RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 SEPT12Q8IYM1 358 aa10.94□□□□□ -0.66
LIMCH1-206ENST00000505705 MIER1Q8N108 512 aa10.94□□□□□ -0.66
LIMCH1-206ENST00000505705 DDB1Q16531 1140 aa10.93□□□□□ -0.66
LIMCH1-206ENST00000505705 PNNQ9H307 717 aaKnown RBP10.93□□□□□ -0.66
LIMCH1-206ENST00000505705 FAM208AQ9UK61 1670 aaKnown RBP10.92□□□□□ -0.66
LIMCH1-206ENST00000505705 CCDC184Q52MB2 194 aa10.92□□□□□ -0.66
LIMCH1-206ENST00000505705 AEBP1Q8IUX7 1158 aa10.92□□□□□ -0.66
LIMCH1-206ENST00000505705 GLI3P10071 1580 aa10.91□□□□□ -0.66
LIMCH1-206ENST00000505705 RGPD2P0DJD1 1756 aa10.91□□□□□ -0.66
LIMCH1-206ENST00000505705 ONECUT3O60422 494 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-206ENST00000505705 FCHSD2O94868 740 aa10.91□□□□□ -0.66
LIMCH1-206ENST00000505705 PLEKHO1Q53GL0 409 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-206ENST00000505705 FAM9BQ8IZU0 186 aa10.91□□□□□ -0.66
LIMCH1-206ENST00000505705 ZCRB1Q8TBF4 217 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-206ENST00000505705 DDX54Q8TDD1 881 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-206ENST00000505705 SPG7Q9UQ90 795 aa10.91□□□□□ -0.66
LIMCH1-206ENST00000505705 COL3A1P02461 1466 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-206ENST00000505705 CCER2I3L3R5 266 aa10.9□□□□□ -0.66
LIMCH1-206ENST00000505705 PRKAR2BP31323 418 aa10.9□□□□□ -0.66
LIMCH1-206ENST00000505705 AMOTQ4VCS5 1084 aa10.9□□□□□ -0.66
LIMCH1-206ENST00000505705 KRT27Q7Z3Y8 459 aa10.9□□□□□ -0.66
LIMCH1-206ENST00000505705 MAPK8IP3Q9UPT6 1336 aa10.89□□□□□ -0.67
LIMCH1-206ENST00000505705 ADAMTS8Q9UP79 889 aa10.89□□□□□ -0.67
LIMCH1-206ENST00000505705 U3KPZ7 1027 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-206ENST00000505705 C1orf141Q5JVX7 400 aa10.88□□□□□ -0.67
LIMCH1-206ENST00000505705 CCDC146Q8IYE0 955 aa10.88□□□□□ -0.67
LIMCH1-206ENST00000505705 RSPH6AQ9H0K4 717 aa10.88□□□□□ -0.67
LIMCH1-206ENST00000505705 MEGF6O75095 1541 aa10.88□□□□□ -0.67
LIMCH1-206ENST00000505705 PCDH11XQ9BZA7 1347 aa10.87□□□□□ -0.67
LIMCH1-206ENST00000505705 PCDH11YQ9BZA8 1340 aa10.87□□□□□ -0.67
LIMCH1-206ENST00000505705 RGS12O14924 1447 aa10.87□□□□□ -0.67
LIMCH1-206ENST00000505705 ZNF530Q6P9A1 599 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-206ENST00000505705 IFNL2Q8IZJ0 200 aa10.87□□□□□ -0.67
LIMCH1-206ENST00000505705 GAS2L2Q8NHY3 880 aa10.87□□□□□ -0.67
LIMCH1-206ENST00000505705 PNISRQ8TF01 805 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-206ENST00000505705 KDRP35968 1356 aa10.87□□□□□ -0.67
LIMCH1-206ENST00000505705 OVOS2A0A0G2JMS6 1433 aa10.86□□□□□ -0.67
LIMCH1-206ENST00000505705 DISP2A7MBM2 1401 aa10.86□□□□□ -0.67
LIMCH1-206ENST00000505705 MTHFSDQ2M296 383 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-206ENST00000505705 FAM182BQ5T319 152 aa10.86□□□□□ -0.67
LIMCH1-206ENST00000505705 RUNDC1Q96C34 613 aa10.86□□□□□ -0.67
LIMCH1-206ENST00000505705 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.86□□□□□ -0.67
LIMCH1-206ENST00000505705 NCAPD2Q15021 1401 aa10.85□□□□□ -0.67
LIMCH1-206ENST00000505705 RGPD1P0DJD0 1748 aa10.85□□□□□ -0.67
LIMCH1-206ENST00000505705 PARP4Q9UKK3 1724 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-206ENST00000505705 NEUROD2Q15784 382 aa10.85□□□□□ -0.67
LIMCH1-206ENST00000505705 PHACTR3Q96KR7 559 aa10.85□□□□□ -0.67
LIMCH1-206ENST00000505705 TNS2Q63HR2 1409 aa10.84□□□□□ -0.67
LIMCH1-206ENST00000505705 HSP90AB1P08238 724 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-206ENST00000505705 AKAP4Q5JQC9 854 aa10.84□□□□□ -0.67
LIMCH1-206ENST00000505705 FAM196AQ6ZSG2 479 aa10.84□□□□□ -0.67
LIMCH1-206ENST00000505705 MARCH10Q8NA82 808 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-206ENST00000505705 RTF1Q92541 710 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-206ENST00000505705 SYTL4Q96C24 671 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-206ENST00000505705 PLEKHF1Q96S99 279 aa10.84□□□□□ -0.67
LIMCH1-206ENST00000505705 THSD7AQ9UPZ6 1657 aa10.83□□□□□ -0.68
LIMCH1-206ENST00000505705 CYP27B1O15528 508 aa10.83□□□□□ -0.68
LIMCH1-206ENST00000505705 PHKG2P15735 406 aa10.83□□□□□ -0.68
LIMCH1-206ENST00000505705 ACSBG1Q96GR2 724 aa10.83□□□□□ -0.68
LIMCH1-206ENST00000505705 WNK3Q9BYP7 1800 aa10.83□□□□□ -0.68
LIMCH1-206ENST00000505705 PLEKHG2Q9H7P9 1386 aa10.82□□□□□ -0.68
LIMCH1-206ENST00000505705 SENP3-EIF4A1A0A087X0R7 540 aa10.82□□□□□ -0.68
LIMCH1-206ENST00000505705 GNAT3A8MTJ3 354 aa10.82□□□□□ -0.68
LIMCH1-206ENST00000505705 RIPK4P57078 832 aa10.82□□□□□ -0.68
LIMCH1-206ENST00000505705 MPRIPQ6WCQ1 1025 aa10.82□□□□□ -0.68
LIMCH1-206ENST00000505705 RRP7AQ9Y3A4 280 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-206ENST00000505705 LRRC37A3O60309 1634 aa10.82□□□□□ -0.68
LIMCH1-206ENST00000505705 APAF1O14727 1248 aa10.81□□□□□ -0.68
LIMCH1-206ENST00000505705 SF3B2Q13435 895 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-206ENST00000505705 NFE2L2Q16236 605 aa10.81□□□□□ -0.68
LIMCH1-206ENST00000505705 ILDR2Q71H61 639 aa10.81□□□□□ -0.68
LIMCH1-206ENST00000505705 DCAF5Q96JK2 942 aa10.81□□□□□ -0.68
LIMCH1-206ENST00000505705 SALL2Q9Y467 1007 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-206ENST00000505705 BRWD3Q6RI45 1802 aa10.8□□□□□ -0.68
LIMCH1-206ENST00000505705 TRIM37O94972 964 aa10.8□□□□□ -0.68
LIMCH1-206ENST00000505705 TMPOP42166 694 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-206ENST00000505705 LMOD3Q0VAK6 560 aa10.8□□□□□ -0.68
LIMCH1-206ENST00000505705 MAP3K5Q99683 1374 aa10.79□□□□□ -0.68
LIMCH1-206ENST00000505705 RNMTO43148 476 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-206ENST00000505705 PRIM1P49642 420 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-206ENST00000505705 CABP4P57796 275 aa10.79□□□□□ -0.68
LIMCH1-206ENST00000505705 TEFQ10587 303 aa10.79□□□□□ -0.68
LIMCH1-206ENST00000505705 NKX1-1Q15270 411 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-206ENST00000505705 MCM10Q7L590 875 aa10.79□□□□□ -0.68
LIMCH1-206ENST00000505705 LGR6Q9HBX8 967 aa10.79□□□□□ -0.68
LIMCH1-206ENST00000505705 PKD1L3Q7Z443 1732 aa10.78□□□□□ -0.68
LIMCH1-206ENST00000505705 HTATSF1O43719 755 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-206ENST00000505705 DCTN1Q14203 1278 aa10.78□□□□□ -0.68
LIMCH1-206ENST00000505705 TMOD3Q9NYL9 352 aa10.78□□□□□ -0.68
LIMCH1-206ENST00000505705 ERVV-2B6SEH9 535 aa10.77□□□□□ -0.69
LIMCH1-206ENST00000505705 KCNQ2O43526 872 aa10.77□□□□□ -0.69
LIMCH1-206ENST00000505705 APBA3O96018 575 aa10.76□□□□□ -0.69
LIMCH1-206ENST00000505705 NFATC2IPQ8NCF5 419 aa10.76□□□□□ -0.69
LIMCH1-206ENST00000505705 IL17REQ8NFR9 667 aa10.76□□□□□ -0.69
LIMCH1-206ENST00000505705 BCL11BQ9C0K0 894 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-206ENST00000505705 SLC52A2Q9HAB3 445 aa10.76□□□□□ -0.69
LIMCH1-206ENST00000505705 LAS1LQ9Y4W2 734 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-206ENST00000505705 SHANK3Q9BYB0 1731 aa10.75□□□□□ -0.69
LIMCH1-206ENST00000505705 SLC4A2P04920 1241 aa10.75□□□□□ -0.69
LIMCH1-206ENST00000505705 CCDC125Q86Z20 511 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms