RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 PROCA1Q8NCQ7 364 aaPredicted RBP8.45□□□□□ -1.06
NUP54-206ENST00000508465 ENAMQ9NRM1 1142 aa8.45□□□□□ -1.06
NUP54-206ENST00000508465 ADD1P35611 737 aaKnown RBP8.44□□□□□ -1.06
NUP54-206ENST00000508465 FOXK2Q01167 660 aa8.44□□□□□ -1.06
NUP54-206ENST00000508465 GPAT2Q6NUI2 795 aa8.43□□□□□ -1.06
NUP54-206ENST00000508465 FOXR1Q6PIV2 292 aa8.43□□□□□ -1.06
NUP54-206ENST00000508465 SEPT12Q8IYM1 358 aa8.43□□□□□ -1.06
NUP54-206ENST00000508465 GMCL1Q96IK5 515 aa8.43□□□□□ -1.06
NUP54-206ENST00000508465 ATAD2BQ9ULI0 1458 aa8.43□□□□□ -1.06
NUP54-206ENST00000508465 LILRA1O75019 489 aa8.42□□□□□ -1.06
NUP54-206ENST00000508465 FOXD4L5Q5VV16 416 aaPredicted RBP8.42□□□□□ -1.06
NUP54-206ENST00000508465 SMARCA4P51532 1647 aa8.41□□□□□ -1.06
NUP54-206ENST00000508465 MROH2BQ7Z745 1585 aa8.41□□□□□ -1.06
NUP54-206ENST00000508465 NCAPD3P42695 1498 aa8.41□□□□□ -1.06
NUP54-206ENST00000508465 RNF144AP50876 292 aaPredicted RBP8.41□□□□□ -1.06
NUP54-206ENST00000508465 FBXO31Q5XUX0 539 aaPredicted RBP8.41□□□□□ -1.06
NUP54-206ENST00000508465 LYPD4Q6UWN0 246 aa8.41□□□□□ -1.06
NUP54-206ENST00000508465 PRICKLE2Q7Z3G6 844 aa8.41□□□□□ -1.06
NUP54-206ENST00000508465 ESPNB1AK53 854 aa8.4□□□□□ -1.06
NUP54-206ENST00000508465 EPS8L1Q8TE68 723 aa8.4□□□□□ -1.06
NUP54-206ENST00000508465 KDM4CQ9H3R0 1056 aa8.4□□□□□ -1.06
NUP54-206ENST00000508465 CELA2BP08218 269 aaPredicted RBP8.39□□□□□ -1.07
NUP54-206ENST00000508465 USP17L8P0C7I0 530 aa8.39□□□□□ -1.07
NUP54-206ENST00000508465 KDF1Q8NAX2 398 aaPredicted RBP8.39□□□□□ -1.07
NUP54-206ENST00000508465 FAM117AQ9C073 453 aa8.39□□□□□ -1.07
NUP54-206ENST00000508465 ATP5J2-PTCD1G3V325 749 aa8.38□□□□□ -1.07
NUP54-206ENST00000508465 CCDC125Q86Z20 511 aa8.38□□□□□ -1.07
NUP54-206ENST00000508465 CYLDQ9NQC7 956 aa8.38□□□□□ -1.07
NUP54-206ENST00000508465 MBIPQ9NS73 344 aa8.38□□□□□ -1.07
NUP54-206ENST00000508465 BAZ1AQ9NRL2 1556 aaPredicted RBP8.38□□□□□ -1.07
NUP54-206ENST00000508465 PHF20L1A8MW92 1017 aa8.37□□□□□ -1.07
NUP54-206ENST00000508465 H7C1W4 665 aa8.37□□□□□ -1.07
NUP54-206ENST00000508465 RHOQP17081 205 aa8.37□□□□□ -1.07
NUP54-206ENST00000508465 GPC1P35052 558 aa8.37□□□□□ -1.07
NUP54-206ENST00000508465 TRIM22Q8IYM9 498 aa8.37□□□□□ -1.07
NUP54-206ENST00000508465 HMX1Q9NP08 348 aaPredicted RBP8.37□□□□□ -1.07
NUP54-206ENST00000508465 CUEDC1Q9NWM3 386 aaPredicted RBP8.37□□□□□ -1.07
NUP54-206ENST00000508465 SMARCA2P51531 1590 aa8.36□□□□□ -1.07
NUP54-206ENST00000508465 GAS6Q14393 721 aa8.36□□□□□ -1.07
NUP54-206ENST00000508465 RIPOR1Q6ZS17 1223 aa8.36□□□□□ -1.07
NUP54-206ENST00000508465 BEND7Q8N7W2 519 aaPredicted RBP8.36□□□□□ -1.07
NUP54-206ENST00000508465 GPBP1L1Q9HC44 474 aaPredicted RBP8.36□□□□□ -1.07
NUP54-206ENST00000508465 MEN1O00255 615 aa8.35□□□□□ -1.07
NUP54-206ENST00000508465 PODNQ7Z5L7 613 aa8.35□□□□□ -1.07
NUP54-206ENST00000508465 BAZ1BQ9UIG0 1483 aaKnown RBP8.34□□□□□ -1.07
NUP54-206ENST00000508465 RFC5P40937 340 aa8.34□□□□□ -1.07
NUP54-206ENST00000508465 SLC27A3Q5K4L6 730 aa8.34□□□□□ -1.07
NUP54-206ENST00000508465 RNF20Q5VTR2 975 aa8.34□□□□□ -1.07
NUP54-206ENST00000508465 NEDD1Q8NHV4 660 aa8.34□□□□□ -1.07
NUP54-206ENST00000508465 ZNF837Q96EG3 531 aaPredicted RBP8.34□□□□□ -1.07
NUP54-206ENST00000508465 NLRP3Q96P20 1036 aa8.34□□□□□ -1.07
NUP54-206ENST00000508465 TRERF1Q96PN7 1200 aa8.34□□□□□ -1.07
NUP54-206ENST00000508465 DYRK1BQ9Y463 629 aa8.34□□□□□ -1.07
NUP54-206ENST00000508465 ZBBXA8MT70 800 aa8.33□□□□□ -1.08
NUP54-206ENST00000508465 GIGYF1O75420 1035 aaPredicted RBP8.33□□□□□ -1.08
NUP54-206ENST00000508465 DBN1Q16643 649 aa8.33□□□□□ -1.08
NUP54-206ENST00000508465 TMEM259Q4ZIN3 620 aa8.33□□□□□ -1.08
NUP54-206ENST00000508465 NSFL1CQ9UNZ2 370 aaKnown RBP8.33□□□□□ -1.08
NUP54-206ENST00000508465 PCDHB9Q9Y5E1 797 aa8.33□□□□□ -1.08
NUP54-206ENST00000508465 IGF1RP08069 1367 aa8.33□□□□□ -1.08
NUP54-206ENST00000508465 A0A1W2PRU2 124 aa8.32□□□□□ -1.08
NUP54-206ENST00000508465 GPR25O00155 361 aa8.32□□□□□ -1.08
NUP54-206ENST00000508465 BCRP11274 1271 aa8.32□□□□□ -1.08
NUP54-206ENST00000508465 GAS2L1Q99501 681 aaPredicted RBP8.32□□□□□ -1.08
NUP54-206ENST00000508465 ESF1Q9H501 851 aaKnown RBP8.32□□□□□ -1.08
NUP54-206ENST00000508465 MSTNO14793 375 aa8.31□□□□□ -1.08
NUP54-206ENST00000508465 MCCD1P59942 119 aaPredicted RBP8.31□□□□□ -1.08
NUP54-206ENST00000508465 POU4F2Q12837 409 aa8.31□□□□□ -1.08
NUP54-206ENST00000508465 CC2D2BQ6DHV5 1058 aa8.31□□□□□ -1.08
NUP54-206ENST00000508465 ZNF592Q92610 1267 aa8.31□□□□□ -1.08
NUP54-206ENST00000508465 CNTNAP5Q8WYK1 1306 aa8.3□□□□□ -1.08
NUP54-206ENST00000508465 RSF1Q96T23 1441 aaPredicted RBP8.3□□□□□ -1.08
NUP54-206ENST00000508465 NESP48681 1621 aa8.3□□□□□ -1.08
NUP54-206ENST00000508465 GTPBP3Q969Y2 492 aaKnown RBP8.3□□□□□ -1.08
NUP54-206ENST00000508465 PCMTD1Q96MG8 357 aaPredicted RBP8.3□□□□□ -1.08
NUP54-206ENST00000508465 WIZO95785 1651 aa8.3□□□□□ -1.08
NUP54-206ENST00000508465 HMGXB3Q12766 1538 aa8.29□□□□□ -1.08
NUP54-206ENST00000508465 MX2P20592 715 aa8.29□□□□□ -1.08
NUP54-206ENST00000508465 WDR44Q5JSH3 913 aa8.29□□□□□ -1.08
NUP54-206ENST00000508465 CYP2U1Q7Z449 544 aa8.29□□□□□ -1.08
NUP54-206ENST00000508465 TRIM34Q9BYJ4 488 aa8.29□□□□□ -1.08
NUP54-206ENST00000508465 LRRC4BQ9NT99 713 aa8.29□□□□□ -1.08
NUP54-206ENST00000508465 PEG3Q9GZU2 1588 aa8.28□□□□□ -1.08
NUP54-206ENST00000508465 ERVK-9P63128 1117 aa8.28□□□□□ -1.08
NUP54-206ENST00000508465 DCAF5Q96JK2 942 aa8.28□□□□□ -1.08
NUP54-206ENST00000508465 ZNF330Q9Y3S2 320 aaPredicted RBP8.28□□□□□ -1.08
NUP54-206ENST00000508465 CLN3Q13286 438 aa8.27□□□□□ -1.09
NUP54-206ENST00000508465 PLA2G4EQ3MJ16 856 aa8.27□□□□□ -1.09
NUP54-206ENST00000508465 NBPF10Q6P3W6 841 aaKnown RBP8.27□□□□□ -1.09
NUP54-206ENST00000508465 NBPF15Q8N660 670 aa8.27□□□□□ -1.09
NUP54-206ENST00000508465 ACDQ96AP0 544 aa8.27□□□□□ -1.09
NUP54-206ENST00000508465 GRIP2Q9C0E4 1043 aa8.27□□□□□ -1.09
NUP54-206ENST00000508465 GOPCQ9HD26 462 aa8.27□□□□□ -1.09
NUP54-206ENST00000508465 TIMMDC1Q9NPL8 285 aa8.27□□□□□ -1.09
NUP54-206ENST00000508465 SPATA31C2B4DYI2 1134 aa8.26□□□□□ -1.09
NUP54-206ENST00000508465 FBXO45P0C2W1 286 aa8.26□□□□□ -1.09
NUP54-206ENST00000508465 NUCKS1Q9H1E3 243 aaKnown RBP8.26□□□□□ -1.09
NUP54-206ENST00000508465 ERCC6Q03468 1493 aa8.26□□□□□ -1.09
NUP54-206ENST00000508465 F11P03951 625 aa8.25□□□□□ -1.09
NUP54-206ENST00000508465 TAS1R3Q7RTX0 852 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms