RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 INTS3Q68E01 1043 aaKnown RBP18.9■□□□□ 0.62
SDF4-207ENST00000494748 RIMBP3CA6NJZ7 1639 aa18.9■□□□□ 0.62
SDF4-207ENST00000494748 RIMBP3BA6NNM3 1639 aa18.9■□□□□ 0.62
SDF4-207ENST00000494748 RIMBP3Q9UFD9 1639 aa18.9■□□□□ 0.62
SDF4-207ENST00000494748 XPCQ01831 940 aaPredicted RBP18.9■□□□□ 0.62
SDF4-207ENST00000494748 ANKRD44Q8N8A2 993 aa18.9■□□□□ 0.62
SDF4-207ENST00000494748 CFAP44Q96MT7 982 aa18.9■□□□□ 0.62
SDF4-207ENST00000494748 API5Q9BZZ5 524 aaKnown RBP18.9■□□□□ 0.62
SDF4-207ENST00000494748 RBM10P98175 930 aaKnown RBP18.9■□□□□ 0.62
SDF4-207ENST00000494748 CDK19Q9BWU1 502 aa18.9■□□□□ 0.62
SDF4-207ENST00000494748 ZKSCAN5Q9Y2L8 839 aa18.9■□□□□ 0.62
SDF4-207ENST00000494748 R3HCC1Q9Y3T6 440 aaKnown RBP18.89■□□□□ 0.61
SDF4-207ENST00000494748 CPSF1Q10570 1443 aaKnown RBP18.89■□□□□ 0.61
SDF4-207ENST00000494748 NCLP19338 710 aaKnown RBP18.89■□□□□ 0.61
SDF4-207ENST00000494748 LRSAM1Q6UWE0 723 aa18.89■□□□□ 0.61
SDF4-207ENST00000494748 HDGFL2Q7Z4V5 671 aaPredicted RBP18.89■□□□□ 0.61
SDF4-207ENST00000494748 SENP3Q9H4L4 574 aaPredicted RBP18.88■□□□□ 0.61
SDF4-207ENST00000494748 CEP85Q6P2H3 762 aa18.87■□□□□ 0.61
SDF4-207ENST00000494748 NRKQ7Z2Y5 1582 aa18.87■□□□□ 0.61
SDF4-207ENST00000494748 MON2Q7Z3U7 1717 aa18.87■□□□□ 0.61
SDF4-207ENST00000494748 EMILIN1Q9Y6C2 1016 aa18.87■□□□□ 0.61
SDF4-207ENST00000494748 FAM83GA6ND36 823 aa18.86■□□□□ 0.61
SDF4-207ENST00000494748 RTL1A6NKG5 1358 aa18.86■□□□□ 0.61
SDF4-207ENST00000494748 SMARCA5O60264 1052 aaPredicted RBP18.86■□□□□ 0.61
SDF4-207ENST00000494748 TCHHQ07283 1943 aa18.85■□□□□ 0.61
SDF4-207ENST00000494748 MSH6P52701 1360 aa18.85■□□□□ 0.61
SDF4-207ENST00000494748 SYCE3A1L190 88 aa18.85■□□□□ 0.61
SDF4-207ENST00000494748 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.85■□□□□ 0.61
SDF4-207ENST00000494748 DLC1Q96QB1 1528 aa18.84■□□□□ 0.61
SDF4-207ENST00000494748 PRDM4Q9UKN5 801 aa18.84■□□□□ 0.61
SDF4-207ENST00000494748 MCM5P33992 734 aa18.84■□□□□ 0.61
SDF4-207ENST00000494748 RICTORQ6R327 1708 aa18.83■□□□□ 0.61
SDF4-207ENST00000494748 UQCRHLA0A096LP55 91 aa18.83■□□□□ 0.61
SDF4-207ENST00000494748 ST18O60284 1047 aa18.83■□□□□ 0.61
SDF4-207ENST00000494748 UQCRHP07919 91 aa18.83■□□□□ 0.61
SDF4-207ENST00000494748 C3P01024 1663 aa18.83■□□□□ 0.6
SDF4-207ENST00000494748 AKAP12Q02952 1782 aa18.83■□□□□ 0.6
SDF4-207ENST00000494748 DCTN1Q14203 1278 aa18.82■□□□□ 0.6
SDF4-207ENST00000494748 RPAP2Q8IXW5 612 aaPredicted RBP18.82■□□□□ 0.6
SDF4-207ENST00000494748 KRT24Q2M2I5 525 aa18.82■□□□□ 0.6
SDF4-207ENST00000494748 AATKQ6ZMQ8 1374 aa18.82■□□□□ 0.6
SDF4-207ENST00000494748 CPS1P31327 1500 aa18.81■□□□□ 0.6
SDF4-207ENST00000494748 BRD1O95696 1058 aa18.8■□□□□ 0.6
SDF4-207ENST00000494748 SLC52A1Q9NWF4 448 aa18.8■□□□□ 0.6
SDF4-207ENST00000494748 FAM13BQ9NYF5 915 aa18.8■□□□□ 0.6
SDF4-207ENST00000494748 OSBPL3Q9H4L5 887 aa18.8■□□□□ 0.6
SDF4-207ENST00000494748 ZRANB1Q9UGI0 708 aa18.8■□□□□ 0.6
SDF4-207ENST00000494748 EDC4Q6P2E9 1401 aaKnown RBP18.8■□□□□ 0.6
SDF4-207ENST00000494748 TMX3Q96JJ7 454 aa18.79■□□□□ 0.6
SDF4-207ENST00000494748 MAP7D2Q96T17 732 aa18.79■□□□□ 0.6
SDF4-207ENST00000494748 ERC2O15083 957 aa18.79■□□□□ 0.6
SDF4-207ENST00000494748 CUL4AQ13619 759 aa18.79■□□□□ 0.6
SDF4-207ENST00000494748 MEIS3Q99687 375 aa18.79■□□□□ 0.6
SDF4-207ENST00000494748 CCDC39Q9UFE4 941 aa18.79■□□□□ 0.6
SDF4-207ENST00000494748 RGPD1P0DJD0 1748 aa18.79■□□□□ 0.6
SDF4-207ENST00000494748 SALL3Q9BXA9 1300 aa18.79■□□□□ 0.6
SDF4-207ENST00000494748 REC8O95072 547 aa18.78■□□□□ 0.6
SDF4-207ENST00000494748 DYNC1I1O14576 645 aa18.78■□□□□ 0.6
SDF4-207ENST00000494748 LMOD3Q0VAK6 560 aa18.78■□□□□ 0.6
SDF4-207ENST00000494748 CSPP1Q1MSJ5 1256 aa18.78■□□□□ 0.6
SDF4-207ENST00000494748 KIAA0232Q92628 1395 aa18.77■□□□□ 0.6
SDF4-207ENST00000494748 NME9Q86XW9 330 aa18.77■□□□□ 0.6
SDF4-207ENST00000494748 SASS6Q6UVJ0 657 aa18.76■□□□□ 0.59
SDF4-207ENST00000494748 MBD3O95983 291 aa18.76■□□□□ 0.59
SDF4-207ENST00000494748 CASC1Q6TDU7 716 aa18.76■□□□□ 0.59
SDF4-207ENST00000494748 IL17RAQ96F46 866 aa18.76■□□□□ 0.59
SDF4-207ENST00000494748 N4BP2Q86UW6 1770 aaPredicted RBP18.76■□□□□ 0.59
SDF4-207ENST00000494748 FOXD4L5Q5VV16 416 aaPredicted RBP18.75■□□□□ 0.59
SDF4-207ENST00000494748 FOXD4L4Q8WXT5 416 aaPredicted RBP18.75■□□□□ 0.59
SDF4-207ENST00000494748 PALD1Q9ULE6 856 aa18.75■□□□□ 0.59
SDF4-207ENST00000494748 ITSN1Q15811 1721 aa18.75■□□□□ 0.59
SDF4-207ENST00000494748 RNF214Q8ND24 703 aa18.75■□□□□ 0.59
SDF4-207ENST00000494748 APBB1O00213 710 aa18.75■□□□□ 0.59
SDF4-207ENST00000494748 PDE1AP54750 535 aa18.75■□□□□ 0.59
SDF4-207ENST00000494748 NRXN3Q9Y4C0 1643 aa18.74■□□□□ 0.59
SDF4-207ENST00000494748 XRN1Q8IZH2 1706 aaKnown RBP18.74■□□□□ 0.59
SDF4-207ENST00000494748 CHL1O00533 1208 aa18.74■□□□□ 0.59
SDF4-207ENST00000494748 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.74■□□□□ 0.592e-6■■□□□ 12.4
SDF4-207ENST00000494748 NEK4P51957 841 aa18.74■□□□□ 0.59
SDF4-207ENST00000494748 WAPLQ7Z5K2 1190 aa18.74■□□□□ 0.59
SDF4-207ENST00000494748 PEAK1Q9H792 1746 aa18.74■□□□□ 0.59
SDF4-207ENST00000494748 RAPGEF3O95398 923 aa18.73■□□□□ 0.59
SDF4-207ENST00000494748 PTPRCP08575 1304 aa18.73■□□□□ 0.59
SDF4-207ENST00000494748 NEO1Q92859 1461 aa18.72■□□□□ 0.59
SDF4-207ENST00000494748 RRS1Q15050 365 aaKnown RBP18.72■□□□□ 0.59
SDF4-207ENST00000494748 ESYT1Q9BSJ8 1104 aa18.72■□□□□ 0.59
SDF4-207ENST00000494748 GADD45BO75293 160 aaPredicted RBP18.71■□□□□ 0.59
SDF4-207ENST00000494748 TSPY26PQ9H489 355 aa18.71■□□□□ 0.59
SDF4-207ENST00000494748 CRB1P82279 1406 aa18.71■□□□□ 0.59
SDF4-207ENST00000494748 INTS4Q96HW7 963 aaKnown RBP18.71■□□□□ 0.59
SDF4-207ENST00000494748 AEBP1Q8IUX7 1158 aa18.71■□□□□ 0.59
SDF4-207ENST00000494748 FAM208AQ9UK61 1670 aaKnown RBP18.7■□□□□ 0.58
SDF4-207ENST00000494748 NALCNQ8IZF0 1738 aa18.7■□□□□ 0.58
SDF4-207ENST00000494748 RIMS1Q86UR5 1692 aaKnown RBP18.7■□□□□ 0.58
SDF4-207ENST00000494748 TSHZ3Q63HK5 1081 aa18.7■□□□□ 0.58
SDF4-207ENST00000494748 MCM2P49736 904 aa18.69■□□□□ 0.58
SDF4-207ENST00000494748 JARID2Q92833 1246 aaPredicted RBP18.69■□□□□ 0.58
SDF4-207ENST00000494748 MTERF4Q7Z6M4 381 aaKnown RBP18.68■□□□□ 0.58
SDF4-207ENST00000494748 RPAP1Q9BWH6 1393 aaPredicted RBP18.68■□□□□ 0.58
SDF4-207ENST00000494748 MYRIPQ8NFW9 859 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms