RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 NRXN3Q9Y4C0 1643 aa19.47■□□□□ 0.71
SCLT1-208ENST00000506368 ZBTB7BO15156 539 aaPredicted RBP19.47■□□□□ 0.71
SCLT1-208ENST00000506368 VGFO15240 615 aaPredicted RBP19.47■□□□□ 0.71
SCLT1-208ENST00000506368 GTF2F1P35269 517 aaKnown RBP eCLIP19.47■□□□□ 0.71
SCLT1-208ENST00000506368 GTPBP4Q9BZE4 634 aaKnown RBP19.47■□□□□ 0.71
SCLT1-208ENST00000506368 NPHP4O75161 1426 aaPredicted RBP19.46■□□□□ 0.71
SCLT1-208ENST00000506368 SLC12A5Q9H2X9 1139 aa19.46■□□□□ 0.71
SCLT1-208ENST00000506368 ANKRD26Q9UPS8 1709 aa19.46■□□□□ 0.71
SCLT1-208ENST00000506368 ADGRB1O14514 1584 aa19.45■□□□□ 0.7
SCLT1-208ENST00000506368 PHF14O94880 888 aa19.45■□□□□ 0.7
SCLT1-208ENST00000506368 HDGFP51858 240 aaKnown RBP19.45■□□□□ 0.7
SCLT1-208ENST00000506368 INTS3Q68E01 1043 aaKnown RBP19.45■□□□□ 0.7
SCLT1-208ENST00000506368 CASC1Q6TDU7 716 aa19.45■□□□□ 0.7
SCLT1-208ENST00000506368 FAM184AQ8NB25 1140 aa19.45■□□□□ 0.7
SCLT1-208ENST00000506368 PLEKHG1Q9ULL1 1385 aa19.45■□□□□ 0.7
SCLT1-208ENST00000506368 UVSSAQ2YD98 709 aa19.44■□□□□ 0.7
SCLT1-208ENST00000506368 RBM42Q9BTD8 480 aaKnown RBP19.44■□□□□ 0.7
SCLT1-208ENST00000506368 CDC42BPGQ6DT37 1551 aa19.43■□□□□ 0.7
SCLT1-208ENST00000506368 KIF20AO95235 890 aa19.43■□□□□ 0.7
SCLT1-208ENST00000506368 ADAMTS13Q76LX8 1427 aa19.42■□□□□ 0.7
SCLT1-208ENST00000506368 EVC2Q86UK5 1308 aa19.42■□□□□ 0.7
SCLT1-208ENST00000506368 PRPF40AO75400 957 aaKnown RBP19.42■□□□□ 0.7
SCLT1-208ENST00000506368 MCM2P49736 904 aa19.42■□□□□ 0.7
SCLT1-208ENST00000506368 GPT2Q8TD30 523 aa19.42■□□□□ 0.7
SCLT1-208ENST00000506368 USP26Q9BXU7 913 aa19.42■□□□□ 0.7
SCLT1-208ENST00000506368 C14orf93Q9H972 538 aaKnown RBP19.42■□□□□ 0.7
SCLT1-208ENST00000506368 ALKQ9UM73 1620 aa19.4■□□□□ 0.7
SCLT1-208ENST00000506368 SETD1AO15047 1707 aaKnown RBP19.4■□□□□ 0.7
SCLT1-208ENST00000506368 ABCC4O15439 1325 aa19.39■□□□□ 0.7
SCLT1-208ENST00000506368 REC8O95072 547 aa19.39■□□□□ 0.69
SCLT1-208ENST00000506368 TTC22Q5TAA0 569 aa19.39■□□□□ 0.69
SCLT1-208ENST00000506368 TMEM132EQ6IEE7 984 aa19.39■□□□□ 0.69
SCLT1-208ENST00000506368 PIBF1Q8WXW3 757 aa19.39■□□□□ 0.69
SCLT1-208ENST00000506368 TSPY26PQ9H489 355 aa19.39■□□□□ 0.69
SCLT1-208ENST00000506368 AK9Q5TCS8 1911 aa19.39■□□□□ 0.69
SCLT1-208ENST00000506368 PTMAP06454 111 aaKnown RBP19.39■□□□□ 0.69
SCLT1-208ENST00000506368 TMEM63CQ9P1W3 806 aa19.39■□□□□ 0.69
SCLT1-208ENST00000506368 METP08581 1390 aa19.38■□□□□ 0.69
SCLT1-208ENST00000506368 LETM1O95202 739 aaPredicted RBP19.38■□□□□ 0.69
SCLT1-208ENST00000506368 SYCE3A1L190 88 aa19.37■□□□□ 0.69
SCLT1-208ENST00000506368 ZSCAN20P17040 1043 aaPredicted RBP19.37■□□□□ 0.69
SCLT1-208ENST00000506368 PLEKHM2Q8IWE5 1019 aa19.37■□□□□ 0.69
SCLT1-208ENST00000506368 GSPT1P15170 499 aaKnown RBP19.36■□□□□ 0.69
SCLT1-208ENST00000506368 API5Q9BZZ5 524 aaKnown RBP19.36■□□□□ 0.69
SCLT1-208ENST00000506368 U2SURPO15042 1029 aaKnown RBP19.36■□□□□ 0.69
SCLT1-208ENST00000506368 MRPL50Q8N5N7 158 aaKnown RBP19.36■□□□□ 0.69
SCLT1-208ENST00000506368 DCTPP1Q9H773 170 aa19.36■□□□□ 0.69
SCLT1-208ENST00000506368 PNPLA6Q8IY17 1366 aa19.36■□□□□ 0.69
SCLT1-208ENST00000506368 TULP4Q9NRJ4 1543 aa19.35■□□□□ 0.69
SCLT1-208ENST00000506368 FCHSD2O94868 740 aa19.35■□□□□ 0.69
SCLT1-208ENST00000506368 TAF3Q5VWG9 929 aa19.35■□□□□ 0.69
SCLT1-208ENST00000506368 ARHGEF28Q8N1W1 1705 aaKnown RBP19.35■□□□□ 0.69
SCLT1-208ENST00000506368 DNTTIP2Q5QJE6 756 aaKnown RBP19.34■□□□□ 0.69
SCLT1-208ENST00000506368 ZDHHC9Q9Y397 364 aa19.34■□□□□ 0.69
SCLT1-208ENST00000506368 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.34■□□□□ 0.69
SCLT1-208ENST00000506368 STRCP1A6NGW2 1772 aa19.34■□□□□ 0.69
SCLT1-208ENST00000506368 ZNF335Q9H4Z2 1342 aaPredicted RBP19.33■□□□□ 0.69
SCLT1-208ENST00000506368 TPM3P06753 285 aa19.33■□□□□ 0.69
SCLT1-208ENST00000506368 INTS4Q96HW7 963 aaKnown RBP19.33■□□□□ 0.69
SCLT1-208ENST00000506368 RBM27Q9P2N5 1060 aaKnown RBP19.33■□□□□ 0.69
SCLT1-208ENST00000506368 TRAK1Q9UPV9 953 aa19.33■□□□□ 0.69
SCLT1-208ENST00000506368 TBX22Q9Y458 520 aa19.33■□□□□ 0.69
SCLT1-208ENST00000506368 KIF3AQ9Y496 699 aa19.33■□□□□ 0.69
SCLT1-208ENST00000506368 PTPRUQ92729 1446 aa19.33■□□□□ 0.69
SCLT1-208ENST00000506368 SIRT2Q8IXJ6 389 aa19.32■□□□□ 0.68
SCLT1-208ENST00000506368 SPTLC3Q9NUV7 552 aa19.32■□□□□ 0.68
SCLT1-208ENST00000506368 DIAPH1O60610 1272 aaKnown RBP19.32■□□□□ 0.68
SCLT1-208ENST00000506368 STK26Q9P289 416 aa19.32■□□□□ 0.68
SCLT1-208ENST00000506368 BRD1O95696 1058 aa19.31■□□□□ 0.68
SCLT1-208ENST00000506368 NOLC1Q14978 699 aaKnown RBP eCLIP19.31■□□□□ 0.68
SCLT1-208ENST00000506368 FAM135BQ49AJ0 1406 aa19.31■□□□□ 0.68
SCLT1-208ENST00000506368 VAMP4O75379 141 aa19.31■□□□□ 0.68
SCLT1-208ENST00000506368 GNAI1P63096 354 aa19.31■□□□□ 0.68
SCLT1-208ENST00000506368 PKP1Q13835 747 aa19.31■□□□□ 0.68
SCLT1-208ENST00000506368 RBM33Q96EV2 1170 aaKnown RBP19.31■□□□□ 0.68
SCLT1-208ENST00000506368 DIAPH3Q9NSV4 1193 aa19.31■□□□□ 0.68
SCLT1-208ENST00000506368 FKBP5Q13451 457 aaPredicted RBP19.3■□□□□ 0.68
SCLT1-208ENST00000506368 IFT57Q9NWB7 429 aa19.3■□□□□ 0.68
SCLT1-208ENST00000506368 DIP2AQ14689 1571 aa19.3■□□□□ 0.68
SCLT1-208ENST00000506368 CHD2O14647 1828 aaKnown RBP19.3■□□□□ 0.68
SCLT1-208ENST00000506368 RPAP2Q8IXW5 612 aaPredicted RBP19.29■□□□□ 0.68
SCLT1-208ENST00000506368 HAP1P54257 671 aaPredicted RBP19.29■□□□□ 0.68
SCLT1-208ENST00000506368 CUL4AQ13619 759 aa19.29■□□□□ 0.68
SCLT1-208ENST00000506368 ATAD2Q6PL18 1390 aa19.29■□□□□ 0.68
SCLT1-208ENST00000506368 ERC2O15083 957 aa19.28■□□□□ 0.68
SCLT1-208ENST00000506368 ZGPATQ8N5A5 531 aaKnown RBP19.28■□□□□ 0.68
SCLT1-208ENST00000506368 LRRC7Q96NW7 1537 aa19.28■□□□□ 0.68
SCLT1-208ENST00000506368 AMOTL2Q9Y2J4 779 aa19.28■□□□□ 0.68
SCLT1-208ENST00000506368 A0A1W2PP64 1363 aa19.27■□□□□ 0.68
SCLT1-208ENST00000506368 KCNA6P17658 529 aa19.27■□□□□ 0.68
SCLT1-208ENST00000506368 ANAPC15P60006 121 aa19.27■□□□□ 0.68
SCLT1-208ENST00000506368 CHAF1AQ13111 956 aaPredicted RBP19.27■□□□□ 0.68
SCLT1-208ENST00000506368 ZNF710Q8N1W2 664 aa19.26■□□□□ 0.67
SCLT1-208ENST00000506368 TMEM87AQ8NBN3 555 aa19.26■□□□□ 0.67
SCLT1-208ENST00000506368 FEZ1Q99689 392 aa19.26■□□□□ 0.67
SCLT1-208ENST00000506368 TERF2IPQ9NYB0 399 aa19.26■□□□□ 0.67
SCLT1-208ENST00000506368 EPB41L2O43491 1005 aaKnown RBP19.25■□□□□ 0.67
SCLT1-208ENST00000506368 ANKRD44Q8N8A2 993 aa19.25■□□□□ 0.67
SCLT1-208ENST00000506368 IL17RAQ96F46 866 aa19.25■□□□□ 0.67
SCLT1-208ENST00000506368 C1orf115Q9H7X2 142 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms