RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 DOLKQ9UPQ8 538 aa5.58□□□□□ -1.52
LIMCH1-212ENST00000511424 SCTRP47872 440 aa5.57□□□□□ -1.52
LIMCH1-212ENST00000511424 ERVK-9P63128 1117 aa5.57□□□□□ -1.52
LIMCH1-212ENST00000511424 FLIIQ13045 1269 aa5.57□□□□□ -1.52
LIMCH1-212ENST00000511424 IRF5Q13568 498 aa5.57□□□□□ -1.52
LIMCH1-212ENST00000511424 OXLD1Q5BKU9 147 aa5.57□□□□□ -1.52
LIMCH1-212ENST00000511424 PRICKLE2Q7Z3G6 844 aa5.57□□□□□ -1.52
LIMCH1-212ENST00000511424 ARHGEF10LQ9HCE6 1279 aa5.57□□□□□ -1.52
LIMCH1-212ENST00000511424 A0A1W2PRU2 124 aa5.56□□□□□ -1.52
LIMCH1-212ENST00000511424 CDC14CA4D256 554 aa5.56□□□□□ -1.52
LIMCH1-212ENST00000511424 PPFIA3O75145 1194 aa5.56□□□□□ -1.52
LIMCH1-212ENST00000511424 GTF2E1P29083 439 aaPredicted RBP5.56□□□□□ -1.52
LIMCH1-212ENST00000511424 INSM1Q01101 510 aaPredicted RBP5.56□□□□□ -1.52
LIMCH1-212ENST00000511424 LYSMD3Q7Z3D4 306 aa5.56□□□□□ -1.52
LIMCH1-212ENST00000511424 RNF217Q8TC41 542 aa5.56□□□□□ -1.52
LIMCH1-212ENST00000511424 RAB6BQ9NRW1 208 aa5.56□□□□□ -1.52
LIMCH1-212ENST00000511424 COG6Q9Y2V7 657 aa5.56□□□□□ -1.52
LIMCH1-212ENST00000511424 RHOQP17081 205 aa5.55□□□□□ -1.52
LIMCH1-212ENST00000511424 GMPRP36959 345 aa5.55□□□□□ -1.52
LIMCH1-212ENST00000511424 USP4Q13107 963 aa5.55□□□□□ -1.52
LIMCH1-212ENST00000511424 CCDC155Q8N6L0 562 aa5.55□□□□□ -1.52
LIMCH1-212ENST00000511424 SIRT1Q96EB6 747 aa5.55□□□□□ -1.52
LIMCH1-212ENST00000511424 CDCA7Q9BWT1 371 aaPredicted RBP5.55□□□□□ -1.52
LIMCH1-212ENST00000511424 ERBB4Q15303 1308 aa5.54□□□□□ -1.52
LIMCH1-212ENST00000511424 SOX11P35716 441 aa5.54□□□□□ -1.52
LIMCH1-212ENST00000511424 LCE2AQ5TA79 106 aaPredicted RBP5.54□□□□□ -1.52
LIMCH1-212ENST00000511424 POM121Q96HA1 1249 aa5.54□□□□□ -1.52
LIMCH1-212ENST00000511424 CCDC85AQ96PX6 553 aaPredicted RBP5.54□□□□□ -1.52
LIMCH1-212ENST00000511424 RNF144AP50876 292 aaPredicted RBP5.53□□□□□ -1.52
LIMCH1-212ENST00000511424 FOXD4L5Q5VV16 416 aaPredicted RBP5.53□□□□□ -1.52
LIMCH1-212ENST00000511424 RIPOR1Q6ZS17 1223 aa5.53□□□□□ -1.52
LIMCH1-212ENST00000511424 KDF1Q8NAX2 398 aaPredicted RBP5.53□□□□□ -1.52
LIMCH1-212ENST00000511424 OSBPL3Q9H4L5 887 aa5.53□□□□□ -1.52
LIMCH1-212ENST00000511424 WIPF1O43516 503 aa5.52□□□□□ -1.53
LIMCH1-212ENST00000511424 GNRH1P01148 92 aa5.52□□□□□ -1.53
LIMCH1-212ENST00000511424 CLN3Q13286 438 aa5.52□□□□□ -1.53
LIMCH1-212ENST00000511424 TSGA10IPQ3SY00 556 aa5.52□□□□□ -1.53
LIMCH1-212ENST00000511424 ESCO1Q5FWF5 840 aa5.52□□□□□ -1.53
LIMCH1-212ENST00000511424 TMEM214Q6NUQ4 689 aaKnown RBP5.52□□□□□ -1.53
LIMCH1-212ENST00000511424 CNKSR1Q969H4 720 aa5.52□□□□□ -1.53
LIMCH1-212ENST00000511424 GAS2L1Q99501 681 aaPredicted RBP5.52□□□□□ -1.53
LIMCH1-212ENST00000511424 SLC35F4A4IF30 521 aa5.51□□□□□ -1.53
LIMCH1-212ENST00000511424 FAM181BA6NEQ2 426 aa5.51□□□□□ -1.53
LIMCH1-212ENST00000511424 SKIP12755 728 aa5.51□□□□□ -1.53
LIMCH1-212ENST00000511424 ITGA6P23229 1130 aa5.51□□□□□ -1.53
LIMCH1-212ENST00000511424 GPC1P35052 558 aa5.51□□□□□ -1.53
LIMCH1-212ENST00000511424 POU4F2Q12837 409 aa5.51□□□□□ -1.53
LIMCH1-212ENST00000511424 LCE2CQ5TA81 110 aa5.51□□□□□ -1.53
LIMCH1-212ENST00000511424 VWA5B2Q8N398 1253 aa5.51□□□□□ -1.53
LIMCH1-212ENST00000511424 PLPP7Q8NBV4 271 aa5.51□□□□□ -1.53
LIMCH1-212ENST00000511424 TRAK2O60296 914 aa5.5□□□□□ -1.53
LIMCH1-212ENST00000511424 PSME1Q06323 249 aa5.5□□□□□ -1.53
LIMCH1-212ENST00000511424 MAP7D1Q3KQU3 841 aa5.5□□□□□ -1.53
LIMCH1-212ENST00000511424 GNASQ5JWF2 1037 aa5.5□□□□□ -1.53
LIMCH1-212ENST00000511424 SV2AQ7L0J3 742 aa5.5□□□□□ -1.53
LIMCH1-212ENST00000511424 ZSCAN1Q8NBB4 408 aa5.5□□□□□ -1.53
LIMCH1-212ENST00000511424 ZSCAN10Q96SZ4 725 aaPredicted RBP5.5□□□□□ -1.53
LIMCH1-212ENST00000511424 ESYT1Q9BSJ8 1104 aa5.5□□□□□ -1.53
LIMCH1-212ENST00000511424 PHKA2P46019 1235 aa5.49□□□□□ -1.53
LIMCH1-212ENST00000511424 CENPCQ03188 943 aa5.49□□□□□ -1.53
LIMCH1-212ENST00000511424 EML3Q32P44 896 aa5.49□□□□□ -1.53
LIMCH1-212ENST00000511424 FOXR1Q6PIV2 292 aa5.49□□□□□ -1.53
LIMCH1-212ENST00000511424 TAS1R3Q7RTX0 852 aa5.49□□□□□ -1.53
LIMCH1-212ENST00000511424 PHTF2Q8N3S3 785 aa5.49□□□□□ -1.53
LIMCH1-212ENST00000511424 CLUAP1Q96AJ1 413 aa5.49□□□□□ -1.53
LIMCH1-212ENST00000511424 CNTNAP3BQ96NU0 1288 aa5.49□□□□□ -1.53
LIMCH1-212ENST00000511424 CNTNAP3Q9BZ76 1288 aa5.49□□□□□ -1.53
LIMCH1-212ENST00000511424 TIMMDC1Q9NPL8 285 aa5.49□□□□□ -1.53
LIMCH1-212ENST00000511424 PIK3CDO00329 1044 aa5.48□□□□□ -1.53
LIMCH1-212ENST00000511424 IL2RAP01589 272 aa5.48□□□□□ -1.53
LIMCH1-212ENST00000511424 VSIG8P0DPA2 414 aa5.48□□□□□ -1.53
LIMCH1-212ENST00000511424 TLR1Q15399 786 aa5.48□□□□□ -1.53
LIMCH1-212ENST00000511424 HDGFL1Q5TGJ6 251 aa5.48□□□□□ -1.53
LIMCH1-212ENST00000511424 NBPF10Q6P3W6 841 aaKnown RBP5.48□□□□□ -1.53
LIMCH1-212ENST00000511424 NBPF15Q8N660 670 aa5.48□□□□□ -1.53
LIMCH1-212ENST00000511424 COL25A1Q9BXS0 654 aaPredicted RBP5.48□□□□□ -1.53
LIMCH1-212ENST00000511424 STK17AQ9UEE5 414 aa5.48□□□□□ -1.53
LIMCH1-212ENST00000511424 SENP3-EIF4A1A0A087X0R7 540 aa5.47□□□□□ -1.53
LIMCH1-212ENST00000511424 POM121CA8CG34 1229 aa5.47□□□□□ -1.53
LIMCH1-212ENST00000511424 H7C1W4 665 aa5.47□□□□□ -1.53
LIMCH1-212ENST00000511424 WASLO00401 505 aaPredicted RBP5.47□□□□□ -1.53
LIMCH1-212ENST00000511424 STAU1O95793 577 aaKnown RBP5.47□□□□□ -1.53
LIMCH1-212ENST00000511424 DEPDC4Q8N2C3 294 aa5.47□□□□□ -1.53
LIMCH1-212ENST00000511424 GRIP2Q9C0E4 1043 aa5.47□□□□□ -1.53
LIMCH1-212ENST00000511424 ALG2Q9H553 416 aa5.47□□□□□ -1.53
LIMCH1-212ENST00000511424 GPAMQ9HCL2 828 aa5.47□□□□□ -1.53
LIMCH1-212ENST00000511424 SERTAD1Q9UHV2 236 aa5.47□□□□□ -1.53
LIMCH1-212ENST00000511424 NOD1Q9Y239 953 aa5.47□□□□□ -1.53
LIMCH1-212ENST00000511424 CSB-PGBD3P0DP91 1061 aa5.46□□□□□ -1.54
LIMCH1-212ENST00000511424 GDF10P55107 478 aa5.46□□□□□ -1.54
LIMCH1-212ENST00000511424 NCOA4Q13772 614 aa5.46□□□□□ -1.54
LIMCH1-212ENST00000511424 PROSER2Q86WR7 435 aaPredicted RBP5.46□□□□□ -1.54
LIMCH1-212ENST00000511424 PGBD3Q8N328 593 aa5.46□□□□□ -1.54
LIMCH1-212ENST00000511424 GPR161Q8N6U8 529 aaKnown RBP5.46□□□□□ -1.54
LIMCH1-212ENST00000511424 NANOS1Q8WY41 292 aaKnown RBP5.46□□□□□ -1.54
LIMCH1-212ENST00000511424 ETNK1Q9HBU6 452 aa5.46□□□□□ -1.54
LIMCH1-212ENST00000511424 DYRK1BQ9Y463 629 aa5.46□□□□□ -1.54
LIMCH1-212ENST00000511424 GPR25O00155 361 aa5.45□□□□□ -1.54
LIMCH1-212ENST00000511424 AIDAQ96BJ3 306 aa5.45□□□□□ -1.54
LIMCH1-212ENST00000511424 XAGE2Q96GT9 111 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms