RNA–Protein interactions for RNA: ENST00000497977.1

PTPRN-218, Transcript of protein tyrosine phosphatase, receptor type N, human

TSL 3

Gene PTPRN, Length 701 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRN-218	ENST00000497977	PLEKHG2	Q9H7P9	1386 aa		13.96	□□□□□ -0.17
PTPRN-218	ENST00000497977	USP54	Q70EL1	1684 aa		13.95	□□□□□ -0.18
PTPRN-218	ENST00000497977	ACSBG1	Q96GR2	724 aa		13.95	□□□□□ -0.18
PTPRN-218	ENST00000497977	TNS2	Q63HR2	1409 aa		13.95	□□□□□ -0.18
PTPRN-218	ENST00000497977	NEFM	P07197	916 aa		13.94	□□□□□ -0.18
PTPRN-218	ENST00000497977	PRIM1	P49642	420 aa	Known RBP	13.94	□□□□□ -0.18
PTPRN-218	ENST00000497977	C1orf141	Q5JVX7	400 aa		13.94	□□□□□ -0.18
PTPRN-218	ENST00000497977	SULT6B1	Q6IMI4	303 aa		13.94	□□□□□ -0.18
PTPRN-218	ENST00000497977	THSD7A	Q9UPZ6	1657 aa		13.94	□□□□□ -0.18
PTPRN-218	ENST00000497977	COL18A1	P39060	1754 aa		13.94	□□□□□ -0.18
PTPRN-218	ENST00000497977	IL13	P35225	146 aa		13.93	□□□□□ -0.18
PTPRN-218	ENST00000497977	SLC27A3	Q5K4L6	730 aa		13.93	□□□□□ -0.18
PTPRN-218	ENST00000497977	SMARCC1	Q92922	1105 aa	Predicted RBP	13.93	□□□□□ -0.18
PTPRN-218	ENST00000497977	PNN	Q9H307	717 aa	Known RBP	13.93	□□□□□ -0.18
PTPRN-218	ENST00000497977	IGSF1	Q8N6C5	1336 aa		13.92	□□□□□ -0.18
PTPRN-218	ENST00000497977	KCNQ2	O43526	872 aa		13.92	□□□□□ -0.18
PTPRN-218	ENST00000497977	NKX1-1	Q15270	411 aa	Predicted RBP	13.92	□□□□□ -0.18
PTPRN-218	ENST00000497977	RALBP1	Q15311	655 aa		13.92	□□□□□ -0.18
PTPRN-218	ENST00000497977	TXNRD1	Q16881	649 aa		13.92	□□□□□ -0.18
PTPRN-218	ENST00000497977	STK32B	Q9NY57	414 aa		13.92	□□□□□ -0.18
PTPRN-218	ENST00000497977	LTN1	O94822	1766 aa		13.91	□□□□□ -0.18
PTPRN-218	ENST00000497977	U2SURP	O15042	1029 aa	Known RBP	13.91	□□□□□ -0.18
PTPRN-218	ENST00000497977	DDX10	Q13206	875 aa	Known RBP	13.91	□□□□□ -0.18
PTPRN-218	ENST00000497977	DCAF5	Q96JK2	942 aa		13.91	□□□□□ -0.18
PTPRN-218	ENST00000497977	ERVV-2	B6SEH9	535 aa		13.9	□□□□□ -0.18
PTPRN-218	ENST00000497977	MPRIP	Q6WCQ1	1025 aa		13.9	□□□□□ -0.18
PTPRN-218	ENST00000497977	EP400	Q96L91	3159 aa		13.89	□□□□□ -0.19
PTPRN-218	ENST00000497977	PHKG2	P15735	406 aa		13.89	□□□□□ -0.19
PTPRN-218	ENST00000497977	TMOD3	Q9NYL9	352 aa		13.89	□□□□□ -0.19
PTPRN-218	ENST00000497977	CYP27B1	O15528	508 aa		13.88	□□□□□ -0.19
PTPRN-218	ENST00000497977	PPP2R1A	P30153	589 aa		13.88	□□□□□ -0.19
PTPRN-218	ENST00000497977	R3HDM1	Q15032	1099 aa	Known RBP	13.88	□□□□□ -0.19
PTPRN-218	ENST00000497977	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.88	□□□□□ -0.19
PTPRN-218	ENST00000497977	CABP4	P57796	275 aa		13.87	□□□□□ -0.19
PTPRN-218	ENST00000497977	AKAP4	Q5JQC9	854 aa		13.87	□□□□□ -0.19
PTPRN-218	ENST00000497977	PARP4	Q9UKK3	1724 aa	Known RBP	13.87	□□□□□ -0.19
PTPRN-218	ENST00000497977	FCHSD2	O94868	740 aa		13.86	□□□□□ -0.19
PTPRN-218	ENST00000497977	GAS2L2	Q8NHY3	880 aa		13.86	□□□□□ -0.19
PTPRN-218	ENST00000497977	PSD	A5PKW4	1024 aa	Predicted RBP	13.85	□□□□□ -0.19
PTPRN-218	ENST00000497977	HMOX1	P09601	288 aa		13.85	□□□□□ -0.19
PTPRN-218	ENST00000497977	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.85	□□□□□ -0.19
PTPRN-218	ENST00000497977	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.85	□□□□□ -0.19
PTPRN-218	ENST00000497977	SLC15A2	Q16348	729 aa		13.85	□□□□□ -0.19
PTPRN-218	ENST00000497977	PROM2	Q8N271	834 aa		13.85	□□□□□ -0.19
PTPRN-218	ENST00000497977	PTF1A	Q7RTS3	328 aa		13.84	□□□□□ -0.19
PTPRN-218	ENST00000497977	FLAD1	Q8NFF5	587 aa		13.84	□□□□□ -0.19
PTPRN-218	ENST00000497977	CCNL1	Q9UK58	526 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPRN-218	ENST00000497977	MEGF6	O75095	1541 aa		13.84	□□□□□ -0.19
PTPRN-218	ENST00000497977	NCAPD2	Q15021	1401 aa		13.83	□□□□□ -0.2
PTPRN-218	ENST00000497977	SPON1	Q9HCB6	807 aa		13.83	□□□□□ -0.2
PTPRN-218	ENST00000497977	TFCP2L1	Q9NZI6	479 aa		13.83	□□□□□ -0.2
PTPRN-218	ENST00000497977	SRCAP	Q6ZRS2	3230 aa		13.83	□□□□□ -0.2
PTPRN-218	ENST00000497977	FAM208A	Q9UK61	1670 aa	Known RBP	13.82	□□□□□ -0.2
PTPRN-218	ENST00000497977	RGPD5	Q99666	1765 aa		13.82	□□□□□ -0.2
PTPRN-218	ENST00000497977	AEBP1	Q8IUX7	1158 aa		13.82	□□□□□ -0.2
PTPRN-218	ENST00000497977	SLC16A10	Q8TF71	515 aa		13.82	□□□□□ -0.2
PTPRN-218	ENST00000497977	PIGB	Q92521	554 aa		13.82	□□□□□ -0.2
PTPRN-218	ENST00000497977	RTF1	Q92541	710 aa	Known RBP	13.82	□□□□□ -0.2
PTPRN-218	ENST00000497977	MAP2	P11137	1827 aa	Known RBP	13.82	□□□□□ -0.2
PTPRN-218	ENST00000497977	KDR	P35968	1356 aa		13.82	□□□□□ -0.2
PTPRN-218	ENST00000497977	PEAK1	Q9H792	1746 aa		13.81	□□□□□ -0.2
PTPRN-218	ENST00000497977	BRWD3	Q6RI45	1802 aa		13.81	□□□□□ -0.2
PTPRN-218	ENST00000497977	LRRC37A3	O60309	1634 aa		13.8	□□□□□ -0.2
PTPRN-218	ENST00000497977	DCAF8L1	A6NGE4	600 aa		13.8	□□□□□ -0.2
PTPRN-218	ENST00000497977	GNAT3	A8MTJ3	354 aa		13.8	□□□□□ -0.2
PTPRN-218	ENST00000497977	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.8	□□□□□ -0.2
PTPRN-218	ENST00000497977	RGPD1	P0DJD0	1748 aa		13.79	□□□□□ -0.2
PTPRN-218	ENST00000497977	TEF	Q10587	303 aa		13.79	□□□□□ -0.2
PTPRN-218	ENST00000497977	MTHFSD	Q2M296	383 aa	Known RBP	13.79	□□□□□ -0.2
PTPRN-218	ENST00000497977	NFATC2IP	Q8NCF5	419 aa		13.79	□□□□□ -0.2
PTPRN-218	ENST00000497977	MSH5	O43196	834 aa		13.78	□□□□□ -0.2
PTPRN-218	ENST00000497977	HTATSF1	O43719	755 aa	Known RBP	13.78	□□□□□ -0.2
PTPRN-218	ENST00000497977	ATP6V1A	P38606	617 aa		13.78	□□□□□ -0.2
PTPRN-218	ENST00000497977	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.78	□□□□□ -0.2
PTPRN-218	ENST00000497977	LOC102724428	A0A0B4J2F2	783 aa		13.77	□□□□□ -0.21
PTPRN-218	ENST00000497977	PRKAR2B	P31323	418 aa		13.77	□□□□□ -0.21
PTPRN-218	ENST00000497977	SIK1	P57059	783 aa		13.77	□□□□□ -0.21
PTPRN-218	ENST00000497977	PALLD	Q8WX93	1383 aa		13.77	□□□□□ -0.21
PTPRN-218	ENST00000497977	AK7	Q96M32	723 aa		13.77	□□□□□ -0.21
PTPRN-218	ENST00000497977	RBM42	Q9BTD8	480 aa	Known RBP	13.77	□□□□□ -0.21
PTPRN-218	ENST00000497977	LRRC4B	Q9NT99	713 aa		13.77	□□□□□ -0.21
PTPRN-218	ENST00000497977	MAPK8IP3	Q9UPT6	1336 aa		13.76	□□□□□ -0.21
PTPRN-218	ENST00000497977	RNMT	O43148	476 aa	Known RBP	13.76	□□□□□ -0.21
PTPRN-218	ENST00000497977	POLD1	P28340	1107 aa		13.76	□□□□□ -0.21
PTPRN-218	ENST00000497977	WDR43	Q15061	677 aa	Known RBP eCLIP	13.76	□□□□□ -0.21
PTPRN-218	ENST00000497977	TTC5	Q8N0Z6	440 aa		13.76	□□□□□ -0.21
PTPRN-218	ENST00000497977	MTFR1L	Q9H019	292 aa		13.76	□□□□□ -0.21
PTPRN-218	ENST00000497977	SLC52A2	Q9HAB3	445 aa		13.76	□□□□□ -0.21
PTPRN-218	ENST00000497977	ATG3	Q9NT62	314 aa		13.76	□□□□□ -0.21
PTPRN-218	ENST00000497977	ASAP1	Q9ULH1	1129 aa		13.76	□□□□□ -0.21
PTPRN-218	ENST00000497977	ANP32C	O43423	234 aa		13.75	□□□□□ -0.21
PTPRN-218	ENST00000497977	AKT1S1	Q96B36	256 aa		13.75	□□□□□ -0.21
PTPRN-218	ENST00000497977	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.75	□□□□□ -0.21
PTPRN-218	ENST00000497977	RSPH6A	Q9H0K4	717 aa		13.75	□□□□□ -0.21
PTPRN-218	ENST00000497977	RGPD2	P0DJD1	1756 aa		13.74	□□□□□ -0.21
PTPRN-218	ENST00000497977	NPM2	Q86SE8	214 aa	Known RBP	13.74	□□□□□ -0.21
PTPRN-218	ENST00000497977	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPRN-218	ENST00000497977	LGR6	Q9HBX8	967 aa		13.73	□□□□□ -0.21
PTPRN-218	ENST00000497977	WNK3	Q9BYP7	1800 aa		13.73	□□□□□ -0.21
PTPRN-218	ENST00000497977	PTCD1	O75127	700 aa	Known RBP	13.72	□□□□□ -0.21

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