1.16
DDX41-213ENST00000512027 AMOTQ4VCS5 1084 aa22.27■■□□□ 1.16
DDX41-213ENST00000512027 ATF5Q9Y2D1 282 aaPredicted RBP22.27■■□□□ 1.16
DDX41-213ENST00000512027 ASAP1Q9ULH1 1129 aa22.26■■□□□ 1.15
DDX41-213ENST00000512027 U2SURPO15042 1029 aaKnown RBP22.25■■□□□ 1.15
DDX41-213ENST00000512027 PPP2R1AP30153 589 aa22.25■■□□□ 1.15
DDX41-213ENST00000512027 C4BP0C0L5 1744 aa22.25■■□□□ 1.15
DDX41-213ENST00000512027 PNPLA7Q6ZV29 1317 aa22.25■■□□□ 1.15
DDX41-213ENST00000512027 C1orf141Q5JVX7 400 aa22.24■■□□□ 1.15
DDX41-213ENST00000512027 DCAF5Q96JK2 942 aa22.24■■□□□ 1.15
DDX41-213ENST00000512027 TFCP2L1Q9NZI6 479 aa22.24■■□□□ 1.15
DDX41-213ENST00000512027 SMARCC1Q92922 1105 aaPredicted RBP22.23■■□□□ 1.15
DDX41-213ENST00000512027 HSP90AB1P08238 724 aaKnown RBP22.22■■□□□ 1.15
DDX41-213ENST00000512027 PTGER2P43116 358 aa22.22■■□□□ 1.15
DDX41-213ENST00000512027 PPP1R1BQ9UD71 204 aaPredicted RBP22.22■■□□□ 1.15
DDX41-213ENST00000512027 ATG3Q9NT62 314 aa22.21■■□□□ 1.15
DDX41-213ENST00000512027 ERVV-2B6SEH9 535 aa22.2■■□□□ 1.14
DDX41-213ENST00000512027 MTFR1LQ9H019 292 aa22.2■■□□□ 1.14
DDX41-213ENST00000512027 UBR3Q6ZT12 1888 aa22.2■■□□□ 1.14
DDX41-213ENST00000512027 LOC102724428A0A0B4J2F2 783 aa22.19■■□□□ 1.14
DDX41-213ENST00000512027 SIK1P57059 783 aa22.19■■□□□ 1.14
DDX41-213ENST00000512027 CABP4P57796 275 aa22.19■■□□□ 1.14
DDX41-213ENST00000512027 MTHFSDQ2M296 383 aaKnown RBP22.19■■□□□ 1.14
DDX41-213ENST00000512027 DDX10Q13206 875 aaKnown RBP22.18■■□□□ 1.14
DDX41-213ENST00000512027 SMIM5Q71RC9 77 aa22.18■■□□□ 1.14
DDX41-213ENST00000512027 CFAP53Q96M91 514 aa22.18■■□□□ 1.14
DDX41-213ENST00000512027 COL24A1Q17RW2 1714 aa22.17■■□□□ 1.14
DDX41-213ENST00000512027 ADAMTS7Q9UKP4 1686 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms