RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 FAM182BQ5T319 152 aa17.21■□□□□ 0.35
UPF3A-210ENST00000493727 RREB1Q92766 1687 aa17.2■□□□□ 0.34
UPF3A-210ENST00000493727 C2orf72A6NCS6 295 aa17.2■□□□□ 0.34
UPF3A-210ENST00000493727 GPHNQ9NQX3 736 aaPredicted RBP17.2■□□□□ 0.34
UPF3A-210ENST00000493727 TOPAZ1Q8N9V7 1692 aa17.2■□□□□ 0.34
UPF3A-210ENST00000493727 NGDNQ8NEJ9 315 aaKnown RBP17.19■□□□□ 0.34
UPF3A-210ENST00000493727 SPATA31A1Q5TZJ5 1347 aa17.18■□□□□ 0.34
UPF3A-210ENST00000493727 KIAA0232Q92628 1395 aa17.17■□□□□ 0.34
UPF3A-210ENST00000493727 PDE4AP27815 886 aa17.17■□□□□ 0.34
UPF3A-210ENST00000493727 R3HDM1Q15032 1099 aaKnown RBP17.17■□□□□ 0.34
UPF3A-210ENST00000493727 NUP188Q5SRE5 1749 aa17.17■□□□□ 0.34
UPF3A-210ENST00000493727 NRKQ7Z2Y5 1582 aa17.17■□□□□ 0.34
UPF3A-210ENST00000493727 TMC2Q8TDI7 906 aa17.17■□□□□ 0.34
UPF3A-210ENST00000493727 PRDM11Q9NQV5 511 aa17.17■□□□□ 0.34
UPF3A-210ENST00000493727 EZH2Q15910 746 aaKnown RBP17.16■□□□□ 0.34
UPF3A-210ENST00000493727 LMO7Q8WWI1 1683 aa17.16■□□□□ 0.34
UPF3A-210ENST00000493727 NUDT16Q96DE0 195 aaKnown RBP17.15■□□□□ 0.34
UPF3A-210ENST00000493727 CAMKK2Q96RR4 588 aa17.15■□□□□ 0.34
UPF3A-210ENST00000493727 PARD3Q8TEW0 1356 aa17.15■□□□□ 0.34
UPF3A-210ENST00000493727 POLR3AO14802 1390 aaPredicted RBP17.13■□□□□ 0.33
UPF3A-210ENST00000493727 SSH2Q76I76 1423 aa17.13■□□□□ 0.33
UPF3A-210ENST00000493727 MFSD10Q14728 455 aa17.12■□□□□ 0.33
UPF3A-210ENST00000493727 CHRNA2Q15822 529 aa17.12■□□□□ 0.33
UPF3A-210ENST00000493727 FAM196AQ6ZSG2 479 aa17.12■□□□□ 0.33
UPF3A-210ENST00000493727 CAMTA1Q9Y6Y1 1673 aa17.11■□□□□ 0.33
UPF3A-210ENST00000493727 TRIM37O94972 964 aa17.11■□□□□ 0.33
UPF3A-210ENST00000493727 LARP6Q9BRS8 491 aaKnown RBP17.11■□□□□ 0.33
UPF3A-210ENST00000493727 CDK19Q9BWU1 502 aa17.11■□□□□ 0.33
UPF3A-210ENST00000493727 PARP4Q9UKK3 1724 aaKnown RBP17.1■□□□□ 0.33
UPF3A-210ENST00000493727 FOXK1P85037 733 aa17.1■□□□□ 0.33
UPF3A-210ENST00000493727 BARGINQ6ZT62 677 aa17.1■□□□□ 0.33
UPF3A-210ENST00000493727 DSG2Q14126 1118 aa17.09■□□□□ 0.33
UPF3A-210ENST00000493727 STRN4Q9NRL3 753 aa17.09■□□□□ 0.33
UPF3A-210ENST00000493727 CPDO75976 1380 aa17.08■□□□□ 0.32
UPF3A-210ENST00000493727 NBPF8Q3BBV2 869 aa17.08■□□□□ 0.32
UPF3A-210ENST00000493727 USP19O94966 1318 aa17.07■□□□□ 0.32
UPF3A-210ENST00000493727 ACEP12821 1306 aa17.07■□□□□ 0.32
UPF3A-210ENST00000493727 CENPJQ9HC77 1338 aaPredicted RBP17.07■□□□□ 0.32
UPF3A-210ENST00000493727 PLEKHG3A1L390 1219 aa17.07■□□□□ 0.32
UPF3A-210ENST00000493727 ZC3H6P61129 1189 aaKnown RBP17.07■□□□□ 0.32
UPF3A-210ENST00000493727 RGPD3A6NKT7 1758 aaPredicted RBP17.07■□□□□ 0.32
UPF3A-210ENST00000493727 RGPD4Q7Z3J3 1758 aa17.07■□□□□ 0.32
UPF3A-210ENST00000493727 PEAK1Q9H792 1746 aa17.07■□□□□ 0.32
UPF3A-210ENST00000493727 APBA3O96018 575 aa17.06■□□□□ 0.32
UPF3A-210ENST00000493727 NBPF1Q3BBV0 1214 aa17.06■□□□□ 0.32
UPF3A-210ENST00000493727 QRICH2Q9H0J4 1663 aa17.06■□□□□ 0.32
UPF3A-210ENST00000493727 UTRNP46939 3433 aa17.05■□□□□ 0.32
UPF3A-210ENST00000493727 NUTM2GQ5VZR2 741 aa17.05■□□□□ 0.32
UPF3A-210ENST00000493727 DDX27Q96GQ7 796 aaKnown RBP17.05■□□□□ 0.32
UPF3A-210ENST00000493727 SBF2Q86WG5 1849 aa17.05■□□□□ 0.32
UPF3A-210ENST00000493727 BRD4O60885 1362 aaPredicted RBP17.04■□□□□ 0.32
UPF3A-210ENST00000493727 ROCK2O75116 1388 aaKnown RBP17.04■□□□□ 0.32
UPF3A-210ENST00000493727 SRPK2P78362 688 aaKnown RBP17.04■□□□□ 0.32
UPF3A-210ENST00000493727 PPP1R15BQ5SWA1 713 aa17.04■□□□□ 0.32
UPF3A-210ENST00000493727 LARP1Q6PKG0 1096 aaKnown RBP17.04■□□□□ 0.32
UPF3A-210ENST00000493727 USP35Q9P2H5 1018 aa17.04■□□□□ 0.32
UPF3A-210ENST00000493727 COL5A2P05997 1499 aaPredicted RBP17.04■□□□□ 0.32
UPF3A-210ENST00000493727 TCP11L2Q8N4U5 519 aa17.03■□□□□ 0.32
UPF3A-210ENST00000493727 LRRC37A3O60309 1634 aa17.03■□□□□ 0.32
UPF3A-210ENST00000493727 TRPM1Q7Z4N2 1603 aa17.03■□□□□ 0.32
UPF3A-210ENST00000493727 PLPP6Q8IY26 295 aa17.02■□□□□ 0.32
UPF3A-210ENST00000493727 WNK3Q9BYP7 1800 aa17.02■□□□□ 0.31
UPF3A-210ENST00000493727 PPIP5K1Q6PFW1 1433 aa17.02■□□□□ 0.31
UPF3A-210ENST00000493727 PDE3BQ13370 1112 aa17.01■□□□□ 0.31
UPF3A-210ENST00000493727 VSIG10Q8N0Z9 540 aa17.01■□□□□ 0.31
UPF3A-210ENST00000493727 ABTB2Q8N961 1025 aa17.01■□□□□ 0.31
UPF3A-210ENST00000493727 NLRP13Q86W25 1043 aa17■□□□□ 0.31
UPF3A-210ENST00000493727 CARD11Q9BXL7 1154 aa17■□□□□ 0.31
UPF3A-210ENST00000493727 THRAP3Q9Y2W1 955 aaKnown RBP17■□□□□ 0.31
UPF3A-210ENST00000493727 SLIT3O75094 1523 aa17■□□□□ 0.31
UPF3A-210ENST00000493727 CASZ1Q86V15 1759 aa17■□□□□ 0.31
UPF3A-210ENST00000493727 EVA1CP58658 441 aa16.99■□□□□ 0.31
UPF3A-210ENST00000493727 COL18A1P39060 1754 aa16.99■□□□□ 0.31
UPF3A-210ENST00000493727 OVOS2A0A0G2JMS6 1433 aa16.98■□□□□ 0.31
UPF3A-210ENST00000493727 OVOS2A0A0J9YW53 1432 aa16.98■□□□□ 0.31
UPF3A-210ENST00000493727 CRB1P82279 1406 aa16.98■□□□□ 0.31
UPF3A-210ENST00000493727 OVOS2Q6IE36 1432 aa16.98■□□□□ 0.31
UPF3A-210ENST00000493727 HOXB3P14651 431 aaPredicted RBP16.98■□□□□ 0.31
UPF3A-210ENST00000493727 EVC2Q86UK5 1308 aa16.97■□□□□ 0.31
UPF3A-210ENST00000493727 GCP02774 474 aa16.97■□□□□ 0.31
UPF3A-210ENST00000493727 NBPF14Q5TI25 921 aa16.97■□□□□ 0.31
UPF3A-210ENST00000493727 NINLQ9Y2I6 1382 aa16.96■□□□□ 0.31
UPF3A-210ENST00000493727 PIK3C2AO00443 1686 aa16.96■□□□□ 0.31
UPF3A-210ENST00000493727 USP6P35125 1406 aa16.95■□□□□ 0.3
UPF3A-210ENST00000493727 AKAP12Q02952 1782 aa16.94■□□□□ 0.3
UPF3A-210ENST00000493727 C11orf95C9JLR9 678 aaPredicted RBP16.94■□□□□ 0.3
UPF3A-210ENST00000493727 SLC24A1O60721 1099 aa16.94■□□□□ 0.3
UPF3A-210ENST00000493727 YY1P25490 414 aa16.94■□□□□ 0.3
UPF3A-210ENST00000493727 SPON1Q9HCB6 807 aa16.94■□□□□ 0.3
UPF3A-210ENST00000493727 WDR70Q9NW82 654 aa16.94■□□□□ 0.3
UPF3A-210ENST00000493727 AATKQ6ZMQ8 1374 aa16.93■□□□□ 0.3
UPF3A-210ENST00000493727 USP47Q96K76 1375 aa16.93■□□□□ 0.3
UPF3A-210ENST00000493727 KCNQ2O43526 872 aa16.93■□□□□ 0.3
UPF3A-210ENST00000493727 CABP1Q9NZU7 370 aa16.93■□□□□ 0.3
UPF3A-210ENST00000493727 SNPHO15079 494 aa16.92■□□□□ 0.3
UPF3A-210ENST00000493727 EIF4G2P78344 907 aaKnown RBP eCLIP16.92■□□□□ 0.3
UPF3A-210ENST00000493727 CAMK2BQ13554 666 aa16.92■□□□□ 0.3
UPF3A-210ENST00000493727 ANO8Q9HCE9 1232 aaPredicted RBP16.92■□□□□ 0.3
UPF3A-210ENST00000493727 BCL9O00512 1426 aa16.92■□□□□ 0.3
UPF3A-210ENST00000493727 PLSCR1O15162 318 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms