RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 MTHFSDQ2M296 383 aaKnown RBP13.68□□□□□ -0.22
TPM3-217ENST00000504663 WDR63Q8IWG1 891 aa13.68□□□□□ -0.22
TPM3-217ENST00000504663 PRDM11Q9NQV5 511 aa13.68□□□□□ -0.22
TPM3-217ENST00000504663 SLIT2O94813 1529 aa13.68□□□□□ -0.22
TPM3-217ENST00000504663 RNF123Q5XPI4 1314 aa13.67□□□□□ -0.22
TPM3-217ENST00000504663 WDR17Q8IZU2 1322 aa13.67□□□□□ -0.22
TPM3-217ENST00000504663 CRB1P82279 1406 aa13.67□□□□□ -0.22
TPM3-217ENST00000504663 IL16Q14005 1332 aa13.66□□□□□ -0.22
TPM3-217ENST00000504663 DISP2A7MBM2 1401 aa13.66□□□□□ -0.22
TPM3-217ENST00000504663 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.66□□□□□ -0.22
TPM3-217ENST00000504663 JCADQ9P266 1359 aa13.66□□□□□ -0.22
TPM3-217ENST00000504663 KDM3BQ7LBC6 1761 aa13.66□□□□□ -0.22
TPM3-217ENST00000504663 OVOS2A0A0G2JMS6 1433 aa13.65□□□□□ -0.22
TPM3-217ENST00000504663 E9PSI1 815 aa13.65□□□□□ -0.22
TPM3-217ENST00000504663 THUMPD2Q9BTF0 503 aaKnown RBP13.65□□□□□ -0.22
TPM3-217ENST00000504663 SCN11AQ9UI33 1791 aa13.65□□□□□ -0.22
TPM3-217ENST00000504663 ZNF853P0CG23 659 aa13.64□□□□□ -0.23
TPM3-217ENST00000504663 FANCIQ9NVI1 1328 aa13.64□□□□□ -0.23
TPM3-217ENST00000504663 CEMIPQ8WUJ3 1361 aa13.63□□□□□ -0.23
TPM3-217ENST00000504663 MAP3K5Q99683 1374 aa13.63□□□□□ -0.23
TPM3-217ENST00000504663 TOGARAM1Q9Y4F4 1720 aa13.63□□□□□ -0.23
TPM3-217ENST00000504663 MRC1P22897 1456 aa13.62□□□□□ -0.23
TPM3-217ENST00000504663 HOXD11P31277 338 aaPredicted RBP13.62□□□□□ -0.23
TPM3-217ENST00000504663 DCTN1Q14203 1278 aa13.62□□□□□ -0.23
TPM3-217ENST00000504663 GAS2L2Q8NHY3 880 aa13.62□□□□□ -0.23
TPM3-217ENST00000504663 HSPA1LP34931 641 aa13.61□□□□□ -0.23
TPM3-217ENST00000504663 LARP1Q6PKG0 1096 aaKnown RBP13.61□□□□□ -0.23
TPM3-217ENST00000504663 KDM6AO15550 1401 aaPredicted RBP13.61□□□□□ -0.23
TPM3-217ENST00000504663 GLI3P10071 1580 aa13.61□□□□□ -0.23
TPM3-217ENST00000504663 SLC4A2P04920 1241 aa13.6□□□□□ -0.23
TPM3-217ENST00000504663 HAP1P54257 671 aaPredicted RBP13.6□□□□□ -0.23
TPM3-217ENST00000504663 CARD10Q9BWT7 1032 aa13.6□□□□□ -0.23
TPM3-217ENST00000504663 NLRP2Q9NX02 1062 aa13.6□□□□□ -0.23
TPM3-217ENST00000504663 BTG4Q9NY30 223 aa13.6□□□□□ -0.23
TPM3-217ENST00000504663 HTATSF1O43719 755 aaKnown RBP13.59□□□□□ -0.23
TPM3-217ENST00000504663 LMOD3Q0VAK6 560 aa13.59□□□□□ -0.23
TPM3-217ENST00000504663 MCM10Q7L590 875 aa13.59□□□□□ -0.23
TPM3-217ENST00000504663 TSR2Q969E8 191 aaKnown RBP13.59□□□□□ -0.23
TPM3-217ENST00000504663 IFT57Q9NWB7 429 aa13.59□□□□□ -0.23
TPM3-217ENST00000504663 SUPT16HQ9Y5B9 1047 aaKnown RBP13.59□□□□□ -0.23
TPM3-217ENST00000504663 BCL9LQ86UU0 1499 aa13.59□□□□□ -0.23
TPM3-217ENST00000504663 PAPPAQ13219 1627 aa13.58□□□□□ -0.24
TPM3-217ENST00000504663 NEFMP07197 916 aa13.58□□□□□ -0.24
TPM3-217ENST00000504663 IL17REQ8NFR9 667 aa13.58□□□□□ -0.24
TPM3-217ENST00000504663 CSB-PGBD3P0DP91 1061 aa13.57□□□□□ -0.24
TPM3-217ENST00000504663 PRKCSHP14314 528 aaPredicted RBP13.57□□□□□ -0.24
TPM3-217ENST00000504663 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.57□□□□□ -0.243e-10■■■□□ 16.2
TPM3-217ENST00000504663 RCAN3Q9UKA8 241 aa13.57□□□□□ -0.24
TPM3-217ENST00000504663 SPATA31A6Q5VVP1 1343 aa13.57□□□□□ -0.24
TPM3-217ENST00000504663 GNAT3A8MTJ3 354 aa13.56□□□□□ -0.24
TPM3-217ENST00000504663 ADAMTS2O95450 1211 aa13.56□□□□□ -0.24
TPM3-217ENST00000504663 MYCNP04198 464 aaPredicted RBP13.56□□□□□ -0.24
TPM3-217ENST00000504663 AMOTQ4VCS5 1084 aa13.56□□□□□ -0.24
TPM3-217ENST00000504663 PLEKHO1Q53GL0 409 aaPredicted RBP13.56□□□□□ -0.24
TPM3-217ENST00000504663 AKAP4Q5JQC9 854 aa13.56□□□□□ -0.24
TPM3-217ENST00000504663 ZNF530Q6P9A1 599 aaPredicted RBP13.56□□□□□ -0.24
TPM3-217ENST00000504663 CFAP44Q96MT7 982 aa13.56□□□□□ -0.24
TPM3-217ENST00000504663 MYH16Q9H6N6 1097 aa13.56□□□□□ -0.24
TPM3-217ENST00000504663 MBIPQ9NS73 344 aa13.56□□□□□ -0.24
TPM3-217ENST00000504663 GTF3C3Q9Y5Q9 886 aa13.56□□□□□ -0.24
TPM3-217ENST00000504663 THSD7AQ9UPZ6 1657 aa13.56□□□□□ -0.24
TPM3-217ENST00000504663 CHL1O00533 1208 aa13.55□□□□□ -0.24
TPM3-217ENST00000504663 CYP27B1O15528 508 aa13.55□□□□□ -0.24
TPM3-217ENST00000504663 EXOSC9Q06265 439 aaKnown RBP13.55□□□□□ -0.24
TPM3-217ENST00000504663 TOM1L2Q6ZVM7 507 aa13.55□□□□□ -0.24
TPM3-217ENST00000504663 STRN4Q9NRL3 753 aa13.55□□□□□ -0.24
TPM3-217ENST00000504663 UBR2Q8IWV8 1755 aa13.54□□□□□ -0.24
TPM3-217ENST00000504663 NUTM2BA6NNL0 878 aaPredicted RBP13.54□□□□□ -0.24
TPM3-217ENST00000504663 NUTM2EB1AL46 878 aaPredicted RBP13.54□□□□□ -0.24
TPM3-217ENST00000504663 PHKG2P15735 406 aa13.54□□□□□ -0.24
TPM3-217ENST00000504663 TATP17735 454 aaPredicted RBP13.54□□□□□ -0.24
TPM3-217ENST00000504663 RRP1P56182 461 aaKnown RBP13.54□□□□□ -0.24
TPM3-217ENST00000504663 GNAI1P63096 354 aa13.54□□□□□ -0.24
TPM3-217ENST00000504663 NUTM2AQ8IVF1 878 aaPredicted RBP13.54□□□□□ -0.24
TPM3-217ENST00000504663 RAPGEF4Q8WZA2 1011 aa13.54□□□□□ -0.24
TPM3-217ENST00000504663 LGR6Q9HBX8 967 aa13.54□□□□□ -0.24
TPM3-217ENST00000504663 RNMTO43148 476 aaKnown RBP13.53□□□□□ -0.24
TPM3-217ENST00000504663 CALD1Q05682 793 aaKnown RBP13.53□□□□□ -0.24
TPM3-217ENST00000504663 FNBP4Q8N3X1 1017 aaPredicted RBP13.53□□□□□ -0.24
TPM3-217ENST00000504663 SPATA31A1Q5TZJ5 1347 aa13.53□□□□□ -0.24
TPM3-217ENST00000504663 TNS2Q63HR2 1409 aa13.53□□□□□ -0.24
TPM3-217ENST00000504663 C5P01031 1676 aa13.53□□□□□ -0.24
TPM3-217ENST00000504663 SPATA31A5Q5VU36 1347 aa13.52□□□□□ -0.25
TPM3-217ENST00000504663 SPATA31A7Q8IWB4 1347 aa13.52□□□□□ -0.25
TPM3-217ENST00000504663 ITGB4P16144 1822 aa13.51□□□□□ -0.25
TPM3-217ENST00000504663 DOT1LQ8TEK3 1739 aa13.51□□□□□ -0.25
TPM3-217ENST00000504663 IL2RBP14784 551 aa13.51□□□□□ -0.25
TPM3-217ENST00000504663 RARSP54136 660 aaKnown RBP13.51□□□□□ -0.25
TPM3-217ENST00000504663 TSPYL6Q8N831 410 aa13.51□□□□□ -0.25
TPM3-217ENST00000504663 BCAR3O75815 825 aa13.5□□□□□ -0.25
TPM3-217ENST00000504663 CT47B1P0C2W7 299 aaPredicted RBP13.5□□□□□ -0.25
TPM3-217ENST00000504663 NKX1-1Q15270 411 aaPredicted RBP13.5□□□□□ -0.25
TPM3-217ENST00000504663 KRT24Q2M2I5 525 aa13.5□□□□□ -0.25
TPM3-217ENST00000504663 MPRIPQ6WCQ1 1025 aa13.5□□□□□ -0.25
TPM3-217ENST00000504663 C8orf58Q8NAV2 365 aa13.5□□□□□ -0.25
TPM3-217ENST00000504663 ATRNO75882 1429 aa13.49□□□□□ -0.25
TPM3-217ENST00000504663 HEG1Q9ULI3 1381 aa13.49□□□□□ -0.25
TPM3-217ENST00000504663 VAMP4O75379 141 aa13.49□□□□□ -0.25
TPM3-217ENST00000504663 EVA1CP58658 441 aa13.49□□□□□ -0.25
TPM3-217ENST00000504663 RTF1Q92541 710 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms