RNA–Protein interactions for RNA: ENST00000510331.1

LSM6-206, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-206ENST00000510331 PKD1L3Q7Z443 1732 aa25.54■■□□□ 1.68
LSM6-206ENST00000510331 KAT6BQ8WYB5 2073 aa25.54■■□□□ 1.68
LSM6-206ENST00000510331 KCNQ2O43526 872 aa25.53■■□□□ 1.68
LSM6-206ENST00000510331 NCAPD2Q15021 1401 aa25.53■■□□□ 1.68
LSM6-206ENST00000510331 DDX54Q8TDD1 881 aaKnown RBP25.51■■□□□ 1.67
LSM6-206ENST00000510331 POLKQ9UBT6 870 aa25.51■■□□□ 1.67
LSM6-206ENST00000510331 WASHC2AQ641Q2 1341 aa25.49■■□□□ 1.67
LSM6-206ENST00000510331 PLSCR1O15162 318 aa25.49■■□□□ 1.67
LSM6-206ENST00000510331 ZCRB1Q8TBF4 217 aaKnown RBP25.47■■□□□ 1.67
LSM6-206ENST00000510331 RAPGEF4Q8WZA2 1011 aa25.47■■□□□ 1.67
LSM6-206ENST00000510331 PAPPAQ13219 1627 aa25.47■■□□□ 1.67
LSM6-206ENST00000510331 TOGARAM1Q9Y4F4 1720 aa25.46■■□□□ 1.67
LSM6-206ENST00000510331 KNSTRNQ9Y448 316 aa25.46■■□□□ 1.67
LSM6-206ENST00000510331 ANO8Q9HCE9 1232 aaPredicted RBP25.45■■□□□ 1.66
LSM6-206ENST00000510331 PROM2Q8N271 834 aa25.44■■□□□ 1.66
LSM6-206ENST00000510331 CASZ1Q86V15 1759 aa25.44■■□□□ 1.66
LSM6-206ENST00000510331 TATP17735 454 aaPredicted RBP25.43■■□□□ 1.66
LSM6-206ENST00000510331 AMER1Q5JTC6 1135 aaPredicted RBP25.43■■□□□ 1.66
LSM6-206ENST00000510331 TXNRD1Q16881 649 aa25.42■■□□□ 1.66
LSM6-206ENST00000510331 NBPF14Q5TI25 921 aa25.42■■□□□ 1.66
LSM6-206ENST00000510331 MORC1Q86VD1 984 aa25.42■■□□□ 1.66
LSM6-206ENST00000510331 EIF4A2Q14240 407 aaKnown RBP25.41■■□□□ 1.66
LSM6-206ENST00000510331 EYA1Q99502 592 aa25.41■■□□□ 1.66
LSM6-206ENST00000510331 LY75O60449 1722 aa25.4■■□□□ 1.66
LSM6-206ENST00000510331 PCDH11XQ9BZA7 1347 aa25.4■■□□□ 1.66
LSM6-206ENST00000510331 PCDH11YQ9BZA8 1340 aa25.4■■□□□ 1.66
LSM6-206ENST00000510331 SYTL4Q96C24 671 aaPredicted RBP25.38■■□□□ 1.65
LSM6-206ENST00000510331 ITGB4P16144 1822 aa25.37■■□□□ 1.65
LSM6-206ENST00000510331 PRIM1P49642 420 aaKnown RBP25.36■■□□□ 1.65
LSM6-206ENST00000510331 CYP27B1O15528 508 aa25.35■■□□□ 1.65
LSM6-206ENST00000510331 IGSF1Q8N6C5 1336 aa25.35■■□□□ 1.65
LSM6-206ENST00000510331 PER1O15534 1290 aaPredicted RBP25.34■■□□□ 1.65
LSM6-206ENST00000510331 TUBGCP6Q96RT7 1819 aa25.33■■□□□ 1.65
LSM6-206ENST00000510331 CC2D1BQ5T0F9 858 aaKnown RBP25.32■■□□□ 1.64
LSM6-206ENST00000510331 LRRC4BQ9NT99 713 aa25.3■■□□□ 1.64
LSM6-206ENST00000510331 STK32BQ9NY57 414 aa25.3■■□□□ 1.64
LSM6-206ENST00000510331 PDGFDQ9GZP0 370 aaPredicted RBP25.29■■□□□ 1.64
LSM6-206ENST00000510331 SPG7Q9UQ90 795 aa25.28■■□□□ 1.64
LSM6-206ENST00000510331 QSER1Q2KHR3 1735 aa25.28■■□□□ 1.64
LSM6-206ENST00000510331 NPC1L1Q9UHC9 1359 aa25.28■■□□□ 1.64
LSM6-206ENST00000510331 C5P01031 1676 aa25.27■■□□□ 1.64
LSM6-206ENST00000510331 PLEKHG2Q9H7P9 1386 aa25.27■■□□□ 1.64
LSM6-206ENST00000510331 CNGB1Q14028 1251 aaPredicted RBP25.26■■□□□ 1.63
LSM6-206ENST00000510331 SLC15A2Q16348 729 aa25.26■■□□□ 1.63
LSM6-206ENST00000510331 ZNF827Q17R98 1081 aa25.26■■□□□ 1.63
LSM6-206ENST00000510331 AEBP1Q8IUX7 1158 aa25.26■■□□□ 1.63
LSM6-206ENST00000510331 KCNQ4P56696 695 aa25.25■■□□□ 1.63
LSM6-206ENST00000510331 COL3A1P02461 1466 aaPredicted RBP25.24■■□□□ 1.63
LSM6-206ENST00000510331 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.24■■□□□ 1.63
LSM6-206ENST00000510331 TAF1LQ8IZX4 1826 aa25.23■■□□□ 1.63
LSM6-206ENST00000510331 IL13P35225 146 aa25.23■■□□□ 1.63
LSM6-206ENST00000510331 SLC27A3Q5K4L6 730 aa25.23■■□□□ 1.63
LSM6-206ENST00000510331 KDRP35968 1356 aa25.22■■□□□ 1.63
LSM6-206ENST00000510331 PHKG2P15735 406 aa25.22■■□□□ 1.63
LSM6-206ENST00000510331 MTHFSP49914 203 aa25.22■■□□□ 1.63
LSM6-206ENST00000510331 NKX1-1Q15270 411 aaPredicted RBP25.22■■□□□ 1.63
LSM6-206ENST00000510331 PALLDQ8WX93 1383 aa25.21■■□□□ 1.63
LSM6-206ENST00000510331 MPRIPQ6WCQ1 1025 aa25.21■■□□□ 1.63
LSM6-206ENST00000510331 SPON1Q9HCB6 807 aa25.2■■□□□ 1.62
LSM6-206ENST00000510331 CCNL1Q9UK58 526 aaPredicted RBP25.2■■□□□ 1.62
LSM6-206ENST00000510331 ZBTB7AO95365 584 aa25.19■■□□□ 1.62
LSM6-206ENST00000510331 IFNL2Q8IZJ0 200 aa25.19■■□□□ 1.62
LSM6-206ENST00000510331 AKT1S1Q96B36 256 aa25.19■■□□□ 1.62
LSM6-206ENST00000510331 SULT6B1Q6IMI4 303 aa25.18■■□□□ 1.62
LSM6-206ENST00000510331 KDM6AO15550 1401 aaPredicted RBP25.18■■□□□ 1.62
LSM6-206ENST00000510331 PIGBQ92521 554 aa25.16■■□□□ 1.62
LSM6-206ENST00000510331 VIRMAQ69YN4 1812 aaKnown RBP25.15■■□□□ 1.62
LSM6-206ENST00000510331 ZNF530Q6P9A1 599 aaPredicted RBP25.15■■□□□ 1.62
LSM6-206ENST00000510331 C4BP0C0L5 1744 aa25.15■■□□□ 1.62
LSM6-206ENST00000510331 SCN11AQ9UI33 1791 aa25.13■■□□□ 1.61
LSM6-206ENST00000510331 PLEKHO1Q53GL0 409 aaPredicted RBP25.13■■□□□ 1.61
LSM6-206ENST00000510331 TMOD3Q9NYL9 352 aa25.13■■□□□ 1.61
LSM6-206ENST00000510331 PNPLA7Q6ZV29 1317 aa25.12■■□□□ 1.61
LSM6-206ENST00000510331 ATF5Q9Y2D1 282 aaPredicted RBP25.12■■□□□ 1.61
LSM6-206ENST00000510331 COL24A1Q17RW2 1714 aa25.12■■□□□ 1.61
LSM6-206ENST00000510331 HMOX1P09601 288 aa25.11■■□□□ 1.61
LSM6-206ENST00000510331 AMOTQ4VCS5 1084 aa25.11■■□□□ 1.61
LSM6-206ENST00000510331 PPP1R1BQ9UD71 204 aaPredicted RBP25.11■■□□□ 1.61
LSM6-206ENST00000510331 DIAPH1O60610 1272 aaKnown RBP25.1■■□□□ 1.61
LSM6-206ENST00000510331 PTGER2P43116 358 aa25.1■■□□□ 1.61
LSM6-206ENST00000510331 MTFR1LQ9H019 292 aa25.1■■□□□ 1.61
LSM6-206ENST00000510331 UBR3Q6ZT12 1888 aa25.09■■□□□ 1.61
LSM6-206ENST00000510331 SMARCC1Q92922 1105 aaPredicted RBP25.09■■□□□ 1.61
LSM6-206ENST00000510331 TFCP2L1Q9NZI6 479 aa25.09■■□□□ 1.61
LSM6-206ENST00000510331 DCAF5Q96JK2 942 aa25.08■■□□□ 1.61
LSM6-206ENST00000510331 ASAP1Q9ULH1 1129 aa25.08■■□□□ 1.61
LSM6-206ENST00000510331 HSP90AB1P08238 724 aaKnown RBP25.07■■□□□ 1.6
LSM6-206ENST00000510331 C1orf141Q5JVX7 400 aa25.07■■□□□ 1.6
LSM6-206ENST00000510331 ADAMTS7Q9UKP4 1686 aa25.06■■□□□ 1.6
LSM6-206ENST00000510331 COL5A3P25940 1745 aaPredicted RBP25.06■■□□□ 1.6
LSM6-206ENST00000510331 ZNF831Q5JPB2 1677 aa25.05■■□□□ 1.6
LSM6-206ENST00000510331 MRC1P22897 1456 aa25.05■■□□□ 1.6
LSM6-206ENST00000510331 SGIP1Q9BQI5 828 aa25.05■■□□□ 1.6
LSM6-206ENST00000510331 ATG3Q9NT62 314 aa25.04■■□□□ 1.6
LSM6-206ENST00000510331 LOC102724428A0A0B4J2F2 783 aa25.03■■□□□ 1.6
LSM6-206ENST00000510331 ERVV-2B6SEH9 535 aa25.03■■□□□ 1.6
LSM6-206ENST00000510331 SIK1P57059 783 aa25.03■■□□□ 1.6
LSM6-206ENST00000510331 U2SURPO15042 1029 aaKnown RBP25.02■■□□□ 1.6
LSM6-206ENST00000510331 PPP2R1AP30153 589 aa25.02■■□□□ 1.6
LSM6-206ENST00000510331 LINC00116Q8NCU8 138 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms