RNA–Protein interactions for RNA: ENST00000498212.1

HMGXB4-207, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 778 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-207ENST00000498212 PTF1AQ7RTS3 328 aa11.74□□□□□ -0.53
HMGXB4-207ENST00000498212 SPINK5Q9NQ38 1064 aaPredicted RBP11.74□□□□□ -0.53
HMGXB4-207ENST00000498212 SMG6Q86US8 1419 aaKnown RBP11.74□□□□□ -0.53
HMGXB4-207ENST00000498212 FLT4P35916 1363 aa11.73□□□□□ -0.53
HMGXB4-207ENST00000498212 KIF24Q5T7B8 1368 aa11.73□□□□□ -0.53
HMGXB4-207ENST00000498212 INSRP06213 1382 aa11.72□□□□□ -0.53
HMGXB4-207ENST00000498212 CGNL1Q0VF96 1302 aa11.72□□□□□ -0.53
HMGXB4-207ENST00000498212 ACSBG1Q96GR2 724 aa11.72□□□□□ -0.53
HMGXB4-207ENST00000498212 MEGF6O75095 1541 aa11.71□□□□□ -0.53
HMGXB4-207ENST00000498212 KCNQ2O43526 872 aa11.71□□□□□ -0.53
HMGXB4-207ENST00000498212 CASZ1Q86V15 1759 aa11.71□□□□□ -0.54
HMGXB4-207ENST00000498212 DSG3P32926 999 aa11.7□□□□□ -0.54
HMGXB4-207ENST00000498212 HSP90AB2PQ58FF8 381 aa11.7□□□□□ -0.54
HMGXB4-207ENST00000498212 NBPF6Q5VWK0 638 aa11.7□□□□□ -0.54
HMGXB4-207ENST00000498212 DDX54Q8TDD1 881 aaKnown RBP11.7□□□□□ -0.54
HMGXB4-207ENST00000498212 NBPF4Q96M43 638 aa11.7□□□□□ -0.54
HMGXB4-207ENST00000498212 PKD1L3Q7Z443 1732 aa11.69□□□□□ -0.54
HMGXB4-207ENST00000498212 PROM2Q8N271 834 aa11.69□□□□□ -0.54
HMGXB4-207ENST00000498212 USHBP1Q8N6Y0 703 aa11.69□□□□□ -0.54
HMGXB4-207ENST00000498212 EMILIN1Q9Y6C2 1016 aa11.69□□□□□ -0.54
HMGXB4-207ENST00000498212 LY75O60449 1722 aa11.69□□□□□ -0.54
HMGXB4-207ENST00000498212 CAPN15O75808 1086 aa11.68□□□□□ -0.54
HMGXB4-207ENST00000498212 TXNRD1Q16881 649 aa11.68□□□□□ -0.54
HMGXB4-207ENST00000498212 ZCRB1Q8TBF4 217 aaKnown RBP11.68□□□□□ -0.54
HMGXB4-207ENST00000498212 RAPGEF4Q8WZA2 1011 aa11.68□□□□□ -0.54
HMGXB4-207ENST00000498212 PAPPAQ13219 1627 aa11.68□□□□□ -0.54
HMGXB4-207ENST00000498212 ITGB4P16144 1822 aa11.67□□□□□ -0.54
HMGXB4-207ENST00000498212 PPM1GO15355 546 aaPredicted RBP11.67□□□□□ -0.54
HMGXB4-207ENST00000498212 PANK3Q9H999 370 aa11.67□□□□□ -0.54
HMGXB4-207ENST00000498212 ANO8Q9HCE9 1232 aaPredicted RBP11.67□□□□□ -0.54
HMGXB4-207ENST00000498212 QSER1Q2KHR3 1735 aa11.66□□□□□ -0.54
HMGXB4-207ENST00000498212 TATP17735 454 aaPredicted RBP11.66□□□□□ -0.54
HMGXB4-207ENST00000498212 SRCAPQ6ZRS2 3230 aa11.66□□□□□ -0.54
HMGXB4-207ENST00000498212 NSD2O96028 1365 aa11.66□□□□□ -0.54
HMGXB4-207ENST00000498212 TUBGCP6Q96RT7 1819 aa11.65□□□□□ -0.54
HMGXB4-207ENST00000498212 WASHC2AQ641Q2 1341 aa11.65□□□□□ -0.54
HMGXB4-207ENST00000498212 STK32BQ9NY57 414 aa11.65□□□□□ -0.54
HMGXB4-207ENST00000498212 POLKQ9UBT6 870 aa11.65□□□□□ -0.54
HMGXB4-207ENST00000498212 NCAPD2Q15021 1401 aa11.65□□□□□ -0.54
HMGXB4-207ENST00000498212 TOGARAM1Q9Y4F4 1720 aa11.65□□□□□ -0.54
HMGXB4-207ENST00000498212 TNNT2P45379 298 aaPredicted RBP11.64□□□□□ -0.55
HMGXB4-207ENST00000498212 SYTL4Q96C24 671 aaPredicted RBP11.64□□□□□ -0.55
HMGXB4-207ENST00000498212 SPON1Q9HCB6 807 aa11.64□□□□□ -0.55
HMGXB4-207ENST00000498212 PCDH11XQ9BZA7 1347 aa11.63□□□□□ -0.55
HMGXB4-207ENST00000498212 PCDH11YQ9BZA8 1340 aa11.63□□□□□ -0.55
HMGXB4-207ENST00000498212 TAF1LQ8IZX4 1826 aa11.63□□□□□ -0.55
HMGXB4-207ENST00000498212 PRIM1P49642 420 aaKnown RBP11.63□□□□□ -0.55
HMGXB4-207ENST00000498212 SLC15A2Q16348 729 aa11.63□□□□□ -0.55
HMGXB4-207ENST00000498212 KIF7Q2M1P5 1343 aa11.62□□□□□ -0.55
HMGXB4-207ENST00000498212 EYA1Q99502 592 aa11.62□□□□□ -0.55
HMGXB4-207ENST00000498212 C5P01031 1676 aa11.62□□□□□ -0.55
HMGXB4-207ENST00000498212 SLC27A3Q5K4L6 730 aa11.61□□□□□ -0.55
HMGXB4-207ENST00000498212 POTEHQ6S545 545 aa11.61□□□□□ -0.55
HMGXB4-207ENST00000498212 PDGFDQ9GZP0 370 aaPredicted RBP11.61□□□□□ -0.55
HMGXB4-207ENST00000498212 PPP1R1BQ9UD71 204 aaPredicted RBP11.61□□□□□ -0.55
HMGXB4-207ENST00000498212 KNSTRNQ9Y448 316 aa11.61□□□□□ -0.55
HMGXB4-207ENST00000498212 EIF4A2Q14240 407 aaKnown RBP11.6□□□□□ -0.55
HMGXB4-207ENST00000498212 MORC1Q86VD1 984 aa11.6□□□□□ -0.55
HMGXB4-207ENST00000498212 LRRC4BQ9NT99 713 aa11.6□□□□□ -0.55
HMGXB4-207ENST00000498212 CYP27B1O15528 508 aa11.59□□□□□ -0.55
HMGXB4-207ENST00000498212 ZBTB7AO95365 584 aa11.59□□□□□ -0.55
HMGXB4-207ENST00000498212 SPG7Q9UQ90 795 aa11.59□□□□□ -0.55
HMGXB4-207ENST00000498212 VIRMAQ69YN4 1812 aaKnown RBP11.58□□□□□ -0.56
HMGXB4-207ENST00000498212 COL24A1Q17RW2 1714 aa11.58□□□□□ -0.56
HMGXB4-207ENST00000498212 ZNF827Q17R98 1081 aa11.58□□□□□ -0.56
HMGXB4-207ENST00000498212 IGSF1Q8N6C5 1336 aa11.58□□□□□ -0.56
HMGXB4-207ENST00000498212 KCNQ4P56696 695 aa11.57□□□□□ -0.56
HMGXB4-207ENST00000498212 AMER1Q5JTC6 1135 aaPredicted RBP11.57□□□□□ -0.56
HMGXB4-207ENST00000498212 AKT1S1Q96B36 256 aa11.57□□□□□ -0.56
HMGXB4-207ENST00000498212 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.57□□□□□ -0.56
HMGXB4-207ENST00000498212 CCNL1Q9UK58 526 aaPredicted RBP11.57□□□□□ -0.56
HMGXB4-207ENST00000498212 ATF5Q9Y2D1 282 aaPredicted RBP11.57□□□□□ -0.56
HMGXB4-207ENST00000498212 PLEKHG2Q9H7P9 1386 aa11.56□□□□□ -0.56
HMGXB4-207ENST00000498212 NKX1-1Q15270 411 aaPredicted RBP11.56□□□□□ -0.56
HMGXB4-207ENST00000498212 MPRIPQ6WCQ1 1025 aa11.56□□□□□ -0.56
HMGXB4-207ENST00000498212 MTFR1LQ9H019 292 aa11.56□□□□□ -0.56
HMGXB4-207ENST00000498212 PALLDQ8WX93 1383 aa11.55□□□□□ -0.56
HMGXB4-207ENST00000498212 SLC4A2P04920 1241 aa11.55□□□□□ -0.56
HMGXB4-207ENST00000498212 KCNA4P22459 653 aa11.55□□□□□ -0.56
HMGXB4-207ENST00000498212 PTGER2P43116 358 aa11.55□□□□□ -0.56
HMGXB4-207ENST00000498212 IFNL2Q8IZJ0 200 aa11.55□□□□□ -0.56
HMGXB4-207ENST00000498212 C4BP0C0L5 1744 aa11.55□□□□□ -0.56
HMGXB4-207ENST00000498212 PER1O15534 1290 aaPredicted RBP11.54□□□□□ -0.56
HMGXB4-207ENST00000498212 PHKG2P15735 406 aa11.54□□□□□ -0.56
HMGXB4-207ENST00000498212 TFCP2L1Q9NZI6 479 aa11.54□□□□□ -0.56
HMGXB4-207ENST00000498212 UBR3Q6ZT12 1888 aa11.54□□□□□ -0.56
HMGXB4-207ENST00000498212 PNPLA7Q6ZV29 1317 aa11.54□□□□□ -0.56
HMGXB4-207ENST00000498212 SCN11AQ9UI33 1791 aa11.54□□□□□ -0.56
HMGXB4-207ENST00000498212 HMGB2P26583 209 aaKnown RBP11.53□□□□□ -0.56
HMGXB4-207ENST00000498212 PIGBQ92521 554 aa11.53□□□□□ -0.56
HMGXB4-207ENST00000498212 SMARCC1Q92922 1105 aaPredicted RBP11.53□□□□□ -0.56
HMGXB4-207ENST00000498212 PLEKHO1Q53GL0 409 aaPredicted RBP11.52□□□□□ -0.57
HMGXB4-207ENST00000498212 CC2D1BQ5T0F9 858 aaKnown RBP11.52□□□□□ -0.57
HMGXB4-207ENST00000498212 SLC16A10Q8TF71 515 aa11.52□□□□□ -0.57
HMGXB4-207ENST00000498212 SGIP1Q9BQI5 828 aa11.52□□□□□ -0.57
HMGXB4-207ENST00000498212 TMOD3Q9NYL9 352 aa11.52□□□□□ -0.57
HMGXB4-207ENST00000498212 ZNF831Q5JPB2 1677 aa11.52□□□□□ -0.57
HMGXB4-207ENST00000498212 IL13P35225 146 aa11.51□□□□□ -0.57
HMGXB4-207ENST00000498212 MTHFSP49914 203 aa11.51□□□□□ -0.57
HMGXB4-207ENST00000498212 AMOTQ4VCS5 1084 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms