RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 CTCFLQ8NI51 663 aaPredicted RBP6.81□□□□□ -1.32
USF3-204ENST00000496826 GOLGA6AQ9NYA3 693 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 ZKSCAN5Q9Y2L8 839 aa6.81□□□□□ -1.32
USF3-204ENST00000496826 RFX1P22670 979 aa6.8□□□□□ -1.32
USF3-204ENST00000496826 LUC7L2Q9Y383 392 aaKnown RBP6.8□□□□□ -1.32
USF3-204ENST00000496826 KANK1Q14678 1352 aa6.8□□□□□ -1.32
USF3-204ENST00000496826 ZC3H15Q8WU90 426 aaKnown RBP6.8□□□□□ -1.32
USF3-204ENST00000496826 PALM3A6NDB9 673 aaPredicted RBP6.8□□□□□ -1.32
USF3-204ENST00000496826 MPHOSPH10O00566 681 aaKnown RBP6.8□□□□□ -1.32
USF3-204ENST00000496826 LUC7L3O95232 432 aaKnown RBP6.8□□□□□ -1.32
USF3-204ENST00000496826 PRR16Q569H4 304 aa6.8□□□□□ -1.32
USF3-204ENST00000496826 CTAGE6Q86UF2 777 aa6.8□□□□□ -1.32
USF3-204ENST00000496826 TTC36A6NLP5 189 aa6.8□□□□□ -1.32
USF3-204ENST00000496826 ACTN2P35609 894 aa6.8□□□□□ -1.32
USF3-204ENST00000496826 TRPC3Q13507 836 aa6.8□□□□□ -1.32
USF3-204ENST00000496826 VCX3BQ9H321 246 aa6.8□□□□□ -1.32
USF3-204ENST00000496826 RBM28Q9NW13 759 aaKnown RBP6.8□□□□□ -1.32
USF3-204ENST00000496826 ZNF777Q9ULD5 760 aaPredicted RBP6.8□□□□□ -1.32
USF3-204ENST00000496826 IKBKGQ9Y6K9 419 aa6.8□□□□□ -1.32
USF3-204ENST00000496826 GAS8O95995 478 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 MTIF2P46199 727 aaKnown RBP6.79□□□□□ -1.32
USF3-204ENST00000496826 LUZP2Q86TE4 346 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 RNF216Q9NWF9 866 aaPredicted RBP6.79□□□□□ -1.32
USF3-204ENST00000496826 BCAP29Q9UHQ4 241 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 POTEB2H3BUK9 544 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 FGFR1OPO95684 399 aaKnown RBP6.79□□□□□ -1.32
USF3-204ENST00000496826 NONOQ15233 471 aaKnown RBP eCLIP6.79□□□□□ -1.32
USF3-204ENST00000496826 SLC4A8Q2Y0W8 1093 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 TAF4BQ92750 862 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 IFT74Q96LB3 600 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 TTC14Q96N46 770 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 TUBB1Q9H4B7 451 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 DIABLOQ9NR28 239 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 E9PMD0 336 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 FNBP4Q8N3X1 1017 aaPredicted RBP6.79□□□□□ -1.32
USF3-204ENST00000496826 SMC1BQ8NDV3 1235 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 ALS2CR12Q96Q35 445 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 CPSF2Q9P2I0 782 aaKnown RBP6.79□□□□□ -1.32
USF3-204ENST00000496826 SETDB1Q15047 1291 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 KLHL10Q6JEL2 608 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 KIF2AO00139 706 aaPredicted RBP6.79□□□□□ -1.32
USF3-204ENST00000496826 CCDC25Q86WR0 208 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 NSRP1Q9H0G5 558 aaKnown RBP6.79□□□□□ -1.32
USF3-204ENST00000496826 HYPKQ9NX55 129 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 CGNL1Q0VF96 1302 aa6.79□□□□□ -1.32
USF3-204ENST00000496826 ZMYND8Q9ULU4 1186 aaPredicted RBP6.79□□□□□ -1.32
USF3-204ENST00000496826 KRT18P05783 430 aaKnown RBP6.78□□□□□ -1.32
USF3-204ENST00000496826 PSMA3P25788 255 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 SF3A3Q12874 501 aaKnown RBP eCLIP6.78□□□□□ -1.32
USF3-204ENST00000496826 CCDC122Q5T0U0 273 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 MCM10Q7L590 875 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 ZNF397Q8NF99 534 aaPredicted RBP6.78□□□□□ -1.32
USF3-204ENST00000496826 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.78□□□□□ -1.32
USF3-204ENST00000496826 SARNPP82979 210 aaKnown RBP6.78□□□□□ -1.32
USF3-204ENST00000496826 THOC7Q6I9Y2 204 aaKnown RBP6.78□□□□□ -1.32
USF3-204ENST00000496826 TRIM55Q9BYV6 548 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 ZMYND15Q9H091 742 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 ATP2A1O14983 1001 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 GBP7Q8N8V2 638 aaPredicted RBP6.78□□□□□ -1.32
USF3-204ENST00000496826 NEK11Q8NG66 645 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 IPO4Q8TEX9 1081 aaKnown RBP6.78□□□□□ -1.32
USF3-204ENST00000496826 CTAGE1Q96RT6 745 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 WDR78Q5VTH9 848 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 TAOK1Q7L7X3 1001 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 ZNF287Q9HBT7 754 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 ROCK1Q13464 1354 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 JRKLQ9Y4A0 524 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 PDXDC1Q6P996 788 aa6.78□□□□□ -1.32
USF3-204ENST00000496826 BCL11BQ9C0K0 894 aaPredicted RBP6.78□□□□□ -1.32
USF3-204ENST00000496826 CBFA2T2O43439 604 aa6.77□□□□□ -1.32
USF3-204ENST00000496826 BIRC2Q13490 618 aa6.77□□□□□ -1.32
USF3-204ENST00000496826 MUM1L1Q5H9M0 696 aa6.77□□□□□ -1.32
USF3-204ENST00000496826 CCDC155Q8N6L0 562 aa6.77□□□□□ -1.32
USF3-204ENST00000496826 IFIT2P09913 472 aaKnown RBP6.77□□□□□ -1.33
USF3-204ENST00000496826 CUL4BQ13620 913 aa6.77□□□□□ -1.33
USF3-204ENST00000496826 CHMP7Q8WUX9 453 aaPredicted RBP6.77□□□□□ -1.33
USF3-204ENST00000496826 PRKRIP1Q9H875 184 aaPredicted RBP6.77□□□□□ -1.33
USF3-204ENST00000496826 SYF2O95926 243 aaKnown RBP6.77□□□□□ -1.33
USF3-204ENST00000496826 CETN1Q12798 172 aa6.77□□□□□ -1.33
USF3-204ENST00000496826 APBB1IPQ7Z5R6 666 aaPredicted RBP6.77□□□□□ -1.33
USF3-204ENST00000496826 L3MBTL3Q96JM7 780 aaPredicted RBP6.77□□□□□ -1.33
USF3-204ENST00000496826 NAA15Q9BXJ9 866 aaKnown RBP6.77□□□□□ -1.33
USF3-204ENST00000496826 TTC21AQ8NDW8 1320 aa6.77□□□□□ -1.33
USF3-204ENST00000496826 CSB-PGBD3P0DP91 1061 aa6.77□□□□□ -1.33
USF3-204ENST00000496826 ATP2A2P16615 1042 aaKnown RBP6.77□□□□□ -1.33
USF3-204ENST00000496826 ANKRD35Q8N283 1001 aa6.77□□□□□ -1.33
USF3-204ENST00000496826 SMARCC2Q8TAQ2 1214 aa6.77□□□□□ -1.33
USF3-204ENST00000496826 MTUS1Q9ULD2 1270 aa6.77□□□□□ -1.33
USF3-204ENST00000496826 EHMT1Q9H9B1 1298 aa6.77□□□□□ -1.33
USF3-204ENST00000496826 INPP1P49441 399 aa6.77□□□□□ -1.33
USF3-204ENST00000496826 XPCQ01831 940 aaPredicted RBP6.77□□□□□ -1.33
USF3-204ENST00000496826 CCDC40Q4G0X9 1142 aa6.77□□□□□ -1.33
USF3-204ENST00000496826 LRRC27Q9C0I9 530 aa6.77□□□□□ -1.33
USF3-204ENST00000496826 PPFIA3O75145 1194 aa6.77□□□□□ -1.33
USF3-204ENST00000496826 S100BP04271 92 aaPredicted RBP6.76□□□□□ -1.33
USF3-204ENST00000496826 AMOTQ4VCS5 1084 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 CHMP6Q96FZ7 201 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 CCDC68Q9H2F9 335 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 CTAGE5O15320 804 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 REC8O95072 547 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms