RNA–Protein interactions for RNA: ENST00000494764.1

RAPGEF3-213, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 5

Gene RAPGEF3, Length 783 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-213ENST00000494764 SLC16A10Q8TF71 515 aa16.27■□□□□ 0.2
RAPGEF3-213ENST00000494764 AKT1S1Q96B36 256 aa16.27■□□□□ 0.2
RAPGEF3-213ENST00000494764 NBPF4Q96M43 638 aa16.27■□□□□ 0.2
RAPGEF3-213ENST00000494764 TFCP2L1Q9NZI6 479 aa16.27■□□□□ 0.2
RAPGEF3-213ENST00000494764 RAPGEF4Q8WZA2 1011 aa16.26■□□□□ 0.19
RAPGEF3-213ENST00000494764 USP47Q96K76 1375 aa16.26■□□□□ 0.19
RAPGEF3-213ENST00000494764 TATP17735 454 aaPredicted RBP16.25■□□□□ 0.19
RAPGEF3-213ENST00000494764 KCNQ4P56696 695 aa16.25■□□□□ 0.19
RAPGEF3-213ENST00000494764 USHBP1Q8N6Y0 703 aa16.25■□□□□ 0.19
RAPGEF3-213ENST00000494764 CGNL1Q0VF96 1302 aa16.24■□□□□ 0.19
RAPGEF3-213ENST00000494764 POLD1P28340 1107 aa16.24■□□□□ 0.19
RAPGEF3-213ENST00000494764 RTL1A6NKG5 1358 aa16.24■□□□□ 0.19
RAPGEF3-213ENST00000494764 PAPPAQ13219 1627 aa16.23■□□□□ 0.19
RAPGEF3-213ENST00000494764 SMG6Q86US8 1419 aaKnown RBP16.23■□□□□ 0.19
RAPGEF3-213ENST00000494764 HSP90AB2PQ58FF8 381 aa16.23■□□□□ 0.19
RAPGEF3-213ENST00000494764 KLHL34Q8N239 644 aa16.22■□□□□ 0.19
RAPGEF3-213ENST00000494764 CCNL1Q9UK58 526 aaPredicted RBP16.22■□□□□ 0.19
RAPGEF3-213ENST00000494764 PNPLA7Q6ZV29 1317 aa16.21■□□□□ 0.19
RAPGEF3-213ENST00000494764 MSH5O43196 834 aa16.21■□□□□ 0.19
RAPGEF3-213ENST00000494764 GPR162Q16538 588 aa16.21■□□□□ 0.19
RAPGEF3-213ENST00000494764 MEGF6O75095 1541 aa16.2■□□□□ 0.18
RAPGEF3-213ENST00000494764 DOT1LQ8TEK3 1739 aa16.2■□□□□ 0.18
RAPGEF3-213ENST00000494764 CHD4Q14839 1912 aa16.2■□□□□ 0.18
RAPGEF3-213ENST00000494764 INSRP06213 1382 aa16.2■□□□□ 0.18
RAPGEF3-213ENST00000494764 HMGB2P26583 209 aaKnown RBP16.19■□□□□ 0.18
RAPGEF3-213ENST00000494764 CARD14Q9BXL6 1004 aa16.19■□□□□ 0.18
RAPGEF3-213ENST00000494764 QSER1Q2KHR3 1735 aa16.19■□□□□ 0.18
RAPGEF3-213ENST00000494764 NSD2O96028 1365 aa16.18■□□□□ 0.18
RAPGEF3-213ENST00000494764 FLT4P35916 1363 aa16.18■□□□□ 0.18
RAPGEF3-213ENST00000494764 MAP3K5Q99683 1374 aa16.18■□□□□ 0.18
RAPGEF3-213ENST00000494764 KIF20BQ96Q89 1820 aa16.18■□□□□ 0.18
RAPGEF3-213ENST00000494764 PPM1GO15355 546 aaPredicted RBP16.18■□□□□ 0.18
RAPGEF3-213ENST00000494764 ZNF784Q8NCA9 323 aaPredicted RBP16.18■□□□□ 0.18
RAPGEF3-213ENST00000494764 TIMELESSQ9UNS1 1208 aa16.18■□□□□ 0.18
RAPGEF3-213ENST00000494764 LY75O60449 1722 aa16.18■□□□□ 0.18
RAPGEF3-213ENST00000494764 SHANK3Q9BYB0 1731 aa16.18■□□□□ 0.18
RAPGEF3-213ENST00000494764 PCDH11XQ9BZA7 1347 aa16.18■□□□□ 0.18
RAPGEF3-213ENST00000494764 PCDH11YQ9BZA8 1340 aa16.18■□□□□ 0.18
RAPGEF3-213ENST00000494764 KIF24Q5T7B8 1368 aa16.17■□□□□ 0.18
RAPGEF3-213ENST00000494764 MPRIPQ6WCQ1 1025 aa16.17■□□□□ 0.18
RAPGEF3-213ENST00000494764 PELP1Q8IZL8 1130 aaKnown RBP16.17■□□□□ 0.18
RAPGEF3-213ENST00000494764 EMILIN1Q9Y6C2 1016 aa16.16■□□□□ 0.18
RAPGEF3-213ENST00000494764 COL23A1Q86Y22 540 aaPredicted RBP16.15■□□□□ 0.18
RAPGEF3-213ENST00000494764 TUBGCP6Q96RT7 1819 aa16.15■□□□□ 0.18
RAPGEF3-213ENST00000494764 NSD3Q9BZ95 1437 aa16.14■□□□□ 0.17
RAPGEF3-213ENST00000494764 CYP27B1O15528 508 aa16.14■□□□□ 0.17
RAPGEF3-213ENST00000494764 POLR3GLQ9BT43 218 aa16.14■□□□□ 0.17
RAPGEF3-213ENST00000494764 MAP2P11137 1827 aaKnown RBP16.13■□□□□ 0.17
RAPGEF3-213ENST00000494764 FLAD1Q8NFF5 587 aa16.13■□□□□ 0.17
RAPGEF3-213ENST00000494764 SMARCC1Q92922 1105 aaPredicted RBP16.13■□□□□ 0.17
RAPGEF3-213ENST00000494764 PCGF6Q9BYE7 350 aa16.13■□□□□ 0.17
RAPGEF3-213ENST00000494764 SPG7Q9UQ90 795 aa16.13■□□□□ 0.17
RAPGEF3-213ENST00000494764 GOLGB1Q14789 3259 aaKnown RBP16.12■□□□□ 0.17
RAPGEF3-213ENST00000494764 COL24A1Q17RW2 1714 aa16.12■□□□□ 0.17
RAPGEF3-213ENST00000494764 WASHC2AQ641Q2 1341 aa16.12■□□□□ 0.17
RAPGEF3-213ENST00000494764 NLGN2Q8NFZ4 835 aa16.11■□□□□ 0.17
RAPGEF3-213ENST00000494764 PALLDQ8WX93 1383 aa16.11■□□□□ 0.17
RAPGEF3-213ENST00000494764 MSL1Q68DK7 614 aa16.1■□□□□ 0.17
RAPGEF3-213ENST00000494764 PIGBQ92521 554 aa16.1■□□□□ 0.17
RAPGEF3-213ENST00000494764 EYA1Q99502 592 aa16.1■□□□□ 0.17
RAPGEF3-213ENST00000494764 ITGB4P16144 1822 aa16.1■□□□□ 0.17
RAPGEF3-213ENST00000494764 NKX1-1Q15270 411 aaPredicted RBP16.09■□□□□ 0.17
RAPGEF3-213ENST00000494764 AK7Q96M32 723 aa16.09■□□□□ 0.17
RAPGEF3-213ENST00000494764 GRIN3BO60391 1043 aa16.08■□□□□ 0.16
RAPGEF3-213ENST00000494764 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.08■□□□□ 0.16
RAPGEF3-213ENST00000494764 POLKQ9UBT6 870 aa16.08■□□□□ 0.16
RAPGEF3-213ENST00000494764 C5P01031 1676 aa16.08■□□□□ 0.16
RAPGEF3-213ENST00000494764 TNNT2P45379 298 aaPredicted RBP16.07■□□□□ 0.16
RAPGEF3-213ENST00000494764 IFNL2Q8IZJ0 200 aa16.07■□□□□ 0.16
RAPGEF3-213ENST00000494764 CLSPNQ9HAW4 1339 aa16.07■□□□□ 0.16
RAPGEF3-213ENST00000494764 TAF1LQ8IZX4 1826 aa16.07■□□□□ 0.16
RAPGEF3-213ENST00000494764 TMOD3Q9NYL9 352 aa16.06■□□□□ 0.16
RAPGEF3-213ENST00000494764 CD2APQ9Y5K6 639 aa16.05■□□□□ 0.16
RAPGEF3-213ENST00000494764 LOC102724428A0A0B4J2F2 783 aa16.04■□□□□ 0.16
RAPGEF3-213ENST00000494764 PHF14O94880 888 aa16.04■□□□□ 0.16
RAPGEF3-213ENST00000494764 PHKG2P15735 406 aa16.04■□□□□ 0.16
RAPGEF3-213ENST00000494764 SIK1P57059 783 aa16.04■□□□□ 0.16
RAPGEF3-213ENST00000494764 C1QTNF8P60827 252 aa16.04■□□□□ 0.16
RAPGEF3-213ENST00000494764 EIF4G2P78344 907 aaKnown RBP eCLIP16.04■□□□□ 0.16
RAPGEF3-213ENST00000494764 PKD1L3Q7Z443 1732 aa16.04■□□□□ 0.16
RAPGEF3-213ENST00000494764 YBX3P16989 372 aaKnown RBP eCLIP16.03■□□□□ 0.16
RAPGEF3-213ENST00000494764 ATP6V1AP38606 617 aa16.03■□□□□ 0.16
RAPGEF3-213ENST00000494764 EIF4A2Q14240 407 aaKnown RBP16.03■□□□□ 0.16
RAPGEF3-213ENST00000494764 ASAP1Q9ULH1 1129 aa16.03■□□□□ 0.16
RAPGEF3-213ENST00000494764 NCAPD2Q15021 1401 aa16.02■□□□□ 0.16
RAPGEF3-213ENST00000494764 TOGARAM1Q9Y4F4 1720 aa16.02■□□□□ 0.16
RAPGEF3-213ENST00000494764 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.02■□□□□ 0.16
RAPGEF3-213ENST00000494764 SMIM5Q71RC9 77 aa16.02■□□□□ 0.16
RAPGEF3-213ENST00000494764 PANK3Q9H999 370 aa16.02■□□□□ 0.16
RAPGEF3-213ENST00000494764 C4BP0C0L5 1744 aa16.02■□□□□ 0.15
RAPGEF3-213ENST00000494764 GIGYF1O75420 1035 aaPredicted RBP16.01■□□□□ 0.15
RAPGEF3-213ENST00000494764 SSFA2P28290 1259 aa16.01■□□□□ 0.15
RAPGEF3-213ENST00000494764 ANKRD26Q9UPS8 1709 aa16■□□□□ 0.15
RAPGEF3-213ENST00000494764 SENP3-EIF4A1A0A087X0R7 540 aa16■□□□□ 0.15
RAPGEF3-213ENST00000494764 HSPA5P11021 654 aaKnown RBP16■□□□□ 0.15
RAPGEF3-213ENST00000494764 LINC00116Q8NCU8 138 aa16■□□□□ 0.15
RAPGEF3-213ENST00000494764 PLEKHO1Q53GL0 409 aaPredicted RBP15.99■□□□□ 0.15
RAPGEF3-213ENST00000494764 AMIGO3Q86WK7 504 aa15.99■□□□□ 0.15
RAPGEF3-213ENST00000494764 ATG3Q9NT62 314 aa15.99■□□□□ 0.15
RAPGEF3-213ENST00000494764 UBR3Q6ZT12 1888 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms