RNA–Protein interactions for RNA: ENST00000509084.1

RFC1-211, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 483 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-211ENST00000509084 NLRP2Q9NX02 1062 aa13.67□□□□□ -0.22
RFC1-211ENST00000509084 BTG4Q9NY30 223 aa13.67□□□□□ -0.22
RFC1-211ENST00000509084 SLIT2O94813 1529 aa13.67□□□□□ -0.22
RFC1-211ENST00000509084 LRP6O75581 1613 aa13.66□□□□□ -0.22
RFC1-211ENST00000509084 LMOD3Q0VAK6 560 aa13.66□□□□□ -0.22
RFC1-211ENST00000509084 CCDC27Q2M243 656 aa13.66□□□□□ -0.22
RFC1-211ENST00000509084 TOM1L2Q6ZVM7 507 aa13.66□□□□□ -0.22
RFC1-211ENST00000509084 GAS2L2Q8NHY3 880 aa13.66□□□□□ -0.22
RFC1-211ENST00000509084 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.65□□□□□ -0.22
RFC1-211ENST00000509084 PARP4Q9UKK3 1724 aaKnown RBP13.65□□□□□ -0.22
RFC1-211ENST00000509084 TMPOP42166 694 aaKnown RBP13.65□□□□□ -0.22
RFC1-211ENST00000509084 PDE3BQ13370 1112 aa13.65□□□□□ -0.22
RFC1-211ENST00000509084 NFE2L2Q16236 605 aa13.65□□□□□ -0.22
RFC1-211ENST00000509084 RAPGEF4Q8WZA2 1011 aa13.65□□□□□ -0.22
RFC1-211ENST00000509084 CARD10Q9BWT7 1032 aa13.65□□□□□ -0.22
RFC1-211ENST00000509084 STRN4Q9NRL3 753 aa13.65□□□□□ -0.22
RFC1-211ENST00000509084 USHBP1Q8N6Y0 703 aa13.64□□□□□ -0.23
RFC1-211ENST00000509084 TATP17735 454 aaPredicted RBP13.63□□□□□ -0.23
RFC1-211ENST00000509084 AMOTQ4VCS5 1084 aa13.63□□□□□ -0.23
RFC1-211ENST00000509084 PLEKHO1Q53GL0 409 aaPredicted RBP13.63□□□□□ -0.23
RFC1-211ENST00000509084 MEX3CQ5U5Q3 659 aaKnown RBP13.63□□□□□ -0.23
RFC1-211ENST00000509084 LARP1Q6PKG0 1096 aaKnown RBP13.62□□□□□ -0.23
RFC1-211ENST00000509084 PHACTR3Q96KR7 559 aa13.62□□□□□ -0.23
RFC1-211ENST00000509084 C8orf37Q96NL8 207 aa13.62□□□□□ -0.23
RFC1-211ENST00000509084 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.62□□□□□ -0.231e-6■■■□□ 18.4
RFC1-211ENST00000509084 ZNF521Q96K83 1311 aa13.62□□□□□ -0.23
RFC1-211ENST00000509084 PKD1L3Q7Z443 1732 aa13.61□□□□□ -0.23
RFC1-211ENST00000509084 RIPK4P57078 832 aa13.61□□□□□ -0.23
RFC1-211ENST00000509084 CALD1Q05682 793 aaKnown RBP13.61□□□□□ -0.23
RFC1-211ENST00000509084 FNBP4Q8N3X1 1017 aaPredicted RBP13.61□□□□□ -0.23
RFC1-211ENST00000509084 NGLY1Q96IV0 654 aa13.61□□□□□ -0.23
RFC1-211ENST00000509084 THRAP3Q9Y2W1 955 aaKnown RBP13.61□□□□□ -0.23
RFC1-211ENST00000509084 OVOS2A0A0G2JMS6 1433 aa13.61□□□□□ -0.23
RFC1-211ENST00000509084 MEGF6O75095 1541 aa13.6□□□□□ -0.23
RFC1-211ENST00000509084 WNK3Q9BYP7 1800 aa13.6□□□□□ -0.23
RFC1-211ENST00000509084 IL2RBP14784 551 aa13.6□□□□□ -0.23
RFC1-211ENST00000509084 NEUROD2Q15784 382 aa13.6□□□□□ -0.23
RFC1-211ENST00000509084 ILDR2Q71H61 639 aa13.6□□□□□ -0.23
RFC1-211ENST00000509084 UNC5CLQ8IV45 518 aa13.6□□□□□ -0.23
RFC1-211ENST00000509084 WDR63Q8IWG1 891 aa13.6□□□□□ -0.23
RFC1-211ENST00000509084 CDCA7Q9BWT1 371 aaPredicted RBP13.6□□□□□ -0.23
RFC1-211ENST00000509084 SPG7Q9UQ90 795 aa13.6□□□□□ -0.23
RFC1-211ENST00000509084 RRP7AQ9Y3A4 280 aaKnown RBP13.6□□□□□ -0.23
RFC1-211ENST00000509084 SALL2Q9Y467 1007 aaPredicted RBP13.6□□□□□ -0.23
RFC1-211ENST00000509084 DLG5Q8TDM6 1919 aa13.6□□□□□ -0.23
RFC1-211ENST00000509084 HTATSF1O43719 755 aaKnown RBP13.59□□□□□ -0.23
RFC1-211ENST00000509084 GOLGA2Q08379 1002 aa13.59□□□□□ -0.23
RFC1-211ENST00000509084 MTHFSDQ2M296 383 aaKnown RBP13.59□□□□□ -0.23
RFC1-211ENST00000509084 WWC1Q8IX03 1113 aa13.59□□□□□ -0.23
RFC1-211ENST00000509084 RBM42Q9BTD8 480 aaKnown RBP13.59□□□□□ -0.23
RFC1-211ENST00000509084 BCL9LQ86UU0 1499 aa13.59□□□□□ -0.23
RFC1-211ENST00000509084 MAP3K5Q99683 1374 aa13.58□□□□□ -0.23
RFC1-211ENST00000509084 VPS72Q15906 364 aa13.58□□□□□ -0.24
RFC1-211ENST00000509084 C1orf141Q5JVX7 400 aa13.58□□□□□ -0.24
RFC1-211ENST00000509084 RTF1Q92541 710 aaKnown RBP13.58□□□□□ -0.24
RFC1-211ENST00000509084 IL16Q14005 1332 aa13.58□□□□□ -0.24
RFC1-211ENST00000509084 DISP2A7MBM2 1401 aa13.57□□□□□ -0.24
RFC1-211ENST00000509084 GNAT3A8MTJ3 354 aa13.57□□□□□ -0.24
RFC1-211ENST00000509084 AKAP4Q5JQC9 854 aa13.57□□□□□ -0.24
RFC1-211ENST00000509084 ZNF530Q6P9A1 599 aaPredicted RBP13.57□□□□□ -0.24
RFC1-211ENST00000509084 USP21Q9UK80 565 aa13.57□□□□□ -0.24
RFC1-211ENST00000509084 TRIM35Q9UPQ4 493 aa13.57□□□□□ -0.24
RFC1-211ENST00000509084 SPATA31A1Q5TZJ5 1347 aa13.57□□□□□ -0.24
RFC1-211ENST00000509084 SPATA31A5Q5VU36 1347 aa13.57□□□□□ -0.24
RFC1-211ENST00000509084 SPATA31A7Q8IWB4 1347 aa13.57□□□□□ -0.24
RFC1-211ENST00000509084 SENP3-EIF4A1A0A087X0R7 540 aa13.56□□□□□ -0.24
RFC1-211ENST00000509084 E9PSI1 815 aa13.56□□□□□ -0.24
RFC1-211ENST00000509084 AFF2P51816 1311 aa13.56□□□□□ -0.24
RFC1-211ENST00000509084 PCDH11XQ9BZA7 1347 aa13.56□□□□□ -0.24
RFC1-211ENST00000509084 PCDH11YQ9BZA8 1340 aa13.56□□□□□ -0.24
RFC1-211ENST00000509084 LRRC37A3O60309 1634 aa13.56□□□□□ -0.24
RFC1-211ENST00000509084 HSP90AB1P08238 724 aaKnown RBP13.55□□□□□ -0.24
RFC1-211ENST00000509084 BARGINQ6ZT62 677 aa13.55□□□□□ -0.24
RFC1-211ENST00000509084 USP35Q9P2H5 1018 aa13.55□□□□□ -0.24
RFC1-211ENST00000509084 CCDC9Q9Y3X0 531 aaKnown RBP13.55□□□□□ -0.24
RFC1-211ENST00000509084 IFNL2Q8IZJ0 200 aa13.54□□□□□ -0.24
RFC1-211ENST00000509084 ZCRB1Q8TBF4 217 aaKnown RBP13.54□□□□□ -0.24
RFC1-211ENST00000509084 MYH16Q9H6N6 1097 aa13.54□□□□□ -0.24
RFC1-211ENST00000509084 ATRNO75882 1429 aa13.54□□□□□ -0.24
RFC1-211ENST00000509084 TNS2Q63HR2 1409 aa13.54□□□□□ -0.24
RFC1-211ENST00000509084 ADAMTS7Q9UKP4 1686 aa13.53□□□□□ -0.24
RFC1-211ENST00000509084 SLFN5Q08AF3 891 aa13.53□□□□□ -0.24
RFC1-211ENST00000509084 TRPC5Q9UL62 973 aaPredicted RBP13.53□□□□□ -0.24
RFC1-211ENST00000509084 PHKG2P15735 406 aa13.52□□□□□ -0.25
RFC1-211ENST00000509084 GNAI1P63096 354 aa13.52□□□□□ -0.25
RFC1-211ENST00000509084 IFT57Q9NWB7 429 aa13.52□□□□□ -0.25
RFC1-211ENST00000509084 CEMIPQ8WUJ3 1361 aa13.52□□□□□ -0.25
RFC1-211ENST00000509084 SHANK3Q9BYB0 1731 aa13.52□□□□□ -0.25
RFC1-211ENST00000509084 DUSP27Q5VZP5 1158 aa13.5□□□□□ -0.25
RFC1-211ENST00000509084 ZNF772Q68DY9 489 aaPredicted RBP13.5□□□□□ -0.25
RFC1-211ENST00000509084 MCM10Q7L590 875 aa13.5□□□□□ -0.25
RFC1-211ENST00000509084 TRMT2AQ8IZ69 625 aaKnown RBP13.5□□□□□ -0.25
RFC1-211ENST00000509084 DCAF5Q96JK2 942 aa13.5□□□□□ -0.25
RFC1-211ENST00000509084 CFAP44Q96MT7 982 aa13.5□□□□□ -0.25
RFC1-211ENST00000509084 BABAM1Q9NWV8 329 aa13.5□□□□□ -0.25
RFC1-211ENST00000509084 VIRMAQ69YN4 1812 aaKnown RBP13.5□□□□□ -0.25
RFC1-211ENST00000509084 SCN11AQ9UI33 1791 aa13.5□□□□□ -0.25
RFC1-211ENST00000509084 THSD7AQ9UPZ6 1657 aa13.5□□□□□ -0.25
RFC1-211ENST00000509084 GLI3P10071 1580 aa13.49□□□□□ -0.25
RFC1-211ENST00000509084 EXOC5O00471 708 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms