RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 NOL3O60936 208 aaKnown RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 REC8O95072 547 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 HDGFP51858 240 aaKnown RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 NAP1L1P55209 391 aaKnown RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 TRDNQ13061 729 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 SPC24Q8NBT2 197 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 BANK1Q8NDB2 785 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 SEC62Q99442 399 aaKnown RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.23□□□□□ -1.736e-8■■■■■ 55.9
USP53-205ENST00000509769 SCAPERQ9BY12 1400 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.23□□□□□ -1.73
USP53-205ENST00000509769 CEP170BQ9Y4F5 1589 aaPredicted RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 ARID3CA6NKF2 412 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 C11orf95C9JLR9 678 aaPredicted RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 HSPA4P34932 840 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 CLCN1P35523 988 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 RGS3P49796 1198 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 NLRP5P59047 1200 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 TAF7Q15545 349 aaPredicted RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 UTP14CQ5TAP6 766 aaKnown RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 GBP6Q6ZN66 633 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 NSRP1Q9H0G5 558 aaKnown RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 FRMPD1Q5SYB0 1578 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 ABCC3O15438 1527 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 DBN1Q16643 649 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 LMNTD2Q8IXW0 634 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 CCAR2Q8N163 923 aaKnown RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 SREK1Q8WXA9 508 aaKnown RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 CCDC94Q9BW85 323 aaPredicted RBP4.23□□□□□ -1.73
USP53-205ENST00000509769 VCXQ9H320 206 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 TSPY26PQ9H489 355 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 ITGB1BP2Q9UKP3 347 aa4.23□□□□□ -1.73
USP53-205ENST00000509769 MSH6P52701 1360 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 GCOM1H8Y6P7 765 aaPredicted RBP4.22□□□□□ -1.73
USP53-205ENST00000509769 CEP104O60308 925 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 MYZAPP0CAP1 466 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 NWD1Q149M9 1564 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 CPLX2Q6PUV4 134 aaKnown RBP4.22□□□□□ -1.73
USP53-205ENST00000509769 CCDC114Q96M63 670 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 NOL10Q9BSC4 688 aaKnown RBP4.22□□□□□ -1.73
USP53-205ENST00000509769 PPP1R1BQ9UD71 204 aaPredicted RBP4.22□□□□□ -1.73
USP53-205ENST00000509769 ANKRD30AQ9BXX3 1397 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 STMN1P16949 149 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 PDE4AP27815 886 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 ATP6V1AP38606 617 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 BAG6P46379 1132 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 BLVRAP53004 296 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 UVSSAQ2YD98 709 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 FILIP1LQ4L180 1135 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 TICAM2Q86XR7 235 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 DTNBP1Q96EV8 351 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 NAP1L3Q99457 506 aaPredicted RBP4.22□□□□□ -1.73
USP53-205ENST00000509769 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.22□□□□□ -1.73
USP53-205ENST00000509769 NLRP1Q9C000 1473 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 MACROD2A1Z1Q3 448 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 ZSCAN12O43309 604 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 GMNNO75496 209 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 LUC7L3O95232 432 aaKnown RBP4.22□□□□□ -1.73
USP53-205ENST00000509769 ARMC9Q7Z3E5 817 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 GZF1Q9H116 711 aaPredicted RBP4.22□□□□□ -1.73
USP53-205ENST00000509769 RCAN3Q9UKA8 241 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 HECW1Q76N89 1606 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 RICTORQ6R327 1708 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 DISP1Q96F81 1524 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 NHSL1Q5SYE7 1610 aa4.22□□□□□ -1.73
USP53-205ENST00000509769 DNAJC8O75937 253 aaPredicted RBP4.21□□□□□ -1.73
USP53-205ENST00000509769 SLMAPQ14BN4 828 aa4.21□□□□□ -1.73
USP53-205ENST00000509769 SF3A1Q15459 793 aaKnown RBP4.21□□□□□ -1.73
USP53-205ENST00000509769 MAP7D1Q3KQU3 841 aa4.21□□□□□ -1.73
USP53-205ENST00000509769 CCDC92Q53HC0 331 aaPredicted RBP4.21□□□□□ -1.73
USP53-205ENST00000509769 PDCD7Q8N8D1 485 aaKnown RBP4.21□□□□□ -1.73
USP53-205ENST00000509769 CRACR2AQ9BSW2 395 aa4.21□□□□□ -1.73
USP53-205ENST00000509769 SPATS2LQ9NUQ6 558 aaKnown RBP4.21□□□□□ -1.73
USP53-205ENST00000509769 THEGQ9P2T0 379 aa4.21□□□□□ -1.73
USP53-205ENST00000509769 CLIP2Q9UDT6 1046 aa4.21□□□□□ -1.73
USP53-205ENST00000509769 RABGAP1Q9Y3P9 1069 aa4.21□□□□□ -1.73
USP53-205ENST00000509769 MTUS2Q5JR59 1369 aa4.21□□□□□ -1.73
USP53-205ENST00000509769 NFKBIBQ15653 356 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 OLFM4Q6UX06 510 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 RPAINQ86UA6 219 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 LCA5Q86VQ0 697 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 UBXN4Q92575 508 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 EIF2AQ9BY44 585 aaKnown RBP4.21□□□□□ -1.74
USP53-205ENST00000509769 STMN4Q9H169 189 aaPredicted RBP4.21□□□□□ -1.74
USP53-205ENST00000509769 ATP10BO94823 1461 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 ROCK1Q13464 1354 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 CCDC152Q4G0S7 254 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 CEP112Q8N8E3 955 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 RAB3IL1Q8TBN0 382 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 ZNF592Q92610 1267 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 GFM2Q969S9 779 aaKnown RBP4.21□□□□□ -1.74
USP53-205ENST00000509769 CEP63Q96MT8 703 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 BCL11BQ9C0K0 894 aaPredicted RBP4.21□□□□□ -1.74
USP53-205ENST00000509769 SALL2Q9Y467 1007 aaPredicted RBP4.21□□□□□ -1.74
USP53-205ENST00000509769 SETD1AO15047 1707 aaKnown RBP4.21□□□□□ -1.74
USP53-205ENST00000509769 RBM25P49756 843 aaKnown RBP4.21□□□□□ -1.74
USP53-205ENST00000509769 TUBB2AQ13885 445 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 MAP7Q14244 749 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 ODF2Q5BJF6 829 aa4.21□□□□□ -1.74
USP53-205ENST00000509769 B4GALNT3Q6L9W6 998 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms