RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 TNNT2P45379 298 aaPredicted RBP34.37■■■■□ 3.09
HMGN1-217ENST00000489072 WASHC2AQ641Q2 1341 aa34.36■■■■□ 3.09
HMGN1-217ENST00000489072 PROM2Q8N271 834 aa34.36■■■■□ 3.09
HMGN1-217ENST00000489072 BTAF1O14981 1849 aa34.36■■■■□ 3.09
HMGN1-217ENST00000489072 LRP5O75197 1615 aa34.35■■■■□ 3.09
HMGN1-217ENST00000489072 ZCRB1Q8TBF4 217 aaKnown RBP34.35■■■■□ 3.09
HMGN1-217ENST00000489072 NSD2O96028 1365 aa34.35■■■■□ 3.09
HMGN1-217ENST00000489072 NBPF14Q5TI25 921 aa34.33■■■■□ 3.09
HMGN1-217ENST00000489072 RAPGEF4Q8WZA2 1011 aa34.31■■■■□ 3.08
HMGN1-217ENST00000489072 NCAPD2Q15021 1401 aa34.3■■■■□ 3.08
HMGN1-217ENST00000489072 DOT1LQ8TEK3 1739 aa34.3■■■■□ 3.08
HMGN1-217ENST00000489072 KNSTRNQ9Y448 316 aa34.29■■■■□ 3.08
HMGN1-217ENST00000489072 TATP17735 454 aaPredicted RBP34.28■■■■□ 3.08
HMGN1-217ENST00000489072 TXNRD1Q16881 649 aa34.28■■■■□ 3.08
HMGN1-217ENST00000489072 ANO8Q9HCE9 1232 aaPredicted RBP34.27■■■■□ 3.08
HMGN1-217ENST00000489072 EYA1Q99502 592 aa34.25■■■■□ 3.07
HMGN1-217ENST00000489072 MORC1Q86VD1 984 aa34.24■■■■□ 3.07
HMGN1-217ENST00000489072 AMER1Q5JTC6 1135 aaPredicted RBP34.23■■■■□ 3.07
HMGN1-217ENST00000489072 PKD1L3Q7Z443 1732 aa34.23■■■■□ 3.07
HMGN1-217ENST00000489072 EIF4A2Q14240 407 aaKnown RBP34.22■■■■□ 3.07
HMGN1-217ENST00000489072 PRIM1P49642 420 aaKnown RBP34.2■■■■□ 3.07
HMGN1-217ENST00000489072 PER1O15534 1290 aaPredicted RBP34.18■■■■□ 3.06
HMGN1-217ENST00000489072 SYTL4Q96C24 671 aaPredicted RBP34.18■■■■□ 3.06
HMGN1-217ENST00000489072 PCDH11XQ9BZA7 1347 aa34.18■■■■□ 3.06
HMGN1-217ENST00000489072 PCDH11YQ9BZA8 1340 aa34.18■■■■□ 3.06
HMGN1-217ENST00000489072 CYP27B1O15528 508 aa34.16■■■■□ 3.06
HMGN1-217ENST00000489072 PAPPAQ13219 1627 aa34.15■■■■□ 3.06
HMGN1-217ENST00000489072 CASZ1Q86V15 1759 aa34.14■■■■□ 3.06
HMGN1-217ENST00000489072 TOGARAM1Q9Y4F4 1720 aa34.12■■■■□ 3.05
HMGN1-217ENST00000489072 IGSF1Q8N6C5 1336 aa34.11■■■■□ 3.05
HMGN1-217ENST00000489072 LRRC4BQ9NT99 713 aa34.11■■■■□ 3.05
HMGN1-217ENST00000489072 STK32BQ9NY57 414 aa34.11■■■■□ 3.05
HMGN1-217ENST00000489072 LY75O60449 1722 aa34.1■■■■□ 3.05
HMGN1-217ENST00000489072 SLC15A2Q16348 729 aa34.09■■■■□ 3.05
HMGN1-217ENST00000489072 PDGFDQ9GZP0 370 aaPredicted RBP34.09■■■■□ 3.05
HMGN1-217ENST00000489072 ITGB4P16144 1822 aa34.07■■■■□ 3.04
HMGN1-217ENST00000489072 SPG7Q9UQ90 795 aa34.07■■■■□ 3.04
HMGN1-217ENST00000489072 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP34.06■■■■□ 3.048e-8■■□□□ 13
HMGN1-217ENST00000489072 CC2D1BQ5T0F9 858 aaKnown RBP34.05■■■■□ 3.04
HMGN1-217ENST00000489072 NKX1-1Q15270 411 aaPredicted RBP34.03■■■■□ 3.04
HMGN1-217ENST00000489072 SLC27A3Q5K4L6 730 aa34.03■■■■□ 3.04
HMGN1-217ENST00000489072 KCNQ4P56696 695 aa34.02■■■■□ 3.04
HMGN1-217ENST00000489072 ZNF827Q17R98 1081 aa34.02■■■■□ 3.04
HMGN1-217ENST00000489072 SPON1Q9HCB6 807 aa34.01■■■■□ 3.03
HMGN1-217ENST00000489072 PLEKHG2Q9H7P9 1386 aa34■■■■□ 3.03
HMGN1-217ENST00000489072 NPC1L1Q9UHC9 1359 aa34■■■■□ 3.03
HMGN1-217ENST00000489072 IL13P35225 146 aa33.99■■■■□ 3.03
HMGN1-217ENST00000489072 MTHFSP49914 203 aa33.99■■■■□ 3.03
HMGN1-217ENST00000489072 PHKG2P15735 406 aa33.98■■■■□ 3.03
HMGN1-217ENST00000489072 MPRIPQ6WCQ1 1025 aa33.98■■■■□ 3.03
HMGN1-217ENST00000489072 AEBP1Q8IUX7 1158 aa33.98■■■■□ 3.03
HMGN1-217ENST00000489072 AKT1S1Q96B36 256 aa33.97■■■■□ 3.03
HMGN1-217ENST00000489072 ZBTB7AO95365 584 aa33.96■■■■□ 3.03
HMGN1-217ENST00000489072 IFNL2Q8IZJ0 200 aa33.96■■■■□ 3.03
HMGN1-217ENST00000489072 TUBGCP6Q96RT7 1819 aa33.95■■■■□ 3.03
HMGN1-217ENST00000489072 CNGB1Q14028 1251 aaPredicted RBP33.95■■■■□ 3.03
HMGN1-217ENST00000489072 QSER1Q2KHR3 1735 aa33.94■■■■□ 3.02
HMGN1-217ENST00000489072 CCNL1Q9UK58 526 aaPredicted RBP33.94■■■■□ 3.02
HMGN1-217ENST00000489072 PIGBQ92521 554 aa33.93■■■■□ 3.02
HMGN1-217ENST00000489072 SULT6B1Q6IMI4 303 aa33.92■■■■□ 3.02
HMGN1-217ENST00000489072 KDRP35968 1356 aa33.92■■■■□ 3.02
HMGN1-217ENST00000489072 PALLDQ8WX93 1383 aa33.92■■■■□ 3.02
HMGN1-217ENST00000489072 PLEKHO1Q53GL0 409 aaPredicted RBP33.9■■■■□ 3.02
HMGN1-217ENST00000489072 ATF5Q9Y2D1 282 aaPredicted RBP33.89■■■■□ 3.02
HMGN1-217ENST00000489072 TAF1LQ8IZX4 1826 aa33.88■■■■□ 3.01
HMGN1-217ENST00000489072 C5P01031 1676 aa33.88■■■■□ 3.01
HMGN1-217ENST00000489072 PTGER2P43116 358 aa33.87■■■■□ 3.01
HMGN1-217ENST00000489072 AMOTQ4VCS5 1084 aa33.86■■■■□ 3.01
HMGN1-217ENST00000489072 ZNF530Q6P9A1 599 aaPredicted RBP33.86■■■■□ 3.01
HMGN1-217ENST00000489072 PPP1R1BQ9UD71 204 aaPredicted RBP33.86■■■■□ 3.01
HMGN1-217ENST00000489072 COL3A1P02461 1466 aaPredicted RBP33.85■■■■□ 3.01
HMGN1-217ENST00000489072 MTFR1LQ9H019 292 aa33.85■■■■□ 3.01
HMGN1-217ENST00000489072 TMOD3Q9NYL9 352 aa33.85■■■■□ 3.01
HMGN1-217ENST00000489072 PNPLA7Q6ZV29 1317 aa33.84■■■■□ 3.01
HMGN1-217ENST00000489072 SMARCC1Q92922 1105 aaPredicted RBP33.84■■■■□ 3.01
HMGN1-217ENST00000489072 TFCP2L1Q9NZI6 479 aa33.83■■■■□ 3.01
HMGN1-217ENST00000489072 KDM6AO15550 1401 aaPredicted RBP33.82■■■■□ 3
HMGN1-217ENST00000489072 DIAPH1O60610 1272 aaKnown RBP33.81■■■■□ 3
HMGN1-217ENST00000489072 HSP90AB1P08238 724 aaKnown RBP33.8■■■■□ 3
HMGN1-217ENST00000489072 DCAF5Q96JK2 942 aa33.8■■■■□ 3
HMGN1-217ENST00000489072 SGIP1Q9BQI5 828 aa33.8■■■■□ 3
HMGN1-217ENST00000489072 ASAP1Q9ULH1 1129 aa33.8■■■■□ 3
HMGN1-217ENST00000489072 HMOX1P09601 288 aa33.79■■■■□ 3
HMGN1-217ENST00000489072 ERVV-2B6SEH9 535 aa33.78■■■■□ 3
HMGN1-217ENST00000489072 C4BP0C0L5 1744 aa33.76■■■■□ 3
HMGN1-217ENST00000489072 ATG3Q9NT62 314 aa33.76■■■□□ 2.99
HMGN1-217ENST00000489072 C1orf141Q5JVX7 400 aa33.75■■■□□ 2.99
HMGN1-217ENST00000489072 COL24A1Q17RW2 1714 aa33.75■■■□□ 2.99
HMGN1-217ENST00000489072 LOC102724428A0A0B4J2F2 783 aa33.74■■■□□ 2.99
HMGN1-217ENST00000489072 SIK1P57059 783 aa33.74■■■□□ 2.99
HMGN1-217ENST00000489072 SLC16A10Q8TF71 515 aa33.74■■■□□ 2.99
HMGN1-217ENST00000489072 SCN11AQ9UI33 1791 aa33.73■■■□□ 2.99
HMGN1-217ENST00000489072 COL23A1Q86Y22 540 aaPredicted RBP33.71■■■□□ 2.99
HMGN1-217ENST00000489072 UBR3Q6ZT12 1888 aa33.69■■■□□ 2.98
HMGN1-217ENST00000489072 CABP4P57796 275 aa33.69■■■□□ 2.98
HMGN1-217ENST00000489072 ITPK1Q13572 414 aa33.69■■■□□ 2.98
HMGN1-217ENST00000489072 VIRMAQ69YN4 1812 aaKnown RBP33.69■■■□□ 2.98
HMGN1-217ENST00000489072 HMGB2P26583 209 aaKnown RBP33.68■■■□□ 2.98
HMGN1-217ENST00000489072 PPP2R1AP30153 589 aa33.68■■■□□ 2.98
HMGN1-217ENST00000489072 AKAP4Q5JQC9 854 aa33.68■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms