RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 CLTCQ00610 1675 aaKnown RBP8.13□□□□□ -1.11
SSBP1-213ENST00000496622 ZNF772Q68DY9 489 aaPredicted RBP8.13□□□□□ -1.11
SSBP1-213ENST00000496622 KCNK17Q96T54 332 aa8.13□□□□□ -1.11
SSBP1-213ENST00000496622 A2ML1A8K2U0 1454 aa8.12□□□□□ -1.11
SSBP1-213ENST00000496622 METP08581 1390 aa8.12□□□□□ -1.11
SSBP1-213ENST00000496622 CDCA7LQ96GN5 454 aa8.12□□□□□ -1.11
SSBP1-213ENST00000496622 ARIH1Q9Y4X5 557 aaPredicted RBP8.12□□□□□ -1.11
SSBP1-213ENST00000496622 DMRTA1Q5VZB9 504 aa8.11□□□□□ -1.11
SSBP1-213ENST00000496622 CCDC146Q8IYE0 955 aa8.11□□□□□ -1.11
SSBP1-213ENST00000496622 CDHR5Q9HBB8 845 aa8.11□□□□□ -1.11
SSBP1-213ENST00000496622 POLR1AO95602 1720 aaPredicted RBP8.11□□□□□ -1.11
SSBP1-213ENST00000496622 TMEM131LA2VDJ0 1609 aa8.11□□□□□ -1.11
SSBP1-213ENST00000496622 RIMS2Q9UQ26 1411 aa8.11□□□□□ -1.11
SSBP1-213ENST00000496622 IQGAP1P46940 1657 aa8.11□□□□□ -1.11
SSBP1-213ENST00000496622 TNRQ92752 1358 aa8.11□□□□□ -1.11
SSBP1-213ENST00000496622 ZNF687Q8N1G0 1237 aa8.11□□□□□ -1.11
SSBP1-213ENST00000496622 CABP1Q9NZU7 370 aa8.11□□□□□ -1.11
SSBP1-213ENST00000496622 ZBED9Q6R2W3 1325 aa8.1□□□□□ -1.11
SSBP1-213ENST00000496622 MYO5BQ9ULV0 1848 aa8.1□□□□□ -1.11
SSBP1-213ENST00000496622 BRD4O60885 1362 aaPredicted RBP8.1□□□□□ -1.11
SSBP1-213ENST00000496622 OSBPP22059 807 aa8.1□□□□□ -1.11
SSBP1-213ENST00000496622 CCDC125Q86Z20 511 aa8.1□□□□□ -1.11
SSBP1-213ENST00000496622 CDK19Q9BWU1 502 aa8.1□□□□□ -1.11
SSBP1-213ENST00000496622 GGNBP2Q9H3C7 697 aa8.1□□□□□ -1.11
SSBP1-213ENST00000496622 EVC2Q86UK5 1308 aa8.1□□□□□ -1.11
SSBP1-213ENST00000496622 ASXL1Q8IXJ9 1541 aa8.1□□□□□ -1.11
SSBP1-213ENST00000496622 MAP3K7O43318 606 aa8.1□□□□□ -1.11
SSBP1-213ENST00000496622 RBM26Q5T8P6 1007 aaKnown RBP8.1□□□□□ -1.11
SSBP1-213ENST00000496622 YTHDC2Q9H6S0 1430 aaKnown RBP8.1□□□□□ -1.11
SSBP1-213ENST00000496622 LAMC1P11047 1609 aa8.09□□□□□ -1.11
SSBP1-213ENST00000496622 PPLO60437 1756 aa8.09□□□□□ -1.11
SSBP1-213ENST00000496622 COL9A1P20849 921 aa8.09□□□□□ -1.11
SSBP1-213ENST00000496622 ANKRD13DQ6ZTN6 518 aa8.09□□□□□ -1.11
SSBP1-213ENST00000496622 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.09□□□□□ -1.11
SSBP1-213ENST00000496622 ZDHHC16Q969W1 377 aa8.09□□□□□ -1.11
SSBP1-213ENST00000496622 BRPF3Q9ULD4 1205 aa8.09□□□□□ -1.11
SSBP1-213ENST00000496622 IFT172Q9UG01 1749 aa8.09□□□□□ -1.11
SSBP1-213ENST00000496622 NSD3Q9BZ95 1437 aa8.09□□□□□ -1.11
SSBP1-213ENST00000496622 PPP4R3BQ5MIZ7 849 aa8.09□□□□□ -1.11
SSBP1-213ENST00000496622 SECISBP2LQ93073 1101 aaKnown RBP8.09□□□□□ -1.11
SSBP1-213ENST00000496622 NEURL4Q96JN8 1562 aa8.08□□□□□ -1.12
SSBP1-213ENST00000496622 MORC1Q86VD1 984 aa8.08□□□□□ -1.12
SSBP1-213ENST00000496622 IPO4Q8TEX9 1081 aaKnown RBP8.08□□□□□ -1.12
SSBP1-213ENST00000496622 PROX2Q3B8N5 592 aa8.08□□□□□ -1.12
SSBP1-213ENST00000496622 LRPPRCP42704 1394 aaKnown RBP8.08□□□□□ -1.12
SSBP1-213ENST00000496622 MYO3AQ8NEV4 1616 aa8.08□□□□□ -1.12
SSBP1-213ENST00000496622 NEUROD2Q15784 382 aa8.07□□□□□ -1.12
SSBP1-213ENST00000496622 CNPY4Q8N129 248 aa8.07□□□□□ -1.12
SSBP1-213ENST00000496622 PRDM10Q9NQV6 1147 aa8.07□□□□□ -1.12
SSBP1-213ENST00000496622 RBM19Q9Y4C8 960 aaKnown RBP8.07□□□□□ -1.12
SSBP1-213ENST00000496622 ATAD2Q6PL18 1390 aa8.07□□□□□ -1.12
SSBP1-213ENST00000496622 TMEM2Q9UHN6 1383 aa8.07□□□□□ -1.12
SSBP1-213ENST00000496622 MTHFSP49914 203 aa8.07□□□□□ -1.12
SSBP1-213ENST00000496622 ZC3H13Q5T200 1668 aaKnown RBP8.07□□□□□ -1.12
SSBP1-213ENST00000496622 ZFYVE9O95405 1425 aa8.07□□□□□ -1.12
SSBP1-213ENST00000496622 SPDYE16A6NNV3 312 aaPredicted RBP8.06□□□□□ -1.12
SSBP1-213ENST00000496622 PHF14O94880 888 aa8.06□□□□□ -1.12
SSBP1-213ENST00000496622 A0A1W2PP64 1363 aa8.06□□□□□ -1.12
SSBP1-213ENST00000496622 SBNO2Q9Y2G9 1366 aa8.06□□□□□ -1.12
SSBP1-213ENST00000496622 TULP4Q9NRJ4 1543 aa8.06□□□□□ -1.12
SSBP1-213ENST00000496622 PPM1GO15355 546 aaPredicted RBP8.06□□□□□ -1.12
SSBP1-213ENST00000496622 PTGER2P43116 358 aa8.06□□□□□ -1.12
SSBP1-213ENST00000496622 WDR43Q15061 677 aaKnown RBP eCLIP8.06□□□□□ -1.12
SSBP1-213ENST00000496622 C6orf132Q5T0Z8 1188 aa8.05□□□□□ -1.12
SSBP1-213ENST00000496622 BCL2L12Q9HB09 334 aa8.05□□□□□ -1.12
SSBP1-213ENST00000496622 RRP7AQ9Y3A4 280 aaKnown RBP8.05□□□□□ -1.12
SSBP1-213ENST00000496622 TESPA1A2RU30 521 aaPredicted RBP8.05□□□□□ -1.12
SSBP1-213ENST00000496622 APAF1O14727 1248 aa8.05□□□□□ -1.12
SSBP1-213ENST00000496622 FYB1O15117 783 aa8.05□□□□□ -1.12
SSBP1-213ENST00000496622 RXRBP28702 533 aa8.05□□□□□ -1.12
SSBP1-213ENST00000496622 EN1Q05925 392 aaPredicted RBP8.05□□□□□ -1.12
SSBP1-213ENST00000496622 ZNF784Q8NCA9 323 aaPredicted RBP8.05□□□□□ -1.12
SSBP1-213ENST00000496622 CCDC9Q9Y3X0 531 aaKnown RBP8.05□□□□□ -1.12
SSBP1-213ENST00000496622 ROBO2Q9HCK4 1378 aa8.04□□□□□ -1.12
SSBP1-213ENST00000496622 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.04□□□□□ -1.12
SSBP1-213ENST00000496622 KIAA1210Q9ULL0 1709 aa8.04□□□□□ -1.12
SSBP1-213ENST00000496622 CEP170BQ9Y4F5 1589 aaPredicted RBP8.04□□□□□ -1.12
SSBP1-213ENST00000496622 CGNL1Q0VF96 1302 aa8.04□□□□□ -1.12
SSBP1-213ENST00000496622 GTF2E1P29083 439 aaPredicted RBP8.04□□□□□ -1.12
SSBP1-213ENST00000496622 LSM11P83369 360 aaKnown RBP eCLIP8.04□□□□□ -1.12
SSBP1-213ENST00000496622 TYW1BQ6NUM6 668 aa8.04□□□□□ -1.12
SSBP1-213ENST00000496622 TEX2Q8IWB9 1127 aa8.04□□□□□ -1.12
SSBP1-213ENST00000496622 MYOM1P52179 1685 aa8.04□□□□□ -1.12
SSBP1-213ENST00000496622 ARHGAP33O14559 1287 aa8.03□□□□□ -1.12
SSBP1-213ENST00000496622 AMOTL2Q9Y2J4 779 aa8.03□□□□□ -1.12
SSBP1-213ENST00000496622 EID1Q9Y6B2 187 aa8.03□□□□□ -1.12
SSBP1-213ENST00000496622 WASLO00401 505 aaPredicted RBP8.03□□□□□ -1.12
SSBP1-213ENST00000496622 PLIN1O60240 522 aa8.03□□□□□ -1.12
SSBP1-213ENST00000496622 HDGFP51858 240 aaKnown RBP8.03□□□□□ -1.12
SSBP1-213ENST00000496622 NUDCQ9Y266 331 aa8.03□□□□□ -1.12
SSBP1-213ENST00000496622 QRICH2Q9H0J4 1663 aa8.03□□□□□ -1.12
SSBP1-213ENST00000496622 C3orf80F5H4A9 247 aa8.02□□□□□ -1.12
SSBP1-213ENST00000496622 FAM161AQ3B820 660 aa8.02□□□□□ -1.12
SSBP1-213ENST00000496622 B4GALNT3Q6L9W6 998 aa8.02□□□□□ -1.12
SSBP1-213ENST00000496622 PMFBP1Q8TBY8 1022 aa8.02□□□□□ -1.12
SSBP1-213ENST00000496622 KDM5AP29375 1690 aaKnown RBP8.02□□□□□ -1.13
SSBP1-213ENST00000496622 PTPREP23469 700 aa8.02□□□□□ -1.13
SSBP1-213ENST00000496622 NME9Q86XW9 330 aa8.02□□□□□ -1.13
SSBP1-213ENST00000496622 THEMISQ8N1K5 641 aaPredicted RBP8.02□□□□□ -1.13
SSBP1-213ENST00000496622 NUDT16Q96DE0 195 aaKnown RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms