RNA–Protein interactions for RNA: ENST00000494327.1

HPS3-207, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 3

Gene HPS3, Length 556 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-207ENST00000494327 PSDA5PKW4 1024 aaPredicted RBP29.86■■■□□ 2.37
HPS3-207ENST00000494327 EIF4A2Q14240 407 aaKnown RBP29.86■■■□□ 2.37
HPS3-207ENST00000494327 EYA1Q99502 592 aa29.86■■■□□ 2.37
HPS3-207ENST00000494327 SBF2Q86WG5 1849 aa29.86■■■□□ 2.37
HPS3-207ENST00000494327 PLSCR1O15162 318 aa29.84■■■□□ 2.37
HPS3-207ENST00000494327 R3HDM1Q15032 1099 aaKnown RBP29.81■■■□□ 2.36
HPS3-207ENST00000494327 SYTL4Q96C24 671 aaPredicted RBP29.79■■■□□ 2.36
HPS3-207ENST00000494327 NBPF14Q5TI25 921 aa29.78■■■□□ 2.36
HPS3-207ENST00000494327 PCDH11XQ9BZA7 1347 aa29.75■■■□□ 2.35
HPS3-207ENST00000494327 PCDH11YQ9BZA8 1340 aa29.75■■■□□ 2.35
HPS3-207ENST00000494327 PRIM1P49642 420 aaKnown RBP29.75■■■□□ 2.35
HPS3-207ENST00000494327 PROM2Q8N271 834 aa29.75■■■□□ 2.35
HPS3-207ENST00000494327 NCAPD2Q15021 1401 aa29.74■■■□□ 2.35
HPS3-207ENST00000494327 MTHFSP49914 203 aa29.74■■■□□ 2.35
HPS3-207ENST00000494327 NHSQ6T4R5 1651 aa29.74■■■□□ 2.35
HPS3-207ENST00000494327 TXNRD1Q16881 649 aa29.73■■■□□ 2.35
HPS3-207ENST00000494327 SPG7Q9UQ90 795 aa29.73■■■□□ 2.35
HPS3-207ENST00000494327 RREB1Q92766 1687 aa29.72■■■□□ 2.35
HPS3-207ENST00000494327 IGSF1Q8N6C5 1336 aa29.71■■■□□ 2.35
HPS3-207ENST00000494327 SHANK3Q9BYB0 1731 aa29.71■■■□□ 2.35
HPS3-207ENST00000494327 CYP27B1O15528 508 aa29.71■■■□□ 2.35
HPS3-207ENST00000494327 NPC1L1Q9UHC9 1359 aa29.7■■■□□ 2.35
HPS3-207ENST00000494327 NUP188Q5SRE5 1749 aa29.7■■■□□ 2.34
HPS3-207ENST00000494327 KAT6BQ8WYB5 2073 aa29.69■■■□□ 2.34
HPS3-207ENST00000494327 IL13P35225 146 aa29.67■■■□□ 2.34
HPS3-207ENST00000494327 RGPD3A6NKT7 1758 aaPredicted RBP29.67■■■□□ 2.34
HPS3-207ENST00000494327 RGPD4Q7Z3J3 1758 aa29.67■■■□□ 2.34
HPS3-207ENST00000494327 AEBP1Q8IUX7 1158 aa29.65■■■□□ 2.34
HPS3-207ENST00000494327 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.65■■■□□ 2.34
HPS3-207ENST00000494327 BTAF1O14981 1849 aa29.64■■■□□ 2.34
HPS3-207ENST00000494327 SULT6B1Q6IMI4 303 aa29.64■■■□□ 2.34
HPS3-207ENST00000494327 ANO8Q9HCE9 1232 aaPredicted RBP29.64■■■□□ 2.34
HPS3-207ENST00000494327 DOT1LQ8TEK3 1739 aa29.64■■■□□ 2.34
HPS3-207ENST00000494327 MPRIPQ6WCQ1 1025 aa29.61■■■□□ 2.33
HPS3-207ENST00000494327 IFNL2Q8IZJ0 200 aa29.61■■■□□ 2.33
HPS3-207ENST00000494327 PKD1L3Q7Z443 1732 aa29.6■■■□□ 2.33
HPS3-207ENST00000494327 DIAPH1O60610 1272 aaKnown RBP29.6■■■□□ 2.33
HPS3-207ENST00000494327 PLEKHO1Q53GL0 409 aaPredicted RBP29.6■■■□□ 2.33
HPS3-207ENST00000494327 STK32BQ9NY57 414 aa29.6■■■□□ 2.33
HPS3-207ENST00000494327 PHKG2P15735 406 aa29.59■■■□□ 2.33
HPS3-207ENST00000494327 NKX1-1Q15270 411 aaPredicted RBP29.59■■■□□ 2.33
HPS3-207ENST00000494327 KCNQ4P56696 695 aa29.57■■■□□ 2.32
HPS3-207ENST00000494327 LRRC4BQ9NT99 713 aa29.57■■■□□ 2.32
HPS3-207ENST00000494327 HMOX1P09601 288 aa29.55■■■□□ 2.32
HPS3-207ENST00000494327 SLC15A2Q16348 729 aa29.55■■■□□ 2.32
HPS3-207ENST00000494327 AMOTQ4VCS5 1084 aa29.55■■■□□ 2.32
HPS3-207ENST00000494327 ZNF530Q6P9A1 599 aaPredicted RBP29.55■■■□□ 2.32
HPS3-207ENST00000494327 SLC27A3Q5K4L6 730 aa29.54■■■□□ 2.32
HPS3-207ENST00000494327 KDRP35968 1356 aa29.52■■■□□ 2.32
HPS3-207ENST00000494327 PLEKHG2Q9H7P9 1386 aa29.52■■■□□ 2.32
HPS3-207ENST00000494327 U2SURPO15042 1029 aaKnown RBP29.51■■■□□ 2.31
HPS3-207ENST00000494327 PIGBQ92521 554 aa29.51■■■□□ 2.31
HPS3-207ENST00000494327 CCNL1Q9UK58 526 aaPredicted RBP29.51■■■□□ 2.31
HPS3-207ENST00000494327 PPP2R1AP30153 589 aa29.5■■■□□ 2.31
HPS3-207ENST00000494327 CFAP53Q96M91 514 aa29.5■■■□□ 2.31
HPS3-207ENST00000494327 TMOD3Q9NYL9 352 aa29.5■■■□□ 2.31
HPS3-207ENST00000494327 HSP90AB1P08238 724 aaKnown RBP29.49■■■□□ 2.31
HPS3-207ENST00000494327 ZEB1P37275 1124 aaPredicted RBP29.49■■■□□ 2.31
HPS3-207ENST00000494327 C1orf141Q5JVX7 400 aa29.49■■■□□ 2.31
HPS3-207ENST00000494327 PDGFDQ9GZP0 370 aaPredicted RBP29.49■■■□□ 2.31
HPS3-207ENST00000494327 TOGARAM1Q9Y4F4 1720 aa29.48■■■□□ 2.31
HPS3-207ENST00000494327 DDX10Q13206 875 aaKnown RBP29.48■■■□□ 2.31
HPS3-207ENST00000494327 ZNF827Q17R98 1081 aa29.48■■■□□ 2.31
HPS3-207ENST00000494327 PALLDQ8WX93 1383 aa29.47■■■□□ 2.31
HPS3-207ENST00000494327 SMARCC1Q92922 1105 aaPredicted RBP29.46■■■□□ 2.31
HPS3-207ENST00000494327 DCAF5Q96JK2 942 aa29.46■■■□□ 2.31
HPS3-207ENST00000494327 COL3A1P02461 1466 aaPredicted RBP29.45■■■□□ 2.31
HPS3-207ENST00000494327 SPON1Q9HCB6 807 aa29.44■■■□□ 2.3
HPS3-207ENST00000494327 LRP5O75197 1615 aa29.44■■■□□ 2.3
HPS3-207ENST00000494327 SRCAPQ6ZRS2 3230 aa29.43■■■□□ 2.3
HPS3-207ENST00000494327 ZBTB7AO95365 584 aa29.43■■■□□ 2.3
HPS3-207ENST00000494327 AKT1S1Q96B36 256 aa29.43■■■□□ 2.3
HPS3-207ENST00000494327 ERVV-2B6SEH9 535 aa29.42■■■□□ 2.3
HPS3-207ENST00000494327 ASAP1Q9ULH1 1129 aa29.42■■■□□ 2.3
HPS3-207ENST00000494327 ITGB4P16144 1822 aa29.42■■■□□ 2.3
HPS3-207ENST00000494327 PAPPAQ13219 1627 aa29.42■■■□□ 2.3
HPS3-207ENST00000494327 LY75O60449 1722 aa29.41■■■□□ 2.3
HPS3-207ENST00000494327 CABP4P57796 275 aa29.41■■■□□ 2.3
HPS3-207ENST00000494327 TFCP2L1Q9NZI6 479 aa29.41■■■□□ 2.3
HPS3-207ENST00000494327 NUDCQ9Y266 331 aa29.4■■■□□ 2.3
HPS3-207ENST00000494327 AKAP4Q5JQC9 854 aa29.39■■■□□ 2.3
HPS3-207ENST00000494327 ATF5Q9Y2D1 282 aaPredicted RBP29.39■■■□□ 2.3
HPS3-207ENST00000494327 KDM6AO15550 1401 aaPredicted RBP29.38■■■□□ 2.29
HPS3-207ENST00000494327 MTHFSDQ2M296 383 aaKnown RBP29.38■■■□□ 2.29
HPS3-207ENST00000494327 ATG3Q9NT62 314 aa29.38■■■□□ 2.29
HPS3-207ENST00000494327 PPP1R1BQ9UD71 204 aaPredicted RBP29.36■■■□□ 2.29
HPS3-207ENST00000494327 CASZ1Q86V15 1759 aa29.35■■■□□ 2.29
HPS3-207ENST00000494327 LOC102724428A0A0B4J2F2 783 aa29.35■■■□□ 2.29
HPS3-207ENST00000494327 SIK1P57059 783 aa29.35■■■□□ 2.29
HPS3-207ENST00000494327 U2AF1L5P0DN76 240 aaPredicted RBP29.34■■■□□ 2.29
HPS3-207ENST00000494327 U2AF1Q01081 240 aaKnown RBP eCLIP29.34■■■□□ 2.29
HPS3-207ENST00000494327 NFATC2IPQ8NCF5 419 aa29.34■■■□□ 2.29
HPS3-207ENST00000494327 LGR6Q9HBX8 967 aa29.33■■■□□ 2.29
HPS3-207ENST00000494327 PNPLA7Q6ZV29 1317 aa29.32■■■□□ 2.28
HPS3-207ENST00000494327 RBM42Q9BTD8 480 aaKnown RBP29.32■■■□□ 2.28
HPS3-207ENST00000494327 MTFR1LQ9H019 292 aa29.32■■■□□ 2.28
HPS3-207ENST00000494327 MSH5O43196 834 aa29.31■■■□□ 2.28
HPS3-207ENST00000494327 HMGB2P26583 209 aaKnown RBP29.31■■■□□ 2.28
HPS3-207ENST00000494327 PRKAR2BP31323 418 aa29.31■■■□□ 2.28
HPS3-207ENST00000494327 ATP6V1AP38606 617 aa29.31■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms