RNA–Protein interactions for RNA: ENST00000503274.1

NIPBL-203, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 5

Gene NIPBL, Length 789 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-203ENST00000503274 DEPDC4Q8N2C3 294 aa11.42□□□□□ -0.58
NIPBL-203ENST00000503274 SIRT1Q96EB6 747 aa11.42□□□□□ -0.58
NIPBL-203ENST00000503274 USP17L3A6NCW0 530 aa11.41□□□□□ -0.58
NIPBL-203ENST00000503274 USP17L4A6NCW7 530 aa11.41□□□□□ -0.58
NIPBL-203ENST00000503274 LMOD1P29536 600 aaPredicted RBP11.41□□□□□ -0.58
NIPBL-203ENST00000503274 ADD1P35611 737 aaKnown RBP11.41□□□□□ -0.58
NIPBL-203ENST00000503274 CBLBQ13191 982 aa11.41□□□□□ -0.58
NIPBL-203ENST00000503274 NCOA4Q13772 614 aa11.41□□□□□ -0.58
NIPBL-203ENST00000503274 USP17L2Q6R6M4 530 aa11.41□□□□□ -0.58
NIPBL-203ENST00000503274 Q6ZVU0 165 aa11.41□□□□□ -0.58
NIPBL-203ENST00000503274 USP17L1Q7RTZ2 530 aa11.41□□□□□ -0.58
NIPBL-203ENST00000503274 CFAP70Q5T0N1 1121 aa11.4□□□□□ -0.58
NIPBL-203ENST00000503274 MEIOBQ8N635 442 aa11.38□□□□□ -0.59
NIPBL-203ENST00000503274 NOD1Q9Y239 953 aa11.38□□□□□ -0.59
NIPBL-203ENST00000503274 ADH1AP07327 375 aa11.37□□□□□ -0.59
NIPBL-203ENST00000503274 RFX1P22670 979 aa11.37□□□□□ -0.59
NIPBL-203ENST00000503274 OSBPL3Q9H4L5 887 aa11.37□□□□□ -0.59
NIPBL-203ENST00000503274 CYP2U1Q7Z449 544 aa11.36□□□□□ -0.59
NIPBL-203ENST00000503274 MKRN1Q9UHC7 482 aaKnown RBP11.36□□□□□ -0.59
NIPBL-203ENST00000503274 ATP5J2-PTCD1G3V325 749 aa11.34□□□□□ -0.59
NIPBL-203ENST00000503274 UPP2O95045 317 aa11.34□□□□□ -0.59
NIPBL-203ENST00000503274 TRIM50Q86XT4 487 aa11.34□□□□□ -0.59
NIPBL-203ENST00000503274 AGBL1Q96MI9 1066 aa11.34□□□□□ -0.59
NIPBL-203ENST00000503274 TSEN34Q9BSV6 310 aaKnown RBP11.34□□□□□ -0.59
NIPBL-203ENST00000503274 KANK4Q5T7N3 995 aaPredicted RBP11.33□□□□□ -0.6
NIPBL-203ENST00000503274 MRPL14Q6P1L8 145 aaKnown RBP11.33□□□□□ -0.6
NIPBL-203ENST00000503274 KDF1Q8NAX2 398 aaPredicted RBP11.33□□□□□ -0.6
NIPBL-203ENST00000503274 ARID3AQ99856 593 aa11.33□□□□□ -0.6
NIPBL-203ENST00000503274 VRTNQ9H8Y1 702 aa11.33□□□□□ -0.6
NIPBL-203ENST00000503274 PTGIRP43119 386 aa11.32□□□□□ -0.6
NIPBL-203ENST00000503274 GTF2IP78347 998 aa11.32□□□□□ -0.6
NIPBL-203ENST00000503274 RELBQ01201 579 aa11.32□□□□□ -0.6
NIPBL-203ENST00000503274 LINC00528Q8N1L1 170 aa11.32□□□□□ -0.6
NIPBL-203ENST00000503274 GMPR2Q9P2T1 348 aaKnown RBP11.32□□□□□ -0.6
NIPBL-203ENST00000503274 PCDHGA11Q9Y5H2 935 aa11.32□□□□□ -0.6
NIPBL-203ENST00000503274 GNRH1P01148 92 aa11.31□□□□□ -0.6
NIPBL-203ENST00000503274 BMP1P13497 986 aa11.31□□□□□ -0.6
NIPBL-203ENST00000503274 ATP1A2P50993 1020 aa11.31□□□□□ -0.6
NIPBL-203ENST00000503274 SCARF1Q14162 830 aa11.31□□□□□ -0.6
NIPBL-203ENST00000503274 TRIM46Q7Z4K8 759 aa11.31□□□□□ -0.6
NIPBL-203ENST00000503274 ATP13A2Q9NQ11 1180 aa11.31□□□□□ -0.6
NIPBL-203ENST00000503274 BMP2P12643 396 aa11.29□□□□□ -0.6
NIPBL-203ENST00000503274 RASA1P20936 1047 aa11.29□□□□□ -0.6
NIPBL-203ENST00000503274 C6orf118Q5T5N4 469 aa11.29□□□□□ -0.6
NIPBL-203ENST00000503274 OGFOD1Q8N543 542 aa11.29□□□□□ -0.6
NIPBL-203ENST00000503274 PURBQ96QR8 312 aaKnown RBP11.29□□□□□ -0.6
NIPBL-203ENST00000503274 ZNF395Q9H8N7 513 aaPredicted RBP11.29□□□□□ -0.6
NIPBL-203ENST00000503274 DNAAF2Q9NVR5 837 aaKnown RBP11.29□□□□□ -0.6
NIPBL-203ENST00000503274 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.28□□□□□ -0.6
NIPBL-203ENST00000503274 SRPK2P78362 688 aaKnown RBP11.28□□□□□ -0.6
NIPBL-203ENST00000503274 CLDN10P78369 228 aa11.28□□□□□ -0.6
NIPBL-203ENST00000503274 PSME1Q06323 249 aa11.28□□□□□ -0.6
NIPBL-203ENST00000503274 CDCA8Q53HL2 280 aa11.28□□□□□ -0.6
NIPBL-203ENST00000503274 LARP1Q6PKG0 1096 aaKnown RBP11.28□□□□□ -0.6
NIPBL-203ENST00000503274 PBXIP1Q96AQ6 731 aa11.28□□□□□ -0.6
NIPBL-203ENST00000503274 A0A1W2PRU2 124 aa11.27□□□□□ -0.61
NIPBL-203ENST00000503274 ZBTB7BO15156 539 aaPredicted RBP11.27□□□□□ -0.61
NIPBL-203ENST00000503274 SPINT1O43278 529 aa11.27□□□□□ -0.61
NIPBL-203ENST00000503274 LARGE2Q8N3Y3 721 aa11.27□□□□□ -0.61
NIPBL-203ENST00000503274 ZFP42Q96MM3 310 aa11.27□□□□□ -0.61
NIPBL-203ENST00000503274 ARHGEF10LQ9HCE6 1279 aa11.27□□□□□ -0.61
NIPBL-203ENST00000503274 ESCO1Q5FWF5 840 aa11.26□□□□□ -0.61
NIPBL-203ENST00000503274 RAB6BQ9NRW1 208 aa11.26□□□□□ -0.61
NIPBL-203ENST00000503274 STAU1O95793 577 aaKnown RBP11.25□□□□□ -0.61
NIPBL-203ENST00000503274 GDF10P55107 478 aa11.25□□□□□ -0.61
NIPBL-203ENST00000503274 CRTC2Q53ET0 693 aaPredicted RBP11.25□□□□□ -0.61
NIPBL-203ENST00000503274 ETNK1Q9HBU6 452 aa11.25□□□□□ -0.61
NIPBL-203ENST00000503274 KIAA1024Q9UPX6 916 aa11.25□□□□□ -0.61
NIPBL-203ENST00000503274 FAM196BA6NMK8 535 aa11.24□□□□□ -0.61
NIPBL-203ENST00000503274 MEN1O00255 615 aa11.24□□□□□ -0.61
NIPBL-203ENST00000503274 SCNN1DP51172 638 aa11.24□□□□□ -0.61
NIPBL-203ENST00000503274 CLN3Q13286 438 aa11.24□□□□□ -0.61
NIPBL-203ENST00000503274 CCDC102BQ68D86 513 aa11.24□□□□□ -0.61
NIPBL-203ENST00000503274 ZNF594Q96JF6 807 aaPredicted RBP11.24□□□□□ -0.61
NIPBL-203ENST00000503274 INSM2Q96T92 566 aaPredicted RBP11.24□□□□□ -0.61
NIPBL-203ENST00000503274 C11orf95C9JLR9 678 aaPredicted RBP11.23□□□□□ -0.61
NIPBL-203ENST00000503274 PPP1R15AO75807 674 aaPredicted RBP11.23□□□□□ -0.61
NIPBL-203ENST00000503274 INHAP05111 366 aa11.23□□□□□ -0.61
NIPBL-203ENST00000503274 PTK7Q13308 1070 aa11.23□□□□□ -0.61
NIPBL-203ENST00000503274 TPCN2Q8NHX9 752 aa11.23□□□□□ -0.61
NIPBL-203ENST00000503274 CNKSR1Q969H4 720 aa11.23□□□□□ -0.61
NIPBL-203ENST00000503274 XAGE2Q96GT9 111 aa11.23□□□□□ -0.61
NIPBL-203ENST00000503274 NLRP3Q96P20 1036 aa11.23□□□□□ -0.61
NIPBL-203ENST00000503274 ESYT1Q9BSJ8 1104 aa11.23□□□□□ -0.61
NIPBL-203ENST00000503274 TMEM229AB2RXF0 380 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 USP17L15C9J2P7 530 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 USP17L10C9JJH3 530 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 USP17L13C9JLJ4 530 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 USP17L12C9JPN9 530 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 USP17L11C9JVI0 530 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 USP17L21D6R901 530 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 USP17L18D6R9N7 530 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 USP17L22D6RA61 530 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 USP17L17D6RBQ6 530 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 USP17L19D6RCP7 530 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 USP17L20D6RJB6 530 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 WASLO00401 505 aaPredicted RBP11.22□□□□□ -0.61
NIPBL-203ENST00000503274 IL2RAP01589 272 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 USP17L24Q0WX57 530 aa11.22□□□□□ -0.61
NIPBL-203ENST00000503274 SIX5Q8N196 739 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms