RNA–Protein interactions for RNA: ENST00000493945.5

ACTB-213, Transcript of actin beta, humanhuman

TSL 5

Gene ACTB, Length 1,236 nt, Biotype retained intron, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-213ENST00000493945 GAS2L2Q8NHY3 880 aa19.72■□□□□ 0.75
ACTB-213ENST00000493945 RUNDC1Q96C34 613 aa19.72■□□□□ 0.75
ACTB-213ENST00000493945 RSPH6AQ9H0K4 717 aa19.72■□□□□ 0.75
ACTB-213ENST00000493945 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.72■□□□□ 0.75
ACTB-213ENST00000493945 ADAMTS8Q9UP79 889 aa19.72■□□□□ 0.75
ACTB-213ENST00000493945 PKD1L3Q7Z443 1732 aa19.71■□□□□ 0.75
ACTB-213ENST00000493945 GLI3P10071 1580 aa19.71■□□□□ 0.75
ACTB-213ENST00000493945 RXRBP28702 533 aa19.7■□□□□ 0.74
ACTB-213ENST00000493945 AEBP1Q8IUX7 1158 aa19.7■□□□□ 0.74
ACTB-213ENST00000493945 PCDH11XQ9BZA7 1347 aa19.7■□□□□ 0.74
ACTB-213ENST00000493945 PCDH11YQ9BZA8 1340 aa19.7■□□□□ 0.74
ACTB-213ENST00000493945 DISP2A7MBM2 1401 aa19.69■□□□□ 0.74
ACTB-213ENST00000493945 TNS2Q63HR2 1409 aa19.69■□□□□ 0.74
ACTB-213ENST00000493945 DDB1Q16531 1140 aa19.69■□□□□ 0.74
ACTB-213ENST00000493945 FAM98CQ17RN3 349 aaKnown RBP19.69■□□□□ 0.74
ACTB-213ENST00000493945 C1orf141Q5JVX7 400 aa19.69■□□□□ 0.74
ACTB-213ENST00000493945 MEGF6O75095 1541 aa19.69■□□□□ 0.74
ACTB-213ENST00000493945 THSD7AQ9UPZ6 1657 aa19.68■□□□□ 0.74
ACTB-213ENST00000493945 EXOC5O00471 708 aa19.68■□□□□ 0.74
ACTB-213ENST00000493945 LMOD3Q0VAK6 560 aa19.68■□□□□ 0.74
ACTB-213ENST00000493945 NGEFQ8N5V2 710 aa19.68■□□□□ 0.74
ACTB-213ENST00000493945 LRRC37A3O60309 1634 aa19.68■□□□□ 0.74
ACTB-213ENST00000493945 HSP90AB1P08238 724 aaKnown RBP19.67■□□□□ 0.74
ACTB-213ENST00000493945 ZCRB1Q8TBF4 217 aaKnown RBP19.67■□□□□ 0.74
ACTB-213ENST00000493945 PDE3BQ13370 1112 aa19.65■□□□□ 0.74
ACTB-213ENST00000493945 ZNF530Q6P9A1 599 aaPredicted RBP19.64■□□□□ 0.73
ACTB-213ENST00000493945 CCDC146Q8IYE0 955 aa19.64■□□□□ 0.73
ACTB-213ENST00000493945 IFNL2Q8IZJ0 200 aa19.63■□□□□ 0.73
ACTB-213ENST00000493945 RTF1Q92541 710 aaKnown RBP19.63■□□□□ 0.73
ACTB-213ENST00000493945 PLEKHF1Q96S99 279 aa19.63■□□□□ 0.73
ACTB-213ENST00000493945 ONECUT3O60422 494 aaPredicted RBP19.62■□□□□ 0.73
ACTB-213ENST00000493945 NFE2L2Q16236 605 aa19.62■□□□□ 0.73
ACTB-213ENST00000493945 AKAP4Q5JQC9 854 aa19.62■□□□□ 0.73
ACTB-213ENST00000493945 MAP3K5Q99683 1374 aa19.61■□□□□ 0.73
ACTB-213ENST00000493945 NCBP3Q53F19 620 aaKnown RBP19.61■□□□□ 0.73
ACTB-213ENST00000493945 SEPT12Q8IYM1 358 aa19.61■□□□□ 0.73
ACTB-213ENST00000493945 HTATSF1O43719 755 aaKnown RBP19.6■□□□□ 0.73
ACTB-213ENST00000493945 CALD1Q05682 793 aaKnown RBP19.6■□□□□ 0.73
ACTB-213ENST00000493945 SHANK3Q9BYB0 1731 aa19.59■□□□□ 0.73
ACTB-213ENST00000493945 DLG5Q8TDM6 1919 aa19.59■□□□□ 0.73
ACTB-213ENST00000493945 GNAT3A8MTJ3 354 aa19.59■□□□□ 0.73
ACTB-213ENST00000493945 RGS17Q9UGC6 210 aaPredicted RBP19.59■□□□□ 0.73
ACTB-213ENST00000493945 MTHFSDQ2M296 383 aaKnown RBP19.58■□□□□ 0.72
ACTB-213ENST00000493945 DDX54Q8TDD1 881 aaKnown RBP19.58■□□□□ 0.72
ACTB-213ENST00000493945 APAF1O14727 1248 aa19.57■□□□□ 0.72
ACTB-213ENST00000493945 TMPOP42166 694 aaKnown RBP19.57■□□□□ 0.72
ACTB-213ENST00000493945 RIPK4P57078 832 aa19.57■□□□□ 0.72
ACTB-213ENST00000493945 POTEAQ6S8J7 498 aa19.57■□□□□ 0.72
ACTB-213ENST00000493945 PHACTR3Q96KR7 559 aa19.57■□□□□ 0.72
ACTB-213ENST00000493945 VIRMAQ69YN4 1812 aaKnown RBP19.56■□□□□ 0.72
ACTB-213ENST00000493945 PHKG2P15735 406 aa19.56■□□□□ 0.72
ACTB-213ENST00000493945 KRT27Q7Z3Y8 459 aa19.56■□□□□ 0.72
ACTB-213ENST00000493945 DCAF5Q96JK2 942 aa19.56■□□□□ 0.72
ACTB-213ENST00000493945 RGS12O14924 1447 aa19.56■□□□□ 0.72
ACTB-213ENST00000493945 BRWD3Q6RI45 1802 aa19.55■□□□□ 0.72
ACTB-213ENST00000493945 SCN11AQ9UI33 1791 aa19.55■□□□□ 0.72
ACTB-213ENST00000493945 HNRNPUQ00839 825 aaKnown RBP eCLIP19.54■□□□□ 0.72
ACTB-213ENST00000493945 NEUROD2Q15784 382 aa19.54■□□□□ 0.72
ACTB-213ENST00000493945 CCDC27Q2M243 656 aa19.54■□□□□ 0.72
ACTB-213ENST00000493945 KAT6BQ8WYB5 2073 aa19.54■□□□□ 0.72
ACTB-213ENST00000493945 CYP27B1O15528 508 aa19.52■□□□□ 0.72
ACTB-213ENST00000493945 TEFQ10587 303 aa19.52■□□□□ 0.72
ACTB-213ENST00000493945 NKX1-1Q15270 411 aaPredicted RBP19.52■□□□□ 0.72
ACTB-213ENST00000493945 BCL9O00512 1426 aa19.51■□□□□ 0.71
ACTB-213ENST00000493945 FAM196AQ6ZSG2 479 aa19.51■□□□□ 0.71
ACTB-213ENST00000493945 RRP7AQ9Y3A4 280 aaKnown RBP19.51■□□□□ 0.71
ACTB-213ENST00000493945 DOT1LQ8TEK3 1739 aa19.51■□□□□ 0.71
ACTB-213ENST00000493945 ADAMTS7Q9UKP4 1686 aa19.5■□□□□ 0.71
ACTB-213ENST00000493945 ERVV-2B6SEH9 535 aa19.49■□□□□ 0.71
ACTB-213ENST00000493945 RNMTO43148 476 aaKnown RBP19.48■□□□□ 0.71
ACTB-213ENST00000493945 MPRIPQ6WCQ1 1025 aa19.48■□□□□ 0.71
ACTB-213ENST00000493945 MARCH10Q8NA82 808 aaPredicted RBP19.48■□□□□ 0.71
ACTB-213ENST00000493945 MRC1P22897 1456 aa19.48■□□□□ 0.71
ACTB-213ENST00000493945 CABP4P57796 275 aa19.47■□□□□ 0.71
ACTB-213ENST00000493945 TMOD3Q9NYL9 352 aa19.47■□□□□ 0.71
ACTB-213ENST00000493945 ZBED9Q6R2W3 1325 aa19.47■□□□□ 0.71
ACTB-213ENST00000493945 NHSQ6T4R5 1651 aa19.46■□□□□ 0.71
ACTB-213ENST00000493945 CEMIPQ8WUJ3 1361 aa19.46■□□□□ 0.71
ACTB-213ENST00000493945 KDM6AO15550 1401 aaPredicted RBP19.46■□□□□ 0.71
ACTB-213ENST00000493945 WDR63Q8IWG1 891 aa19.46■□□□□ 0.71
ACTB-213ENST00000493945 SYTL4Q96C24 671 aaPredicted RBP19.45■□□□□ 0.7
ACTB-213ENST00000493945 BABAM1Q9NWV8 329 aa19.45■□□□□ 0.7
ACTB-213ENST00000493945 SALL2Q9Y467 1007 aaPredicted RBP19.45■□□□□ 0.7
ACTB-213ENST00000493945 ITGB4P16144 1822 aa19.45■□□□□ 0.7
ACTB-213ENST00000493945 IL16Q14005 1332 aa19.45■□□□□ 0.7
ACTB-213ENST00000493945 GNAI1P63096 354 aa19.44■□□□□ 0.7
ACTB-213ENST00000493945 MCM10Q7L590 875 aa19.44■□□□□ 0.7
ACTB-213ENST00000493945 WWC1Q8IX03 1113 aa19.44■□□□□ 0.7
ACTB-213ENST00000493945 SLC52A2Q9HAB3 445 aa19.44■□□□□ 0.7
ACTB-213ENST00000493945 TOGARAM1Q9Y4F4 1720 aa19.44■□□□□ 0.7
ACTB-213ENST00000493945 SBF2Q86WG5 1849 aa19.44■□□□□ 0.7
ACTB-213ENST00000493945 HMGB2P26583 209 aaKnown RBP19.43■□□□□ 0.7
ACTB-213ENST00000493945 MYH16Q9H6N6 1097 aa19.43■□□□□ 0.7
ACTB-213ENST00000493945 TRIM35Q9UPQ4 493 aa19.43■□□□□ 0.7
ACTB-213ENST00000493945 SIPA1L3O60292 1781 aaPredicted RBP19.42■□□□□ 0.7
ACTB-213ENST00000493945 TTC5Q8N0Z6 440 aa19.42■□□□□ 0.7
ACTB-213ENST00000493945 IFT57Q9NWB7 429 aa19.42■□□□□ 0.7
ACTB-213ENST00000493945 GOLGA2Q08379 1002 aa19.41■□□□□ 0.7
ACTB-213ENST00000493945 TAF7Q15545 349 aaPredicted RBP19.41■□□□□ 0.7
ACTB-213ENST00000493945 YTHDC1Q96MU7 727 aaKnown RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms