RNA–Protein interactions for RNA: ENST00000498495.1

HSPG2-213, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 488 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-213ENST00000498495 KCNQ2O43526 872 aa17.35■□□□□ 0.37
HSPG2-213ENST00000498495 PTF1AQ7RTS3 328 aa17.35■□□□□ 0.37
HSPG2-213ENST00000498495 PLSCR1O15162 318 aa17.34■□□□□ 0.37
HSPG2-213ENST00000498495 MEGF6O75095 1541 aa17.34■□□□□ 0.37
HSPG2-213ENST00000498495 TNS1Q9HBL0 1735 aaKnown RBP17.33■□□□□ 0.36
HSPG2-213ENST00000498495 PARD3Q8TEW0 1356 aa17.32■□□□□ 0.36
HSPG2-213ENST00000498495 SPG7Q9UQ90 795 aa17.32■□□□□ 0.36
HSPG2-213ENST00000498495 SYTL4Q96C24 671 aaPredicted RBP17.31■□□□□ 0.36
HSPG2-213ENST00000498495 SBF2Q86WG5 1849 aa17.31■□□□□ 0.36
HSPG2-213ENST00000498495 IGSF1Q8N6C5 1336 aa17.3■□□□□ 0.36
HSPG2-213ENST00000498495 PCDH11XQ9BZA7 1347 aa17.3■□□□□ 0.36
HSPG2-213ENST00000498495 PCDH11YQ9BZA8 1340 aa17.3■□□□□ 0.36
HSPG2-213ENST00000498495 IL13P35225 146 aa17.3■□□□□ 0.36
HSPG2-213ENST00000498495 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.3■□□□□ 0.36
HSPG2-213ENST00000498495 PRIM1P49642 420 aaKnown RBP17.29■□□□□ 0.36
HSPG2-213ENST00000498495 NBPF14Q5TI25 921 aa17.29■□□□□ 0.36
HSPG2-213ENST00000498495 NCAPD2Q15021 1401 aa17.29■□□□□ 0.36
HSPG2-213ENST00000498495 CYP27B1O15528 508 aa17.28■□□□□ 0.36
HSPG2-213ENST00000498495 DIAPH1O60610 1272 aaKnown RBP17.28■□□□□ 0.36
HSPG2-213ENST00000498495 SULT6B1Q6IMI4 303 aa17.28■□□□□ 0.36
HSPG2-213ENST00000498495 KAT6BQ8WYB5 2073 aa17.28■□□□□ 0.36
HSPG2-213ENST00000498495 DDX10Q13206 875 aaKnown RBP17.27■□□□□ 0.36
HSPG2-213ENST00000498495 PLEKHO1Q53GL0 409 aaPredicted RBP17.27■□□□□ 0.36
HSPG2-213ENST00000498495 TXNRD1Q16881 649 aa17.26■□□□□ 0.35
HSPG2-213ENST00000498495 IFNL2Q8IZJ0 200 aa17.26■□□□□ 0.35
HSPG2-213ENST00000498495 PROM2Q8N271 834 aa17.26■□□□□ 0.35
HSPG2-213ENST00000498495 PSDA5PKW4 1024 aaPredicted RBP17.25■□□□□ 0.35
HSPG2-213ENST00000498495 AEBP1Q8IUX7 1158 aa17.25■□□□□ 0.35
HSPG2-213ENST00000498495 CFAP53Q96M91 514 aa17.25■□□□□ 0.35
HSPG2-213ENST00000498495 PPP2R1AP30153 589 aa17.24■□□□□ 0.35
HSPG2-213ENST00000498495 R3HDM1Q15032 1099 aaKnown RBP17.24■□□□□ 0.35
HSPG2-213ENST00000498495 NKX1-1Q15270 411 aaPredicted RBP17.24■□□□□ 0.35
HSPG2-213ENST00000498495 AMOTQ4VCS5 1084 aa17.24■□□□□ 0.35
HSPG2-213ENST00000498495 PHKG2P15735 406 aa17.23■□□□□ 0.35
HSPG2-213ENST00000498495 NHSQ6T4R5 1651 aa17.23■□□□□ 0.35
HSPG2-213ENST00000498495 SHANK3Q9BYB0 1731 aa17.22■□□□□ 0.35
HSPG2-213ENST00000498495 U2SURPO15042 1029 aaKnown RBP17.22■□□□□ 0.35
HSPG2-213ENST00000498495 HMOX1P09601 288 aa17.22■□□□□ 0.35
HSPG2-213ENST00000498495 MPRIPQ6WCQ1 1025 aa17.22■□□□□ 0.35
HSPG2-213ENST00000498495 PLEKHG2Q9H7P9 1386 aa17.21■□□□□ 0.35
HSPG2-213ENST00000498495 HSP90AB1P08238 724 aaKnown RBP17.2■□□□□ 0.34
HSPG2-213ENST00000498495 ZNF530Q6P9A1 599 aaPredicted RBP17.2■□□□□ 0.34
HSPG2-213ENST00000498495 NUDCQ9Y266 331 aa17.2■□□□□ 0.34
HSPG2-213ENST00000498495 KDRP35968 1356 aa17.19■□□□□ 0.34
HSPG2-213ENST00000498495 C1orf141Q5JVX7 400 aa17.19■□□□□ 0.34
HSPG2-213ENST00000498495 PKD1L3Q7Z443 1732 aa17.18■□□□□ 0.34
HSPG2-213ENST00000498495 RREB1Q92766 1687 aa17.18■□□□□ 0.34
HSPG2-213ENST00000498495 STK32BQ9NY57 414 aa17.18■□□□□ 0.34
HSPG2-213ENST00000498495 BTAF1O14981 1849 aa17.18■□□□□ 0.34
HSPG2-213ENST00000498495 RGPD3A6NKT7 1758 aaPredicted RBP17.17■□□□□ 0.34
HSPG2-213ENST00000498495 RGPD4Q7Z3J3 1758 aa17.17■□□□□ 0.34
HSPG2-213ENST00000498495 SLC27A3Q5K4L6 730 aa17.17■□□□□ 0.34
HSPG2-213ENST00000498495 DOT1LQ8TEK3 1739 aa17.17■□□□□ 0.34
HSPG2-213ENST00000498495 DCAF5Q96JK2 942 aa17.17■□□□□ 0.34
HSPG2-213ENST00000498495 TMOD3Q9NYL9 352 aa17.17■□□□□ 0.34
HSPG2-213ENST00000498495 RALBP1Q15311 655 aa17.16■□□□□ 0.34
HSPG2-213ENST00000498495 PIGBQ92521 554 aa17.16■□□□□ 0.34
HSPG2-213ENST00000498495 NUP188Q5SRE5 1749 aa17.16■□□□□ 0.34
HSPG2-213ENST00000498495 ERVV-2B6SEH9 535 aa17.15■□□□□ 0.34
HSPG2-213ENST00000498495 SLC15A2Q16348 729 aa17.15■□□□□ 0.34
HSPG2-213ENST00000498495 SMARCC1Q92922 1105 aaPredicted RBP17.15■□□□□ 0.34
HSPG2-213ENST00000498495 LRRC4BQ9NT99 713 aa17.15■□□□□ 0.34
HSPG2-213ENST00000498495 COL3A1P02461 1466 aaPredicted RBP17.14■□□□□ 0.33
HSPG2-213ENST00000498495 AKAP4Q5JQC9 854 aa17.14■□□□□ 0.33
HSPG2-213ENST00000498495 ANO8Q9HCE9 1232 aaPredicted RBP17.14■□□□□ 0.33
HSPG2-213ENST00000498495 CCNL1Q9UK58 526 aaPredicted RBP17.14■□□□□ 0.33
HSPG2-213ENST00000498495 U2AF1L5P0DN76 240 aaPredicted RBP17.13■□□□□ 0.33
HSPG2-213ENST00000498495 HMGB2P26583 209 aaKnown RBP17.13■□□□□ 0.33
HSPG2-213ENST00000498495 KCNQ4P56696 695 aa17.13■□□□□ 0.33
HSPG2-213ENST00000498495 CABP4P57796 275 aa17.13■□□□□ 0.33
HSPG2-213ENST00000498495 U2AF1Q01081 240 aaKnown RBP eCLIP17.13■□□□□ 0.33
HSPG2-213ENST00000498495 MTHFSDQ2M296 383 aaKnown RBP17.12■□□□□ 0.33
HSPG2-213ENST00000498495 ZNF316A6NFI3 1004 aaPredicted RBP17.11■□□□□ 0.33
HSPG2-213ENST00000498495 PALLDQ8WX93 1383 aa17.11■□□□□ 0.33
HSPG2-213ENST00000498495 ASAP1Q9ULH1 1129 aa17.1■□□□□ 0.33
HSPG2-213ENST00000498495 FCHSD2O94868 740 aa17.09■□□□□ 0.33
HSPG2-213ENST00000498495 PRKAR2BP31323 418 aa17.09■□□□□ 0.33
HSPG2-213ENST00000498495 NFATC2IPQ8NCF5 419 aa17.09■□□□□ 0.33
HSPG2-213ENST00000498495 GAS2L2Q8NHY3 880 aa17.09■□□□□ 0.33
HSPG2-213ENST00000498495 RSPH6AQ9H0K4 717 aa17.09■□□□□ 0.33
HSPG2-213ENST00000498495 ATG3Q9NT62 314 aa17.09■□□□□ 0.33
HSPG2-213ENST00000498495 ITGB4P16144 1822 aa17.09■□□□□ 0.33
HSPG2-213ENST00000498495 TOGARAM1Q9Y4F4 1720 aa17.08■□□□□ 0.32
HSPG2-213ENST00000498495 ZNF827Q17R98 1081 aa17.08■□□□□ 0.32
HSPG2-213ENST00000498495 AKT1S1Q96B36 256 aa17.08■□□□□ 0.32
HSPG2-213ENST00000498495 LGR6Q9HBX8 967 aa17.08■□□□□ 0.32
HSPG2-213ENST00000498495 KDM6AO15550 1401 aaPredicted RBP17.07■□□□□ 0.32
HSPG2-213ENST00000498495 RNMTO43148 476 aaKnown RBP17.07■□□□□ 0.32
HSPG2-213ENST00000498495 PHACTR3Q96KR7 559 aa17.07■□□□□ 0.32
HSPG2-213ENST00000498495 TFCP2L1Q9NZI6 479 aa17.07■□□□□ 0.32
HSPG2-213ENST00000498495 LOC102724428A0A0B4J2F2 783 aa17.06■□□□□ 0.32
HSPG2-213ENST00000498495 NEFMP07197 916 aa17.06■□□□□ 0.32
HSPG2-213ENST00000498495 ATP6V1AP38606 617 aa17.06■□□□□ 0.32
HSPG2-213ENST00000498495 SIK1P57059 783 aa17.06■□□□□ 0.32
HSPG2-213ENST00000498495 PDGFDQ9GZP0 370 aaPredicted RBP17.06■□□□□ 0.32
HSPG2-213ENST00000498495 SPON1Q9HCB6 807 aa17.06■□□□□ 0.32
HSPG2-213ENST00000498495 LY75O60449 1722 aa17.06■□□□□ 0.32
HSPG2-213ENST00000498495 MYBBP1AQ9BQG0 1328 aaKnown RBP17.05■□□□□ 0.32
HSPG2-213ENST00000498495 GNAT3A8MTJ3 354 aa17.05■□□□□ 0.32
HSPG2-213ENST00000498495 RBM42Q9BTD8 480 aaKnown RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms