RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 RGPD3A6NKT7 1758 aaPredicted RBP29.01■■■□□ 2.23
LIME1-207ENST00000489212 RGPD4Q7Z3J3 1758 aa29.01■■■□□ 2.23
LIME1-207ENST00000489212 PLSCR1O15162 318 aa29.01■■■□□ 2.23
LIME1-207ENST00000489212 ZCRB1Q8TBF4 217 aaKnown RBP29■■■□□ 2.23
LIME1-207ENST00000489212 KAT6BQ8WYB5 2073 aa29■■■□□ 2.23
LIME1-207ENST00000489212 PER1O15534 1290 aaPredicted RBP28.99■■■□□ 2.23
LIME1-207ENST00000489212 MORC1Q86VD1 984 aa28.99■■■□□ 2.23
LIME1-207ENST00000489212 NCAPD2Q15021 1401 aa28.98■■■□□ 2.23
LIME1-207ENST00000489212 RAPGEF4Q8WZA2 1011 aa28.98■■■□□ 2.23
LIME1-207ENST00000489212 R3HDM1Q15032 1099 aaKnown RBP28.97■■■□□ 2.23
LIME1-207ENST00000489212 PROM2Q8N271 834 aa28.96■■■□□ 2.23
LIME1-207ENST00000489212 EYA1Q99502 592 aa28.96■■■□□ 2.23
LIME1-207ENST00000489212 TATP17735 454 aaPredicted RBP28.95■■■□□ 2.22
LIME1-207ENST00000489212 EIF4A2Q14240 407 aaKnown RBP28.95■■■□□ 2.22
LIME1-207ENST00000489212 BTAF1O14981 1849 aa28.93■■■□□ 2.22
LIME1-207ENST00000489212 DOT1LQ8TEK3 1739 aa28.9■■■□□ 2.22
LIME1-207ENST00000489212 NBPF14Q5TI25 921 aa28.89■■■□□ 2.22
LIME1-207ENST00000489212 TXNRD1Q16881 649 aa28.88■■■□□ 2.21
LIME1-207ENST00000489212 PKD1L3Q7Z443 1732 aa28.88■■■□□ 2.21
LIME1-207ENST00000489212 CC2D1BQ5T0F9 858 aaKnown RBP28.87■■■□□ 2.21
LIME1-207ENST00000489212 PRIM1P49642 420 aaKnown RBP28.86■■■□□ 2.21
LIME1-207ENST00000489212 ANO8Q9HCE9 1232 aaPredicted RBP28.86■■■□□ 2.21
LIME1-207ENST00000489212 PCDH11XQ9BZA7 1347 aa28.86■■■□□ 2.21
LIME1-207ENST00000489212 PCDH11YQ9BZA8 1340 aa28.86■■■□□ 2.21
LIME1-207ENST00000489212 CYP27B1O15528 508 aa28.85■■■□□ 2.21
LIME1-207ENST00000489212 SYTL4Q96C24 671 aaPredicted RBP28.84■■■□□ 2.21
LIME1-207ENST00000489212 IGSF1Q8N6C5 1336 aa28.84■■■□□ 2.21
LIME1-207ENST00000489212 NPC1L1Q9UHC9 1359 aa28.82■■■□□ 2.2
LIME1-207ENST00000489212 LRP5O75197 1615 aa28.82■■■□□ 2.2
LIME1-207ENST00000489212 MTHFSP49914 203 aa28.79■■■□□ 2.2
LIME1-207ENST00000489212 CNGB1Q14028 1251 aaPredicted RBP28.78■■■□□ 2.2
LIME1-207ENST00000489212 SPG7Q9UQ90 795 aa28.78■■■□□ 2.2
LIME1-207ENST00000489212 TOGARAM1Q9Y4F4 1720 aa28.77■■■□□ 2.2
LIME1-207ENST00000489212 IL13P35225 146 aa28.77■■■□□ 2.2
LIME1-207ENST00000489212 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.77■■■□□ 2.2
LIME1-207ENST00000489212 AEBP1Q8IUX7 1158 aa28.76■■■□□ 2.19
LIME1-207ENST00000489212 LRRC4BQ9NT99 713 aa28.76■■■□□ 2.19
LIME1-207ENST00000489212 PAPPAQ13219 1627 aa28.76■■■□□ 2.19
LIME1-207ENST00000489212 NKX1-1Q15270 411 aaPredicted RBP28.74■■■□□ 2.19
LIME1-207ENST00000489212 PLEKHG2Q9H7P9 1386 aa28.73■■■□□ 2.19
LIME1-207ENST00000489212 LY75O60449 1722 aa28.72■■■□□ 2.19
LIME1-207ENST00000489212 STK32BQ9NY57 414 aa28.72■■■□□ 2.19
LIME1-207ENST00000489212 ITGB4P16144 1822 aa28.71■■■□□ 2.19
LIME1-207ENST00000489212 PHKG2P15735 406 aa28.71■■■□□ 2.19
LIME1-207ENST00000489212 SLC15A2Q16348 729 aa28.71■■■□□ 2.19
LIME1-207ENST00000489212 PDGFDQ9GZP0 370 aaPredicted RBP28.71■■■□□ 2.19
LIME1-207ENST00000489212 CASZ1Q86V15 1759 aa28.7■■■□□ 2.19
LIME1-207ENST00000489212 KCNQ4P56696 695 aa28.7■■■□□ 2.18
LIME1-207ENST00000489212 SULT6B1Q6IMI4 303 aa28.7■■■□□ 2.18
LIME1-207ENST00000489212 SLC27A3Q5K4L6 730 aa28.69■■■□□ 2.18
LIME1-207ENST00000489212 MPRIPQ6WCQ1 1025 aa28.69■■■□□ 2.18
LIME1-207ENST00000489212 IFNL2Q8IZJ0 200 aa28.69■■■□□ 2.18
LIME1-207ENST00000489212 KDRP35968 1356 aa28.69■■■□□ 2.18
LIME1-207ENST00000489212 ZNF827Q17R98 1081 aa28.67■■■□□ 2.18
LIME1-207ENST00000489212 COL3A1P02461 1466 aaPredicted RBP28.66■■■□□ 2.18
LIME1-207ENST00000489212 PLEKHO1Q53GL0 409 aaPredicted RBP28.65■■■□□ 2.18
LIME1-207ENST00000489212 PIGBQ92521 554 aa28.65■■■□□ 2.18
LIME1-207ENST00000489212 DIAPH1O60610 1272 aaKnown RBP28.63■■■□□ 2.17
LIME1-207ENST00000489212 AKT1S1Q96B36 256 aa28.63■■■□□ 2.17
LIME1-207ENST00000489212 CCNL1Q9UK58 526 aaPredicted RBP28.63■■■□□ 2.17
LIME1-207ENST00000489212 AMOTQ4VCS5 1084 aa28.62■■■□□ 2.17
LIME1-207ENST00000489212 ZNF530Q6P9A1 599 aaPredicted RBP28.62■■■□□ 2.17
LIME1-207ENST00000489212 PALLDQ8WX93 1383 aa28.62■■■□□ 2.17
LIME1-207ENST00000489212 HMOX1P09601 288 aa28.6■■■□□ 2.17
LIME1-207ENST00000489212 SPON1Q9HCB6 807 aa28.6■■■□□ 2.17
LIME1-207ENST00000489212 ZBTB7AO95365 584 aa28.58■■■□□ 2.17
LIME1-207ENST00000489212 TMOD3Q9NYL9 352 aa28.58■■■□□ 2.17
LIME1-207ENST00000489212 KDM6AO15550 1401 aaPredicted RBP28.58■■■□□ 2.17
LIME1-207ENST00000489212 TUBGCP6Q96RT7 1819 aa28.57■■■□□ 2.16
LIME1-207ENST00000489212 HSP90AB1P08238 724 aaKnown RBP28.56■■■□□ 2.16
LIME1-207ENST00000489212 SMARCC1Q92922 1105 aaPredicted RBP28.56■■■□□ 2.16
LIME1-207ENST00000489212 DCAF5Q96JK2 942 aa28.56■■■□□ 2.16
LIME1-207ENST00000489212 PPP2R1AP30153 589 aa28.55■■■□□ 2.16
LIME1-207ENST00000489212 QSER1Q2KHR3 1735 aa28.55■■■□□ 2.16
LIME1-207ENST00000489212 ASAP1Q9ULH1 1129 aa28.54■■■□□ 2.16
LIME1-207ENST00000489212 C5P01031 1676 aa28.54■■■□□ 2.16
LIME1-207ENST00000489212 TAF1LQ8IZX4 1826 aa28.53■■■□□ 2.16
LIME1-207ENST00000489212 ERVV-2B6SEH9 535 aa28.53■■■□□ 2.16
LIME1-207ENST00000489212 C1orf141Q5JVX7 400 aa28.53■■■□□ 2.16
LIME1-207ENST00000489212 ATF5Q9Y2D1 282 aaPredicted RBP28.53■■■□□ 2.16
LIME1-207ENST00000489212 PNPLA7Q6ZV29 1317 aa28.52■■■□□ 2.16
LIME1-207ENST00000489212 U2SURPO15042 1029 aaKnown RBP28.51■■■□□ 2.15
LIME1-207ENST00000489212 PTGER2P43116 358 aa28.51■■■□□ 2.15
LIME1-207ENST00000489212 ATG3Q9NT62 314 aa28.51■■■□□ 2.15
LIME1-207ENST00000489212 TFCP2L1Q9NZI6 479 aa28.51■■■□□ 2.15
LIME1-207ENST00000489212 MTFR1LQ9H019 292 aa28.49■■■□□ 2.15
LIME1-207ENST00000489212 LOC102724428A0A0B4J2F2 783 aa28.48■■■□□ 2.15
LIME1-207ENST00000489212 SIK1P57059 783 aa28.48■■■□□ 2.15
LIME1-207ENST00000489212 CFAP53Q96M91 514 aa28.48■■■□□ 2.15
LIME1-207ENST00000489212 SCN11AQ9UI33 1791 aa28.47■■■□□ 2.15
LIME1-207ENST00000489212 MTHFSDQ2M296 383 aaKnown RBP28.47■■■□□ 2.15
LIME1-207ENST00000489212 AKAP4Q5JQC9 854 aa28.47■■■□□ 2.15
LIME1-207ENST00000489212 CABP4P57796 275 aa28.46■■■□□ 2.15
LIME1-207ENST00000489212 SGIP1Q9BQI5 828 aa28.46■■■□□ 2.15
LIME1-207ENST00000489212 PPP1R1BQ9UD71 204 aaPredicted RBP28.46■■■□□ 2.15
LIME1-207ENST00000489212 C4BP0C0L5 1744 aa28.45■■■□□ 2.14
LIME1-207ENST00000489212 ITPK1Q13572 414 aa28.43■■■□□ 2.14
LIME1-207ENST00000489212 NFATC2IPQ8NCF5 419 aa28.43■■■□□ 2.14
LIME1-207ENST00000489212 LINC00116Q8NCU8 138 aa28.43■■■□□ 2.14
LIME1-207ENST00000489212 LGR6Q9HBX8 967 aa28.43■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms